Spg011036 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011036
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	photosynthetic NDH subunit of lumenal location 2, chloroplastic
Location	scaffold4: 27920688 .. 27921961 (-)
RNA-Seq Expression	Spg011036
Synteny	Spg011036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTAATGAATGGATGAAATGGATACGAAGGTAACCCCACAAAGGAAGTCTGTGTGTTTCCCTTACGGAAATTAAAGGCGAGAAGCCAAAAGTTTATCCAAAGCCATGCCTCCCTTTGCCAACGCCAACGCCAACACTTTCTTCTCCACTCGCATTTCCACTCCACACAAATGCCACCGCCACCCCTTCCCCATCATCACCGCCTCCCTTTCGGTCCACCGCCGCCATATCGCGACGGCACTCGCGGCGGCGGTTGGGCTGCAGGCCGCGGCGCCGCTCGCTCTTGCCCAGAGCTGGGGCACCCACTCGTTCATTAAAGAGCGGTACTTCGAGCCAGGGCTGTCGGCGGAGGATGCGGTGGCGCGGATAAGACAGACGGCGGAGGGACTTCACAGCATCCGGGACATGCTTGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTGAAGTCAGCCTATCTCTCTCAAGACTTGAAAACTGCCATGGCCGTTCTGCCCCAAACTCGCCAAGCTGACTTCGTTAAGATTGCTAATGAGTTGGTCGATAACATGGCCGAGGTATCCACTTTTTCTGCCATTAGATTGAATTTCTGTTTGGATCAATTGGTTATAGGAATTTCTTGAATCCCATCTCAAAGTTTGAATTTTTGGAGAGATTATATGCTTTAAACAAAGGTAATTTAACACAATGACTATGAGTGACATTGAAAACTGCGTACGCTGCCCCTTTCCTAAAACTGAATATGTAAGTAAAGATATGGATTTTAGAAATTGGACTTATATGTAGCTGATGAAATTAGCAAATTAATTAAGATACAATAATCTACTTATCCATTCAAGAATCGTACTAGTCTACACGGTGATAACTTGGTTTGGACCTTTGTACTAATTTGATTTGTGTTTGTTCATTGGACATTGGCTTGGTATTTCTTCAGTTGGATTACTACGTTCGCACACCGAAGGTGTACGAGTCATATTTGTATTACGAAAAGACACTGAAATCCATCGATGATTTGGTGGCTTTATTGGCTTAGCTGCAAATAATAACTCACCAAGCTAAGTATCATCACGGATTGAATGCGTCGAAAGGGAACGCCTCTCACATGCATAGAAAGTTTCTGCACATTTGGATATGTCATGTTTTAAGAATTATTGGCCTTTTATTACAACTCCATATGTAAAAATTGTTTATTCGACAATAGTAATAATGTAGAAATCATTTCTTTCTTTTAAAAAATTTAACATTTTTGAGGTACAATTCCGACTCT

mRNA sequence

ATGCCTCCCTTTGCCAACGCCAACGCCAACACTTTCTTCTCCACTCGCATTTCCACTCCACACAAATGCCACCGCCACCCCTTCCCCATCATCACCGCCTCCCTTTCGGTCCACCGCCGCCATATCGCGACGGCACTCGCGGCGGCGGTTGGGCTGCAGGCCGCGGCGCCGCTCGCTCTTGCCCAGAGCTGGGGCACCCACTCGTTCATTAAAGAGCGGTACTTCGAGCCAGGGCTGTCGGCGGAGGATGCGGTGGCGCGGATAAGACAGACGGCGGAGGGACTTCACAGCATCCGGGACATGCTTGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTGAAGTCAGCCTATCTCTCTCAAGACTTGAAAACTGCCATGGCCGTTCTGCCCCAAACTCGCCAAGCTGACTTCGTTAAGATTGCTAATGAGTTGGTCGATAACATGGCCGAGTTGGATTACTACGTTCGCACACCGAAGGTGTACGAGTCATATTTGTATTACGAAAAGACACTGAAATCCATCGATGATTTGGTGGCTTTATTGGCTTAG

Coding sequence (CDS)

ATGCCTCCCTTTGCCAACGCCAACGCCAACACTTTCTTCTCCACTCGCATTTCCACTCCACACAAATGCCACCGCCACCCCTTCCCCATCATCACCGCCTCCCTTTCGGTCCACCGCCGCCATATCGCGACGGCACTCGCGGCGGCGGTTGGGCTGCAGGCCGCGGCGCCGCTCGCTCTTGCCCAGAGCTGGGGCACCCACTCGTTCATTAAAGAGCGGTACTTCGAGCCAGGGCTGTCGGCGGAGGATGCGGTGGCGCGGATAAGACAGACGGCGGAGGGACTTCACAGCATCCGGGACATGCTTGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTGAAGTCAGCCTATCTCTCTCAAGACTTGAAAACTGCCATGGCCGTTCTGCCCCAAACTCGCCAAGCTGACTTCGTTAAGATTGCTAATGAGTTGGTCGATAACATGGCCGAGTTGGATTACTACGTTCGCACACCGAAGGTGTACGAGTCATATTTGTATTACGAAAAGACACTGAAATCCATCGATGATTTGGTGGCTTTATTGGCTTAG

Protein sequence

MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLALAQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA

Homology

[Close]

BLAST of Spg011036 vs. NCBI nr
Match: XP_022946003.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 6.3e-83
Identity = 161/185 (87.03%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+HRRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ ++VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Spg011036 vs. NCBI nr
Match: XP_038880767.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 316.2 bits (809), Expect = 1.8e-82
Identity = 163/182 (89.56%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 7   ANANTFFSTRISTPHKC---HRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLALAQS 66
           ANANT F +RISTPHKC    RH FPIITASLS+HRRHIATALAA +GLQA APLALAQS
Sbjct: 5   ANANTLFISRISTPHKCSHRRRHHFPIITASLSIHRRHIATALAAVIGLQATAPLALAQS 64

Query: 67  WGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQ 126
           WGTHSFIKERYFEPGLSAE+AVARI+QTAEGLHSIR+MLETMSWRYVIFYIRLKSAYLSQ
Sbjct: 65  WGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQ 124

Query: 127 DLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 186
           DLKTAM+VLPQ RQ DFVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL
Sbjct: 125 DLKTAMSVLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 184

[Close]

BLAST of Spg011036 vs. NCBI nr
Match: XP_022972860.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 5.3e-82
Identity = 159/185 (85.95%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+ RRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYF+PGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ D+VK ANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Spg011036 vs. NCBI nr
Match: KAG6598987.1 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011082.1 Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.3 bits (804), Expect = 7.0e-82
Identity = 160/185 (86.49%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+ RRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSISRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ ++VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Spg011036 vs. NCBI nr
Match: XP_023545788.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.2 bits (801), Expect = 1.6e-81
Identity = 159/185 (85.95%), Postives = 170/185 (91.89%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+ RRHIATALA   GLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ ++VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Spg011036 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-48
Identity = 100/148 (67.57%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 39  RRHIATALAAAVGLQAAAPLALAQ-SWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHS 98
           RR   T+L     +  A   ALAQ  WGT SFIKE+YF PGLS EDA ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 99  IRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYY 158
           +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM +LP++R+ D+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 159 VRTPKVYESYLYYEKTLKSIDDLVALLA 186
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of Spg011036 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 31/115 (26.96%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +KER++   L   +AVAR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           A  P+  +    ++  +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of Spg011036 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +KER++   L   +A AR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           A  P+  +    ++  +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of Spg011036 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08
Identity = 28/115 (24.35%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +K+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           +  P+  +     +  +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Spg011036 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 39/156 (25.00%), Postives = 75/156 (48.08%), Query Frame = 0


Query: 45  ALAAAVGLQAAAPLALA----------------QSWGTHSFIKERYFEPGLSAEDAVARI 104
           ALA A   +AA P+ L                 Q+  T   ++ER++   L   +A AR 
Sbjct: 61  ALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARA 120

Query: 105 RQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELV 164
           +++A+ + +++ ++E   W +V   +RL+++YL  DLKT +   P+  +     +  +L 
Sbjct: 121 KESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLF 180

Query: 165 DNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
             +  LD+  +     E+  YY  T  ++ D++A L
Sbjct: 181 ATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of Spg011036 vs. ExPASy TrEMBL
Match: A0A6J1G2K7 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450221 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.0e-83
Identity = 161/185 (87.03%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+HRRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ ++VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Spg011036 vs. ExPASy TrEMBL
Match: A0A6J1I9U1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471370 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.6e-82
Identity = 159/185 (85.95%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+ RRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYF+PGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ D+VK ANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Spg011036 vs. ExPASy TrEMBL
Match: A0A0A0L3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.0e-79
Identity = 160/187 (85.56%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKC-HRHPFPIITASLSVHRRHIATALAAAVGLQAAAPL- 60
           MP  ANAN NT FS+RISTPHK  HR  FP+ITASL +HRRHIAT LA  VGLQAA PL 
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKS 120
           ALAQSWGTHSFIKERYFEPGLSAE+AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180
           AYLSQDLKTAM  LPQ R+ DFVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVALLA 186
           DLVALLA
Sbjct: 181 DLVALLA 187

[Close]

BLAST of Spg011036 vs. ExPASy TrEMBL
Match: A0A5D3DC39 (Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001130 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.3e-77
Identity = 156/182 (85.71%), Postives = 164/182 (90.11%), Query Frame = 0


Query: 5   ANANANTFFSTRISTPHK-CHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLALAQS 64
           ANAN +T FS+ ISTPHK  HR  FPIITASL +HRRHIAT LA  +GLQAA PLALAQS
Sbjct: 6   ANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQS 65

Query: 65  WGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQ 124
           WGTHSFIKERYFEPGLSA++AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQ
Sbjct: 66  WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQ 125

Query: 125 DLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 184
           DLKTAM  LPQ RQ DFVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL
Sbjct: 126 DLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 185

Query: 185 LA 186
           LA
Sbjct: 186 LA 186

[Close]

BLAST of Spg011036 vs. ExPASy TrEMBL
Match: A0A1S3AVQ2 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483197 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.3e-77
Identity = 156/182 (85.71%), Postives = 164/182 (90.11%), Query Frame = 0


Query: 5   ANANANTFFSTRISTPHK-CHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLALAQS 64
           ANAN +T FS+ ISTPHK  HR  FPIITASL +HRRHIAT LA  +GLQAA PLALAQS
Sbjct: 6   ANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQS 65

Query: 65  WGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQ 124
           WGTHSFIKERYFEPGLSA++AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQ
Sbjct: 66  WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQ 125

Query: 125 DLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 184
           DLKTAM  LPQ RQ DFVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL
Sbjct: 126 DLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 185

Query: 185 LA 186
           LA
Sbjct: 186 LA 186

[Close]

BLAST of Spg011036 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-49
Identity = 100/148 (67.57%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 39  RRHIATALAAAVGLQAAAPLALAQ-SWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHS 98
           RR   T+L     +  A   ALAQ  WGT SFIKE+YF PGLS EDA ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 99  IRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYY 158
           +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM +LP++R+ D+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 159 VRTPKVYESYLYYEKTLKSIDDLVALLA 186
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of Spg011036 vs. TAIR 10
Match: AT1G14150.2 (PsbQ-like 2 )

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-33
Identity = 73/117 (62.39%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 39  RRHIATALAAAVGLQAAAPLALAQ-SWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHS 98
           RR   T+L     +  A   ALAQ  WGT SFIKE+YF PGLS EDA ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 99  IRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAEL 155
           +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM +LP++R+ D+V+ ANELV+NM+E+
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159

[Close]

BLAST of Spg011036 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 28/115 (24.35%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +K+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 108 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 167

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           +  P+  +     +  +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 168 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of Spg011036 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 28/115 (24.35%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +K+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           +  P+  +     +  +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Spg011036 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06
Identity = 29/121 (23.97%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 65  GTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124
           GT +FIK+  +   +  +  + R+++ A  L ++ D++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 125 LKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
               ++      +     +AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 185 A 186
           A
Sbjct: 220 A 220

The following BLAST results are available for this feature:

BLAST of Spg011036 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946003.1	6.3e-83	87.03	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita mosch...	[more]
XP_038880767.1	1.8e-82	89.56	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispi...	[more]
XP_022972860.1	5.3e-82	85.95	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxim...	[more]
KAG6598987.1	7.0e-82	86.49	Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurb...	[more]
XP_023545788.1	1.6e-81	85.95	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo ...	[more]

BLAST of Spg011036 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI73	1.8e-48	67.57	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
Q41806	1.6e-09	26.96	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]
Q41048	4.8e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
Q9XFT3	1.8e-08	24.35	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P83646	1.3e-06	25.00	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]

BLAST of Spg011036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2K7	3.0e-83	87.03	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1I9U1	2.6e-82	85.95	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita max...	[more]
A0A0A0L3W3	2.0e-79	85.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1	[more]
A0A5D3DC39	3.3e-77	85.71	Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3AVQ2	3.3e-77	85.71	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo ...	[more]

BLAST of Spg011036 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14150.1	1.3e-49	67.57	PsbQ-like 2	[more]
AT1G14150.2	1.3e-33	62.39	PsbQ-like 2	[more]
AT4G21280.1	1.3e-09	24.35	photosystem II subunit QA	[more]
AT4G21280.2	1.3e-09	24.35	photosystem II subunit QA	[more]
AT3G01440.1	1.0e-06	23.97	PsbQ-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 60..185 e-value: 2.2E-32 score: 112.4
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 28..185
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 41..184 e-value: 1.4E-38 score: 134.3
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 74..185
None	No IPR available	PANTHER	PTHR33399:SF5	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC	coord: 28..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011036.1	Spg011036.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity