Spg010961 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg010961
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold4: 27570691 .. 27575125 (-)
RNA-Seq ExpressionSpg010961
SyntenySpg010961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAGAGGCCCAAAAGAAATGAAGTTGGCCCAAGAATTGAAGCCCAAAACGCGCTTGAAAGTTCTGGAATTCGCCTAGCATCGAGACGCTGTAGGGACAACGTCCTGTCCTATTTCTTGGCCGGCAAGTCGATGACGTCACAGCGTCGTGACGCTGTGCCCATAGCGTTGCGACGCTGTCTTATTTCCGGGCCTATAAATAGCGCCTCTTGGTGCCCATTTTTACCATCAATCATCATTTCCTTCATTCATTCCCTTCCTTCCTTGGCTCCTTTGGAGCCTCTATCAAGGCTTTTTAGCCTTTTTGAGAGTTCTTTTAGTGGGAAAAATTTTGGGGAGTTTTGGGGAGCACTCTAGGAGGCTCAAGGTCTGCTCGGAGGGACTCCAAACGCCAGCGACGGGGTCTTCGACGGTCAATTCCTTCCCTTTTATTGTGCTCATATTTATGCTTTCCATTGTAAATTTTGTGAAATGTTGTTATAATTGCCTATCTCTTGCCCTGTTTACTATTTATTTGTATGGATGCTCGTAATGTTGTATGCAATCTAGCCAGTTGTGTATTGATTCAAATCTTAGTGGAGACTCGACGGAGAGAAGTTAGGATAGGTCATAATCCATGCAACTAGTTTAATTGCCCGTAGTGACAACGAGATTAGTTGATTAAACTTAGATTCCTAAAATGAATCAGAGCGTAATAATTAACGAATTTTAATGGCGCTAAGGACACTTAGGTTGTTAAAATGGATTAATTGCAATTAGGGGAGACCGACAGGAGAACTTATGTGATTAACGGAGATTCTAGGAGTATAATTAGTTGGGCAACGAGATAGGATAATTGTAATAATTATTTAGCTATTAATTGAGTTTCAAGACTCCACTTCCCATTTAAAAAACTCTTTCTCCATATTTTATTTTTCTTGATTGATCACTTTACTTTCCTTAATCGTTTTAATTTTAAATTCATTTTTTTTATTGCATGCTTTGGTCCCTAAATATTATTCTCCCAAGTACCTTTAGTGTTCGAGAATCTGTCGCTTTGCTTAATTTTCGCTTTGGCTCCCTGTGGATTCGATACTCGGAATATTTCCGTTTTATATTACTTGCGGCCCGTGCACTTGCGGTATTTGCACTCGCCCAACAGGATGTATTAAGAACATTTTAGTGGAAGAATTTAAACCGTTATAAAACAATTGTACTTTGAGCGTTTCCAGGTAGCCATGCTGTGGGCATCTCTTTAGCATCTCTTTGTAACGTTCCCACACCTCGTATAATTGCTCGTTGTCGATTTGTCTGAATGTTCCAATCTCCGTACGAAGTTTGGTTGTCTTGGCGGGTGGGAAAAACTTCGTGAGAAATGCCTGAGCCAGCTCGTCCCAGGTGTTGATATTTCCAAGTTCTAACAATTCTAACCAATCCTTAGCTTTATCTTGGAGGGATAATGGAAATAACCTCAATCTTATAACATCCATCAAAACTCCGTTCATCTTGACCGACCCACAAATCTCTAAGAAGGATCAAAGGTGGGAGTGAGGATCTTCTGAACGGTGTCCTTTAAAAGAACAGTCCCCTCGCCATTTGGATCAAACCCGTCTTCAGTTCAAAATTGTTCGCCTGTACGGGAGCGTAGACGATGCTAGAATTTTCGGTTGGGAGAATCGGCTGTAGAAAATCTCTGATGGCTTTGGGTGCATTATCTTTCTGGGCCATCTTTTTTGTCAATCTTTTATCTCTATTAATAACTCTAATCGTTCTATCGATTTCAAGATCTAAAGGAAATAGATCAGCCTCCTTATATCTTCGCATACACAGTCCCCAAGCTAATCAAACTAAAAAAATAAACTAATCACAAAATTCAAAAAATTCAAATATTAACACCCTAAATTAATATTCAATCCTTTCTTTTTAATGTCAGAAAATTATGTTGCCGAAAAAACACACCTCCAAAGCAACGACGCCAAAAACTTGTTGTGATACCCGCAAGCGTACGGTTGCCATAAGTAATATAAAACGGTAGAGTACCGAGTTTCGATTTCCACAGGGAGGATTGTATTTAGACAAGATAATAAACCAATAACTAAAAATACTAAGATGGATTAATATTTAGGGACCTAGACATAATGAAGGATGCAGTCAGAATTAAAACAAACAATGAATTAAATTGATCAAGCAAGGTGGTAAAGAGGATGGCAGAGTCAATTGACAGGCAGGGTCTTGAAATCCGGAATATACCTTATTAATTATTCTAATTATCCTATCTTGTATCCAACTAGTTATAAACCTAGAATCTCCGTTAATACATAGGTTCTCCTGTCGGTTTCCCGTAATTATAACTAACTCAAGTTAATAACCTAAGTGTCCTTGGCGCTACTAAACGGGTTAATTAATGATCTTTGATTCATTTTCGGTCTTTAAGCCTAACCAACTACTCTCGTAGCAGTTAAGCCTTGTAAACCCGAGACTTTCCTTGGATTATTTTCTCTTGTCATCTTTTGTGGAAGTTGAATTTATGTTGTTGGGATTTACTAATTTAAAAGAAGAAAGACAAGAAAGGAAATAAAGAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGTTAAAAAAAAAGAAAAAGAGAAAATGGGAAAATTTCTGGCGGTGCTTTAAAACCCACCACCGACAATCATCTATATCAGCTCATTTTAGCCCATTTCTCCATCTTTTCCCCAACCAAACTTCAGAGCATTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAATATTTTCGGGGTTTTGAGGTTGAAGAAGATAGGAAACAGCTCAAGCAAGGGCAACCATGGCAGAGTCTGGATTCAACCTGCCTATCTCTAGTTTTTGATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATTGTCTTGAAATTTAATCAATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATAGGGTGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCAGAGAATTTTCGTGCAAACTAGAAGGATCTCTGGTTTTCTCTGGTTTTTTGAGCTTTCTGGGGTGTACAAGTTGAATCTGAAGCTCTATTTGGTATGGTTGAAAAGCTGATTAAATTTCCTATAACTTTCATGAAGAATTCGTGAGCCCAAAATGACTTGAAGTAGGTGTAATTTCAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATATGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATAGGTTGGGAATCTCGTTTTGATTTCTTCAGGTAAGTTTTAGAGTGTTCCAAAATGAAGAGTTTGATATATATTACATTAATTTTAGTCAAGTTTTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTTATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAGACTACTTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCAAAGACAGTGAGTGACAAAAAAAATTTCGAAAATTACTTTTAAACGGTTGTTCATGATTAGATGTTTTATATATTTTTCTATGAATGGTACATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGATTATTGACTTTATGAAAGGTAGTTGAAACGATATCATTTAAAGTAAAGCATGTATTAGCAAGTACTCTTACAAGATTTTCGGTTTTTCATGAGCAAGCTGGGTAAGCTTGAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTATGAGATTTCTATTGACTACATGACTGAGATATTGATCCCGAGGCTAGATGATACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAGCGGTGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCATAGAGCTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTTGATTTGTCATGTTAGTTAAGATGTTTTATATAATTGATATGCCTTGCTAGATTTTAATGACGTACTTGCGGGATATTTGAGAAAGCTTTTATTATTTCACGTTTATGTTTAATGCTTTGATTGAGCAGCCTTATACGTTTAAAGGTTTATCACGTGTTCTGATTTGCAAATCTATAGTTTTTAAACTTAGTTCACTCACTGGGCTTCGTAGCTAACTCTTTCAAAATGTTTTCCCATTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTATCTGTATTGTAAATGTTTTTGAAAGGATTGGATAA

mRNA sequence

ATGAGAAAGAGGCCCAAAAGAAATGAAGTTGGCCCAAGAATTGAAGCCCAAAACGCGCTTGAAAGTTCTGGAATTCGCCTAGCATCGAGACGCTGTAGGGACAACGTCCTGTCCTATTTCTTGGCCGGCAAGTCGATGACGTCACAGCGTCGTGACGCTGTGCCCATAGCGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATATGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATAGGTTGGGAATCTCGTTTTGATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCAAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTATCTGTATTGTAAATGTTTTTGAAAGGATTGGATAA

Coding sequence (CDS)

ATGAGAAAGAGGCCCAAAAGAAATGAAGTTGGCCCAAGAATTGAAGCCCAAAACGCGCTTGAAAGTTCTGGAATTCGCCTAGCATCGAGACGCTGTAGGGACAACGTCCTGTCCTATTTCTTGGCCGGCAAGTCGATGACGTCACAGCGTCGTGACGCTGTGCCCATAGCGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATATGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATAGGTTGGGAATCTCGTTTTGATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCAAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTATCTGTATTGTAAATGTTTTTGAAAGGATTGGATAA

Protein sequence

MRKRPKRNEVGPRIEAQNALESSGIRLASRRCRDNVLSYFLAGKSMTSQRRDAVPIARKIEGSREARICVFCVRGISGQIGWESRFDFFRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESICIVNVFERIG
Homology
[Close]
BLAST of Spg010961 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 91  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI 140
           PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ES+
Sbjct: 137 PRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFESV 185

[Close]
BLAST of Spg010961 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 91  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESICIVNVF 146
           PRGNR +L T KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ES+ +  +F
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLF 133

[Close]
BLAST of Spg010961 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 90  RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI 140
           RPRGNR SLQT KL KTVEIELP+PDTLPT AES  S+SSTW+ELY ES+
Sbjct: 30  RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESV 79

[Close]
BLAST of Spg010961 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-11
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 91  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI 140
           PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS S+SSTW+ELY ES+
Sbjct: 91  PRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESV 139

[Close]
BLAST of Spg010961 vs. NCBI nr
Match: KAA0066795.1 (uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK27942.1 uncharacterized protein E5676_scaffold384G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-10
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 91  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI 140
           PRGNR SLQTR+L KT  IELPVPDTLPTSAESS S+SSTW+ELY ES+
Sbjct: 64  PRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFESV 110

[Close]
BLAST of Spg010961 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-12
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 91  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESICIVNVF 146
           PRGNR +L T KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ES+ +  +F
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLF 133

[Close]
BLAST of Spg010961 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-12
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 91  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI 140
           PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ES+
Sbjct: 137 PRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFESV 185

[Close]
BLAST of Spg010961 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 90  RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI 140
           RPRGNR SLQT KL KTVEIELP+PDTLPT AES  S+SSTW+ELY ES+
Sbjct: 30  RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESV 79

[Close]
BLAST of Spg010961 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 91  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI 140
           PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS S+SSTW+ELY ES+
Sbjct: 91  PRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESV 139

[Close]
BLAST of Spg010961 vs. ExPASy TrEMBL
Match: A0A5D3DWP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001370 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 91  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI 140
           PRGNR SLQTR+L KT  IELPVPDTLPTSAESS S+SSTW+ELY ES+
Sbjct: 64  PRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFESV 110

The following BLAST results are available for this feature:
BLAST of Spg010961 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ96965.11.4e-1181.63uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa][more]
KAA0052218.11.4e-1172.73uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0040420.14.0e-1178.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0062263.15.2e-1177.55hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa][more]
KAA0066795.14.4e-1079.59uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of Spg010961 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg010961 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH66.6e-1272.73CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BET36.6e-1281.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TAS61.9e-1178.00NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7V2F22.5e-1177.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DWP32.1e-1079.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg010961 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg010961.1Spg010961.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding