Spg010920 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010920
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 7216467 .. 7220730 (+)
RNA-Seq Expression	Spg010920
Synteny	Spg010920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCTACCATTTCAGGGGCAAGACCGAATGGGGGTTGGGAACATAACAGTACAAGATGGAATTCACTTCTTCCCCTATTGGGGTAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCCGGGCCTTGAACAAAGGCGCGCCGTCCTCTCCTGGCCTGAAAGGAACTCCTGTTTAGTGGTTGGACCCTAAACAACTTGTTCATTAGAGGAATCAGTGGTACTTAAGGAACCAGAGGTAACCCAGAGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGAACACACGTGAAGGATTGACTTACTGCATTGGTCGATATCCGTGGACACAGAAATATTCTACAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGACTAACTTGGTTAATGAGTTTGGCCAATTAGTCTTGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAGATGCTTGAGGCAATTAAGTATAAATTATAAATTGAAATTGTTCAATTTATTTGGAGAATCGTATAATGTATATTGATGCATTATAATATAAAGTTTATGAAACTTTATAATATAATTTTTGAATTAATTTCAAAAATTAATTCTTCAGAGAAAATATTTGAAAGAGTTGAAATAAGTTTAATATGAATTGGATTCATATTGATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGTAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGACCTTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAAATTAAATATATGATATTTAATTGGGAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGACTTTTTCCTAATAGGAAAAGGTCTTGGCCTTTACTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAGAGAATTCCCCTCAAGGCTTCCTCTGGACTCCCACCAGTCTCCTACCTCTAGAAGTCTCAGAGTCATACTGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCGTGATTATTTCACAAGCAGTTGGTGATTTAATCTGAGTCGTCAACGAGAGTAAGTAATTTGTTACTATATAAATTAGATTTAGATCTAATTTTTGTATGCTTAGCCTTAATATAAATTTAGAATAGTTCTAAAATTATTGCCAATGTATTGATATTTTAGATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTCCGCTTTACGGAATTACGGAATTCCAATCCTTCATTATTGCAGAATCAAGTAACAGATCAAATAAGCTTGAGGAGGCCGTGATTGCCATAAACACCACTGTCAATGGTCATTCTACAACCATCAAGAACATCGAGACTCAGCTGGGACAGCTAGTAAGTGTTGTCAACACAATGAATAAAGGTAAAGCCCTAGCTGAACAGGAGAAATCTCCATTGGAGTACTGCAAGCCCGTCACTGTGCATCACGAGGAGGAGACTCAAGTAGCTGAGGAGGACACTACTGAACCAAAGGAACTCATTGGAGAAGCTGAGCAGGGCACCACCTCAAACGAAGCTGAAAAGCTTAATCCTGAGCCTTCTAGCCCTTCTTCTACTGTTTTAGTTCCTAAATCAAAGAAAAAGAAAAATTCTAAGGCTAAGTTTGACAAGTTTCTAGATGCTTTTATGGGATTGCATGTTAATATTCCTTTTTCAGATGCCCTGGAGCATATGCCTCATTACAAGAAGTTCATGAAGGAATGGCTCAACAAGAAGAAAAAGGAGAGGCAGATGGAGACTGTGTACTTAGCATCGACATGCAGTGCTCGTGTTCAACAGACAGTGCCAGAGAAATTGACTGATCCAGGGAGTTTTACTATTCCTTGTAATTTTGGTACTTATTCTTGTAGAGCACTATGTGATCTAGGGGCTAGCATAAACATAATTTCTCTGTCATTGTGCAAAAATCTAAATATAGGAGAGATAAAATCTACTACTGTTAGGCTCCAGTTGGCTGACCAGTCTGTGGTTAGTCCATATGGGATGGTTGAGAATGTACTGATCAAAGTAGGTAGATTTTTCCTTCCTGTTGACTTCTTTGTTTTGGATATTAAAGAGAATCTTGCTATGCCTATTATATTAGGGAGACCATTCCTTGCTACAGGGAGAGTTATAATTGATATTGAGTGCAGGGAGCTGATCATTAGAGTGCAACATGAAAATGAGATCCTAAAAGCTTTTGAGGACCCTAAGAACACATCAGAGACCATGTTGGTGGGGTACAGGAAAGGTGCTAGGAAGAGCACTGTTGATGGAACACCTGACATTAGACCACCTTGATGCTTATTCGGTCAACACGTCGAGCTAATGACGTTAAACAAGCGTTTATGGGAGGCAACCCAAGTAAGTCCAGTTGTGTTTTTCTTTTTGCTTTCGATTTATTGTTTGTTTTTGTTTTTTAGGTCTTGGTTCCAATTTTTCCTTTGTTTGCAAGCTTCCATAAAAGAAGTCATCGTCCTTCTAGGGCAGTATTGTTCACTCCTTCCATTCTTTATTTGTTCTCATGCTTGTTTATGCCTTATTTTCTTTATACATTGAGGACAATGCATGTTTTAAGTTTGGGGGTGGAATATCATGTTTGTGGAGCTCTTGAGCATCTGAGTTCGGGCTATAGTTTTGAGCTTTCTGTGAATTGAGCATATGGTTGTTTTCTGGATGCTATTTTTGCATGACTATGATTTCCTAGGATAGGCTTTCTTGTCAATTTTCAAGCTTTCGATGAGTTGTAAGCATGAGTGCCCAAAAAGGGAGACTTTTTAAACTTTTTCTAGGAGATGTCTTGCATGAGTAGAGTATTTGTCTTGGCTAGATTTGGATTCGAATGCTTAGGAGCGAATTATTAGGTTCATATGCTTGTTGTCACCTCGATAGGTGTTGGGAAGAGCTAAAGAGTTAATTTTTTGCAAATTAGCATGTCTAATCTTGCTTAGGAGGAAAGAAAAGAATATATTCTTATCATGCTCATAAAGAAAAATCATTCTTGTTGTTACAATTTGAAAGAGAAAAAAAAAAGAGAAAGTCATGACTTATGCGCGCAATGCAATGTTTAATAAAGATTTAGGCAAAAAGAGCTACCCCTGTTGTGATCAGTTAGGCCAACCAAAGGGTAAAACTCGGGTTATGGGTCCCTGCAATAGGTGTGTGAAAGCTAGTGCCACATAAAAATGCATGTTGTAATTGTCAATTATAAGCACCTAAGTATGGAGGAAAACAAACTAATTTGTTGCATTGACTCGTTAGTGAATCCTTAGTGCCAGTGTAGAGGGAAGATGAGTTGAGAGTTTAATAATCCAATCCCGGGCTAGTAGAGTCTGATCTTGTTAAGATAGATCTCACTTGTGCAAGTTAATTTTGGAAAACTTTTGATTTGTCTCCCTCATTGGTCCTTATGTGCATGTCTCTTGATTGCTTGATTATTGACTTTTGAGCCTTGAGGATTGAGTCATGTTTGTTGCATCCATTCTTCCATTGTATGCTTGATTTTAGTTTGCTCGAGGACTAGCAAAAGCTTAAGTTTAGGGGTGTTTGATAGCGAGCATAGCTAGCAAGTTTTCCCTAATTATTTTAGCTAGTCTTTTATAATTAAATGGCAAAAATTATGTGTTTTCATGTCTTATTTGTAGGAAATAAATATTGGAGCTAATCGTGTGTTCGGGACATGAAAAGGGGCTAAAGAACGAAAAAGATTCAAGTTGGAAGAAGTCAAAGTCAGCCCAGCCGAGAGCTAGCGTCGGGACGCTGCTCTCTGGGCATCTCGACGCTGACATTCTATATTTGGAGTTCGCGCGAAAAGGTCACAGCGTCACGACGCTCTCAATTAAAATTTCCAGATTCGTGATATCGTGGTAGCGTCGCGACACGACCCCTATAGCGTCGCGACGCTACGACCAAAATTTTCCGTATTTATTCTTTGCGGTTAGGGCTTTTTGGGGGGACTTCTTTTGGACGATTTGGAGGCCAAAAACTCGATAGAAAGGCTGCTGTGAAGGTTGAAGCAAGGGGAGAAAAGGGGATTTCAAGGCTTTGTTCGTGGGATCGTGACGGGGACGTGCGGTCTCGGCCTACTTAG

mRNA sequence

ATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCTACCATTTCAGGGGCAAGACCGAATGGGGGTTGGGAACATAACAGTACAAGATGGAATTCACTTCTTCCCCTATTGGGAAATATTCTACAGTGAGAAGAGTGCAGCTGACCCCTGGGGTGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAGAGAATTCCCCTCAAGGCTTCCTCTGGACTCCCACCAGTCTCCTACCTCTAGAAGTCTCAGAGTCATACTGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTCCGCTTTACGGAATTACGGAATTCCAATCCTTCATTATTGCAGAATCAAGTAACAGATCAAATAAGCTTGAGGAGGCCGTGATTGCCATAAACACCACTGTCAATGGTCATTCTACAACCATCAAGAACATCGAGACTCAGCTGGGACAGCTAGTAAGTGTTGTCAACACAATGAATAAAGGTAAAGCCCTAGCTGAACAGGAGAAATCTCCATTGGAGTACTGCAAGCCCGTCACTGTGCATCACGAGGAGGAGACTCAAGTAGCTGAGGAGGACACTACTGAACCAAAGGAACTCATTGGAGAAGCTGAGCAGGGCACCACCTCAAACGAAGCTGAAAAGCTTAATCCTGAGCCTTCTAGCCCTTCTTCTACTGTTTTAGGGCTAAAGAACGAAAAAGATTCAAGTTGGAAGAAGTCAAAGTCAGCCCAGCCGAGAGCTAGCGTCGGGACGCTGCTCTCTGGGCATCTCGACGCTGACATTCTATATTTGGAGTTCGCGCGAAAAGGGCTTTTTGGGGGGACTTCTTTTGGACGATTTGGAGGCCAAAAACTCGATAGAAAGGCTGCTGTGAAGGTTGAAGCAAGGGGAGAAAAGGGGATTTCAAGGCTTTGTTCGTGGGATCGTGACGGGGACGTGCGGTCTCGGCCTACTTAG

Coding sequence (CDS)

ATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCTACCATTTCAGGGGCAAGACCGAATGGGGGTTGGGAACATAACAGTACAAGATGGAATTCACTTCTTCCCCTATTGGGAAATATTCTACAGTGAGAAGAGTGCAGCTGACCCCTGGGGTGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAGAGAATTCCCCTCAAGGCTTCCTCTGGACTCCCACCAGTCTCCTACCTCTAGAAGTCTCAGAGTCATACTGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTCCGCTTTACGGAATTACGGAATTCCAATCCTTCATTATTGCAGAATCAAGTAACAGATCAAATAAGCTTGAGGAGGCCGTGATTGCCATAAACACCACTGTCAATGGTCATTCTACAACCATCAAGAACATCGAGACTCAGCTGGGACAGCTAGTAAGTGTTGTCAACACAATGAATAAAGGTAAAGCCCTAGCTGAACAGGAGAAATCTCCATTGGAGTACTGCAAGCCCGTCACTGTGCATCACGAGGAGGAGACTCAAGTAGCTGAGGAGGACACTACTGAACCAAAGGAACTCATTGGAGAAGCTGAGCAGGGCACCACCTCAAACGAAGCTGAAAAGCTTAATCCTGAGCCTTCTAGCCCTTCTTCTACTGTTTTAGGGCTAAAGAACGAAAAAGATTCAAGTTGGAAGAAGTCAAAGTCAGCCCAGCCGAGAGCTAGCGTCGGGACGCTGCTCTCTGGGCATCTCGACGCTGACATTCTATATTTGGAGTTCGCGCGAAAAGGGCTTTTTGGGGGGACTTCTTTTGGACGATTTGGAGGCCAAAAACTCGATAGAAAGGCTGCTGTGAAGGTTGAAGCAAGGGGAGAAAAGGGGATTTCAAGGCTTTGTTCGTGGGATCGTGACGGGGACGTGCGGTCTCGGCCTACTTAG

Protein sequence

MGESGQFADSIILPFQGQDRMGVGNITVQDGIHFFPYWEIFYSEKSAADPWGGVKGIPFILLLSENSPQGFLWTPTSLLPLEVSESYWCSHSGGVRTSSLNKINYESVPITLPLYGITEFQSFIIAESSNRSNKLEEAVIAINTTVNGHSTTIKNIETQLGQLVSVVNTMNKGKALAEQEKSPLEYCKPVTVHHEEETQVAEEDTTEPKELIGEAEQGTTSNEAEKLNPEPSSPSSTVLGLKNEKDSSWKKSKSAQPRASVGTLLSGHLDADILYLEFARKGLFGGTSFGRFGGQKLDRKAAVKVEARGEKGISRLCSWDRDGDVRSRPT

Homology

[Close]

BLAST of Spg010920 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-04
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 125 IAESSNRSNKLEEAVIAINTTVNGHSTTIKNIETQLGQLVSVVNTMNKGKALAEQEKSPL 184
           I E  +R++++E  V  +   + G++T+IKN+E Q+GQ+   +NTM KGK  ++ E  P 
Sbjct: 299 INECRSRASRIENQVEGMEVKLEGNTTSIKNMEVQIGQIAPTLNTMQKGKFPSDIEVKPR 358

Query: 185 EYCKPVTVHHEEETQVAEED-------TTEPKELIGE-AEQGTTSNEAEK 227
           E+CK VT+   +E Q  E+        TTE +E   E  ++ T + +A+K
Sbjct: 359 EHCKAVTLRSGKELQEPEKKKMEEPVITTEERENKEEVVKEATPALQADK 408

[Close]

BLAST of Spg010920 vs. ExPASy TrEMBL
Match: A0A6J1DU19 (uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024361 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-04
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 125 IAESSNRSNKLEEAVIAINTTVNGHSTTIKNIETQLGQLVSVVNTMNKGKALAEQEKSPL 184
           I E  +R++++E  V  +   + G++T+IKN+E Q+GQ+   +NTM KGK  ++ E  P 
Sbjct: 299 INECRSRASRIENQVEGMEVKLEGNTTSIKNMEVQIGQIAPTLNTMQKGKFPSDIEVKPR 358

Query: 185 EYCKPVTVHHEEETQVAEED-------TTEPKELIGE-AEQGTTSNEAEK 227
           E+CK VT+   +E Q  E+        TTE +E   E  ++ T + +A+K
Sbjct: 359 EHCKAVTLRSGKELQEPEKKKMEEPVITTEERENKEEVVKEATPALQADK 408

The following BLAST results are available for this feature:

BLAST of Spg010920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157708.1	8.0e-04	34.55	uncharacterized protein LOC111024361 [Momordica charantia]	[more]

BLAST of Spg010920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU19	3.9e-04	34.55	uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Spg010920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010920.1	Spg010920.1	mRNA