Spg010907 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010907
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	FACT complex subunit SSRP1
Location	scaffold10: 7749408 .. 7756424 (+)
RNA-Seq Expression	Spg010907
Synteny	Spg010907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAGGAGGCTTTCGCCGAAATTTCGGTGCCGGAGACTTTCAAGAAGCGCGATTGCAAGTACCGAAGCATGGGGGTTTTGAATGGATCCATTTTTCTGTTTCATTATCCATACCATGGGGATGAAAGGAGCTTTGACGTTTGGCGGATGGACAGGGATAATGAATTGGTTTTATGGTCAACGCTTTTCACAATTGGCCCTGTTTCTGGTATTCAGACACCTTTGGCGTTCATGAGCTCGGATCAACTTTTAATGGAGACCAATGAGGGACAGCTGATTTTGTACAACATTAACACCCAACACTTCAAACACCTTCCACTTGAAGGCTGCCCGCGGGGGTCCCAAGCTACAGCTTTCATTAAGACTCTGTTGTCTGTCAATGTCAATGGAGGCCATAACTAACTTCTTTTTTCAATTTTAAGTCTTTTGATTTGTCCTCCTTGAAGTTCTTAGATGCCTTTTTAGCTTATCTTGTTCTTCCTTCTTCCCCCACCTCCCTCCAGTTATGATGATTGGTTGGTTTGTATGTAAATCTGATAACACCATTAGCTATACCTGTTTGTTTTCCCTTTTCCGAGCTCTTCTTTTGGTCTTACTTTTTGCTGAAATTGTTAGATTCAGGTAAATCAGTTGCTTCCCATCCTAAATCTAGCTCAAAGGCATATGTATCTCTAAGGATTAAGATTTAAATCCTCACTTATCCACTCGTGATGAAATATTAAAAATGTTTATTTATTAATTCAGATAGTTTTTATAAAAAAATTTTGAGGCCTCAACATTTTCAAGTTTAATATTTCTCTCCCTGGAGCATCGACTTTAGTTAAATAGAATTCAAATCCATGTGGGCTACTTGAAAGAAAAATCCTCCTTAATATGTTCATACAACCACATGAGGAAACACCCTCATTACCTCTGGAGCCAGCATGTGTATAGTTTGATGGGTAAAGGCATTTCAACCTTATCCTTTGAGAGATCTTAGATTCAAATTCCCAACCTGTATTGGTGATGTGATATTCTAAGACAATGTGCTCTGAACATATGGCAAAGGTAGCAAGTGCACGTGCCACTTTGTTTTCAAGTGTCTGATCCTGTTCTCATCAAACTTAGGCATCCTTTTTATTTTGTTAATCCACACACACCAATGTTCACAAGAATTACACCTCTAGTTCTCTATGGCTAACTGGATAACAAATCCTAGTCCCCTCTCCTTGATAGAAAAATGTCTTTTACATCCACTTGTCCAGAAAGGTTTCTGATCAGAAGAAAATCAAGGAGGATTTTAAGTTGGAGATTGACTTAGTACGAGCTACAATATAATTTTCCACATACGCATTTTGATTTTTTAGGAATATTGAGTCTTCAAATTTGATCCACTAGGTATGGTTTCTTTCAGGTGCTATCTTGAACTTTAGATACATGAGAATTTGTAGTCACTCTTACCACTACAATTTCCATTATGTATGAGTTGTCAGCCATTTGTTTGGACCTCTAATGGTGCTCAAAACAATCTTTGGAAGAGCCTTTATATTTTCTCCTATTATTATTATCTCTCTTTTTTTTTTGGAGAGTTCAAAACAGCCTATCACTTATATATGTTTTCATGTAGAACCCTGGTCAGGTTAAAACAGATCAAAGAGGTATTTAGTGGAGGAAGCAAGAAGGAGGCAAGGCAATTGAGGTGGATAAAGCAGACATTGTTGGTGTAACATGGATGAATGGCCCAAGGACAAACCAGTTAGGAATTTGGGTCAAAGATTGATTGTATTACAAGTTCAATGGATTTTGTGACCAGGTTTTCTTAGTTTTTATAGAATGATGTAGCTTTTATATTTGTGGACTTTGGAATCCGACTAGAGATGTTAATATTTCATTTACTGCGTGGAGTTATAATTCATTAAAGCATTGCCTTAGTTTGTGGATACCTTTCTGATTGGTCCATGTCATCTGATCAACAGTAGTAGCACGAGTTGAGATGATTACAAATTAACGTTTCAAGAACGTTCGTATTTTTTATGATGCAGTTGAAATGTTCTGATTGTATGACATTTTTTTCTTAATGTAGGACATCACTAGTTTAACCAACATTTTCCAGAGTAATTATGGAATAGCACCAGAGGAAAAGCAGCTTTCTGTCAGTGGCTGTAATTGGGGTGAAGTTGATTTGAATGGTATCCTATTCTGATGCATTCAGTCACCATATTGGTATCCTATTCTAGCCGGAGCTGTTATGCAAATAAAATATGGCAGCCATCTCTCCGCGAAATAGTTTTTTGAGGTTAAGTCTATCTGCTTTTAATTAATTACCTTCAAAACTTATGGTGTAGGGAATATGCGTACTTTCTTGGTTGGTTCAAAGCAAGCATTTGAAGTGTCTTTAGCTGATGTTGCTCTAACAATACTTCAAGGGAAGAATGATGTTATGTTAGAGTTCCATGTGGACGATACTACAGGAGCTAATGAGGTCAATGATTATGTTGTCCCTTTCTGTTAAATAGTTTTTGTGTTTGTTCCTTACCAATTGATGAGCAATATAATATCTAATATCTCTAACTGCAAAGCTTTTGTTTTAGATTGCTTCATTGTAATCTAAGATTTTTAACATAATGAATTTTATGATTACAGAAAGATTCTCTAATGGAGATAAGTTTTCACATACCAAATACAAATACTCAATTTGTTGGTGATGAAAATCGTCCTCTTGTTTAGGTACGATCATTGTCTGTTTCAGACTACAATGCATATTTTTTGTGACTGTTTATGAAGTATTGTTTGGCTTAGGTCTTTCGTGATAAAATCATGTCTATGGCAGATGTTATTGCGGGCATTGAGGAAGCTGTGGTCACATTTGATGGTATTGGCATCCTCACTCCAAGGTAGATATTTATCAAGTGGAAATGTAGTCTGCATGCTGCTTGTTATGTGCCGCACATGCATAGAAGTATCATAGCATGCATATGGTGTAGCCTAAGGGATAAAACGAGAGAATTCTCTAAGAATCTAACTCTAAATCTTTATTAGAAATGAAAGTGTGAAGAATACATGAGAAGCCCTCTATTTATAGGGAATTAGAGAGCAAACTAAATTCCAAAAATATGAAAGAGGATAGTTAAAAGAGGATTAATCAAGGAATTACCCTAATTATCCCAGATGAACCTAGTCCTACTACATTAGCACATGTATCTATTTGATTAGCTTGCATCGTTCCCTCTGACTTTTTTAATGCTGGCTTTTCAGTTTTTCTATTGTCTTAAGGTATTCTAAAGAGCTTATTTTTGTTGTATAGGGGTCGATACAGTGTCGAACTCCACCTTTCTTTCTTGCGGCTCCAAGGACTAGCCAATGACTTCAAAATTCAATACATCAGTGTTGTTTGCCTTTTTCTTACTTCCAAAAGTTTTTCTTCTTCAGTTCTATTGACCATAGATGTTACACTCTCTAGACCAGTCAATAAGATTTGGAGTCTTACGTGCTTGTAATGTTTTGTGCAGTCCAATTAGCAACATACTTTTGTTGGTGTGACTCATCCACCAATCCCTAAAGGCCAAACTTTATACGCTCATATTGTTCTGCAGGTATTTGTCACTTTATTTGTTTAGATTAGATTTCTCTTCATGTACAGAAGGATAACGTTTTTTCCTTATTCATCTTTGCAGTTTGGGACTGACTATGTGGTTCAAAGCGCCTTGCAAATAGGCGATGAACTTCTCCACACAAAGTACAAGGACAAGTTAGAACCTTCCTAGAAGGACAAGTTAGAACCTTCTTAGAAGGTAGAAAATTGCTTCTCCCTCCAAACAGTAAACATCTTCTGTACTATAGATCGAAGGAACACAAATACGGACACAACATGAACACAGTGGCACATTATTTTCTAAGAACTTAGGACATGGGCACAACAAAGCCAATTACTAGATATATTTTTTAAACATAAATTATTTTTATACAATACCAAAGGGAAATTTAAAGTCAATAAGGCATTTTTATTTATTAAATAAACAAGTTTGATGTTACACTAAAAAATTTATTATTTTTGTCCTATATTACTATTTGTCTATTTGTAGAAATTAAATAAACTAATACATGTTCTTGGGATTTGAAGTGTTCAAATATCAAGCTCTCTTACCTCAAATCTGTATTGTTTATATGAAAGTTGGAATTTAACCTTCTGTCTGAGAAAATTGAATAAGGACTTGAATGGTGAAACTAAGTTTCATGCAAACTATTGTATATTTCAGGACTTGGGAACGGGGAAGATAATTGGCAATACTGAATCGAGATTGTATCATCTCAAAGTTAATTGTTCTCCAACAACAAAGGTATGCACTAAACTTGTAGTTCAGTCCAATTCTCTATCAGCTTGTGTCTCTGAGTCCTTAGATCCTTCAAAACAGGACAATCATGTTATATGTGGCATTATCGTCTTGGACATCCTAATTTTACTTTGAGTGATTGTTTCCTTCTCTGTTCATCAATAAAGAGAGCAAATCCTTTCAATGTGAAGTGTGCCAACTTTCAAACCACACACTCTCATTTTTCTCCTCATTCCTATACACCCTTCACACCTTTCTCCCTTATTCATGGCGACATTTGGAGGCCTTCAAGGATAAAGAATGTCATTGGTGCATGATGGTTATTCCAAGTCTTTCATAAAATGATCCTAAATCAGTTTAGAGTCAACATCAGAGTATTTTAAACTGATAATGTTCGTGATTTCTTCAACTCTACACTTGGACCCTATCTTCAATCTCATGGTATTGTCCATCAAAGCTATTGTGTTGACACACCCCAGCAAAATAATGTAGTTGAACGCAAAAATCGTCATCTTCTTGATGTAGCCCGTTCATTAATGTTTACTTCACATGTTCCAAAATATTTTTTTGGGGGAAGCCATTCTAACTGCCACATACCTCATATACTGCATGCCCTCTTGCATTCTTGATTTCAACACACTCCTGCAAAAGTTGCATACCCTATATCCTACATCTCATCTTGTGTCTCAACTACCACTAAAGTTATTTGAGTGTATGACTTTTATTCATATCTATCCTAAAAACCGTGGCAAACTTGATGCTCGATCCATGAAATGTATCTTTCTAGGGTACTCACCAAATAAGAAAGGATCAAATACTATTATCCTTCAACTCGCTAATTTTTGGGACTGCATTCCTCAATTTCCTTCAAGCACACCTGAATACCCTCCTCAATTTCCTTCGTACACACCGAATAACCTTCTTCTAATCAAGTCGTCGATTTATTGAAACCAGCTCTACAACGACCCGTGTTTTGAATCGAATCATTTTGGGATTAATTGAGTGTTCTTGTTCTAATTTGGAAAATTAGAATTTAAGCTTAGCTTTGGGTCGATAAATTAAATTTCTAAAATTTAGGAAAAATAAATTTTTAATTAAACCTTTAAATCCTATGGTTTGGAATTTAATGTAGGCCTCCTATATCTAGTTCAAATCCTTTTTCAATTATGATTCTCCTAAATCTTTTATTCTTCCTTCTTGTCGAGAAGGGGGAAACTCTCGTTCAGAGAAAATAAGTGCAGAGCTGAGGAAGAAGATGATAAAATGACTAACCCTCTCCAAAAAAACCCTAAAATGATGCTTATAAATGGAGAGAGAAAGAGTATAATCTTCTTGGCAACCCTGAAAGCTTTCCAGGTAAAAGGCACACTCTGAATCAGGGATGTCGGTGGTCCCTGATGCAAGTCTACTTTATTGTGGCCTCATTCTTATGAAATTTATAGAGGCGCTGCACACCTAACTGCCATCCTTGAAAAGGCACATTTACGTCGTTTTTGTTATTTGACTTTCTATTCCCAAATCTCGCCGTGTAAGGCTGAATATTAGCATCTCAATGTTGCCTTGCAGACGATGTCTCATTGCTTTCCTGCATCACAAAAGTTACGTGAGGTAGAATGACGCATTTAGAACAAATAAAATGTATATGTGCGATTAGAACATGTGTTATGTACATATGTATAACTGTTCACCTCGTACTGTAGAAGCAATTTAGGAACTCTCTCAAACTGCTCTCAGTTGTCAATTGTCTCAGGCTCCAGATCAGTGTACCAATTGAACGCATTTCCTTTTAGCGTTTGGACAAATTGCTTACAAGAGACATCCCCTAATTCTCTTCCAAGGGAGTACGAGAATGGCTTGATTCAGTAGTTTCTCGATTTTGCAACTGGTTCTTCAAATAAGCAATTTCATGATCTCTTTTCTCAACTGCCTTCATCAGAAGGTTGAGTTTTCTTTTCGTTTCCACCATCCTCTCATCGGAGTCTATATATGCCAACATAACATACATTACATCAGGATTTGGTGTTTCATTCTACTTGTCCACTTGCATCTTATCTTGGGAAGTGATCATCCCCTGATTCAGGCAGAATGCATGTTGGTCACTTGTCCACTCACATCTTGGGAAGTGATCATCTTCTGATTCAGGTGGAATGCATGTTGATCACTTCACACTTGCGATTTAATAACATCATCATCATTGCTTTGAGGAATGTCATATCTTTTATTTTAATCTCCTTTTCTTTCCTGTAGGAACATGGTGTATTTCACAGAGCTTTCAGACCACAGGAAGAAAAGTTTGGTTGTTCTGATGAATCAAGACCAACCTATGAATAGTGGAACCATTCTTCCAATAGAGACTTCGATTAAAGAGTCAAACTTTGGAATTAGATAAATCACACTTTCTACCTGAATGGTCTGTACAAAAGGTTCCATCCCAGCACTCTTTCACTAAAGTTTGGATTTTGCGATCTTCTCTACGCAACAAAAAGATAATTGTCAATCCATAACCAACATTGGGGTGTCACATCATTGAAAATCAGATTCATTTGGACCCCCGTGTTGAGATTCAATGGAGAATTTACTTATTACTGAGAATGACTATGATTTTCAATTACTCAAAATAAGAGATTACTACAAGGTTCCAATTTATATGCAGTTGTGATAGCTTCTTTGTACTTTTATGATCACAATAATGACATAATTCGGG

mRNA sequence

ATGATCGAGGAGGCTTTCGCCGAAATTTCGGTGCCGGAGACTTTCAAGAAGCGCGATTGCAAGTACCGAAGCATGGGGGTTTTGAATGGATCCATTTTTCTGTTTCATTATCCATACCATGGGGATGAAAGGAGCTTTGACGTTTGGCGGATGGACAGGGATAATGAATTGGTTTTATGGTCAACGCTTTTCACAATTGGCCCTGTTTCTGGTATTCAGACACCTTTGGCGTTCATGAGCTCGGATCAACTTTTAATGGAGACCAATGAGGGACAGCTGATTTTGTACAACATTAACACCCAACACTTCAAACACCTTCCACTTGAAGGCTGCCCGCGGGGGTCCCAAGCTACAGCTTTCATTAAGACTCTGTTGTCTGTCAATGACATCACTAGTTTAACCAACATTTTCCAGAGTAATTATGGAATAGCACCAGAGGAAAAGCAGCTTTCTGTCAGTGGCTGTAATTGGGGTGAAGTTGATTTGAATGGGAATATGCGTACTTTCTTGGTTGGTTCAAAGCAAGCATTTGAAGTGTCTTTAGCTGATGTTGCTCTAACAATACTTCAAGGGAAGAATGATGTTATGTTAGAGTTCCATGTGGACGATACTACAGGAGCTAATGAGGTCTTTCGTGATAAAATCATGTCTATGGCAGATGTTATTGCGGGCATTGAGGAAGCTGTGGTCACATTTGATGGTATTGGCATCCTCACTCCAAGTTTTTCTATTGTCTTAAGACGATGTCTCATTGCTTTCCTGCATCACAAAAGCAGAATGCATGTTGGTCACTTGTCCACTCACATCTTGGGAAGTGATCATCTTCTGATTCAGGAACATGGTGTATTTCACAGAGCTTTCAGACCACAGGAAGAAAAGTTTGGTTGTTCTGATGAATCAAGACCAACCTATGAATAG

Coding sequence (CDS)

ATGATCGAGGAGGCTTTCGCCGAAATTTCGGTGCCGGAGACTTTCAAGAAGCGCGATTGCAAGTACCGAAGCATGGGGGTTTTGAATGGATCCATTTTTCTGTTTCATTATCCATACCATGGGGATGAAAGGAGCTTTGACGTTTGGCGGATGGACAGGGATAATGAATTGGTTTTATGGTCAACGCTTTTCACAATTGGCCCTGTTTCTGGTATTCAGACACCTTTGGCGTTCATGAGCTCGGATCAACTTTTAATGGAGACCAATGAGGGACAGCTGATTTTGTACAACATTAACACCCAACACTTCAAACACCTTCCACTTGAAGGCTGCCCGCGGGGGTCCCAAGCTACAGCTTTCATTAAGACTCTGTTGTCTGTCAATGACATCACTAGTTTAACCAACATTTTCCAGAGTAATTATGGAATAGCACCAGAGGAAAAGCAGCTTTCTGTCAGTGGCTGTAATTGGGGTGAAGTTGATTTGAATGGGAATATGCGTACTTTCTTGGTTGGTTCAAAGCAAGCATTTGAAGTGTCTTTAGCTGATGTTGCTCTAACAATACTTCAAGGGAAGAATGATGTTATGTTAGAGTTCCATGTGGACGATACTACAGGAGCTAATGAGGTCTTTCGTGATAAAATCATGTCTATGGCAGATGTTATTGCGGGCATTGAGGAAGCTGTGGTCACATTTGATGGTATTGGCATCCTCACTCCAAGTTTTTCTATTGTCTTAAGACGATGTCTCATTGCTTTCCTGCATCACAAAAGCAGAATGCATGTTGGTCACTTGTCCACTCACATCTTGGGAAGTGATCATCTTCTGATTCAGGAACATGGTGTATTTCACAGAGCTTTCAGACCACAGGAAGAAAAGTTTGGTTGTTCTGATGAATCAAGACCAACCTATGAATAG

Protein sequence

MIEEAFAEISVPETFKKRDCKYRSMGVLNGSIFLFHYPYHGDERSFDVWRMDRDNELVLWSTLFTIGPVSGIQTPLAFMSSDQLLMETNEGQLILYNINTQHFKHLPLEGCPRGSQATAFIKTLLSVNDITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEVFRDKIMSMADVIAGIEEAVVTFDGIGILTPSFSIVLRRCLIAFLHHKSRMHVGHLSTHILGSDHLLIQEHGVFHRAFRPQEEKFGCSDESRPTYE

Homology

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BLAST of Spg010907 vs. NCBI nr
Match: XP_023531857.1 (FACT complex subunit SSRP1 [Cucurbita pepo subsp. pepo] >KAG6588385.1 FACT complex subunit SSRP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022232.1 FACT complex subunit SSRP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 6.8e-42
Identity = 102/140 (72.86%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DITSLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 81  DITSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 141 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDENHPPAQVFRDKIMSMAD 200

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BLAST of Spg010907 vs. NCBI nr
Match: XP_022928607.1 (FACT complex subunit SSRP1 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 6.8e-42
Identity = 102/140 (72.86%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DITSLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 81  DITSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 141 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDENHPPAQVFRDKIMSMAD 200

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BLAST of Spg010907 vs. NCBI nr
Match: XP_042969708.1 (FACT complex subunit SSRP1 isoform X2 [Carya illinoinensis])

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-41
Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           D+TSLTN F++  GI PEEKQLSVSG NWGEVDLNGN  +FLVGSKQAFEVSLADV+ T 
Sbjct: 81  DVTSLTNFFENTCGITPEEKQLSVSGRNWGEVDLNGNTLSFLVGSKQAFEVSLADVSQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANEVFRDKIMSMADVIAGIEEAVVTFDGIGILTP 241
           LQGKNDV+LEFHVDDTTGANEVFR+KIMSMADV AG EEAVVTF+GI ILTP
Sbjct: 141 LQGKNDVILEFHVDDTTGANEVFREKIMSMADVGAGGEEAVVTFEGIAILTP 192

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BLAST of Spg010907 vs. NCBI nr
Match: XP_004147459.1 (FACT complex subunit SSRP1 [Cucumis sativus] >KGN59592.1 hypothetical protein Csa_002635 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-41
Identity = 101/140 (72.14%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 81  DISSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 141 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDESRPPAQVFRDKIMSMAD 200

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BLAST of Spg010907 vs. NCBI nr
Match: KAG6580976.1 (FACT complex subunit SSRP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-41
Identity = 101/140 (72.14%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 130 DISSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 189

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 190 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDESHPPAQVFRDKIMSMAD 249

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BLAST of Spg010907 vs. ExPASy Swiss-Prot
Match: O04235 (FACT complex subunit SSRP1 OS=Vicia faba OX=3906 GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.5e-39
Identity = 90/140 (64.29%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           D+ SLTN FQ+ +GI  EEKQLSV+G NWGEVDLNGNM  F+VGSKQAFEVSLADV+ T 
Sbjct: 81  DVVSLTNFFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTN 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDV+LEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 141 LQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFVGDENRPSAQVFRDKIMSMAD 200

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BLAST of Spg010907 vs. ExPASy Swiss-Prot
Match: Q05153 (FACT complex subunit SSRP1 OS=Arabidopsis thaliana OX=3702 GN=SSRP1 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 9.9e-36
Identity = 83/140 (59.29%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           D+ SL++ FQS+YG  P+EKQLSVSG NWGEVDL+GN  TFLVGSKQAFEVSLADV+ T 
Sbjct: 81  DVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLTFLVGSKQAFEVSLADVSQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDV LEFHVDDT GANE                            VF D I++MAD
Sbjct: 141 LQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFVGDENRPPSQVFNDTIVAMAD 200

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BLAST of Spg010907 vs. ExPASy Swiss-Prot
Match: Q39601 (FACT complex subunit SSRP1 OS=Catharanthus roseus OX=4058 GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.4e-35
Identity = 88/140 (62.86%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           D+ SLT+  QS  GI PEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 81  DVASLTSYLQSTCGITPEEKQLSVSGKNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 140

Query: 189 LQGKNDVMLE-------------------FHV---------DDTTGANEVFRDKIMSMAD 241
           LQGKNDVMLE                   FHV         D+     +VFRDKIMSMAD
Sbjct: 141 LQGKNDVMLEFMWMILLEQMRKNSLMEISFHVPNSNTQFVGDENRPPAQVFRDKIMSMAD 200

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BLAST of Spg010907 vs. ExPASy Swiss-Prot
Match: Q9LGR0 (FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica OX=39947 GN=SSRP1-A PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-32
Identity = 78/140 (55.71%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           D++SLTN  Q N G++P+EKQLSVSG NWG +D+NGNM TF+VGSKQAFEVSLADV+ T 
Sbjct: 81  DVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINGNMLTFMVGSKQAFEVSLADVSQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           +QGK DV+LEFHVDDTTG NE                            V  + IM +AD
Sbjct: 141 MQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFLGDENRTAAQVLWETIMGVAD 200

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BLAST of Spg010907 vs. ExPASy Swiss-Prot
Match: Q9LEF5 (FACT complex subunit SSRP1 OS=Zea mays OX=4577 GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-30
Identity = 73/140 (52.14%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           D+++LTN  Q N G+ P+EKQLSVSG NWG +D++GNM TF+VGSKQAFEVSL DVA T 
Sbjct: 81  DVSNLTNFIQKNMGVTPDEKQLSVSGQNWGGIDIDGNMLTFMVGSKQAFEVSLPDVAQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           +QGK DV+LE HVDDTTGANE                            +  + I+  AD
Sbjct: 141 MQGKTDVLLELHVDDTTGANEKDSLMDLSFHVPTSNTQFVGDESRPPAHILWETILKFAD 200

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BLAST of Spg010907 vs. ExPASy TrEMBL
Match: A0A6J1EKE3 (FACT complex subunit SSRP1 OS=Cucurbita moschata OX=3662 GN=LOC111435463 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.3e-42
Identity = 102/140 (72.86%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DITSLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 81  DITSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 141 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDENHPPAQVFRDKIMSMAD 200

[Close]

BLAST of Spg010907 vs. ExPASy TrEMBL
Match: A0A6J1J6R0 (FACT complex subunit SSRP1 OS=Cucurbita maxima OX=3661 GN=LOC111482257 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.6e-42
Identity = 101/140 (72.14%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 81  DISSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 141 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDESHPPAQVFRDKIMSMAD 200

[Close]

BLAST of Spg010907 vs. ExPASy TrEMBL
Match: A0A0A0LG27 (FACT complex subunit SSRP1 OS=Cucumis sativus OX=3659 GN=Csa_3G827340 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.6e-42
Identity = 101/140 (72.14%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 81  DISSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 141 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDESRPPAQVFRDKIMSMAD 200

[Close]

BLAST of Spg010907 vs. ExPASy TrEMBL
Match: A0A6J1F4G5 (FACT complex subunit SSRP1 OS=Cucurbita moschata OX=3662 GN=LOC111442077 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.6e-42
Identity = 101/140 (72.14%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 81  DISSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 141 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDESHPPAQVFRDKIMSMAD 200

[Close]

BLAST of Spg010907 vs. ExPASy TrEMBL
Match: A0A5A7UCV3 (FACT complex subunit SSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008240 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-41
Identity = 101/140 (72.14%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T 
Sbjct: 70  DISSLTKYFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQ 129

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDVMLEFHVDDTTGANE                            VFRDKIMSMAD
Sbjct: 130 LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDESRPPAQVFRDKIMSMAD 189

[Close]

BLAST of Spg010907 vs. TAIR 10
Match: AT3G28730.1 (high mobility group )

HSP 1 Score: 152.1 bits (383), Expect = 7.0e-37
Identity = 83/140 (59.29%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 129 DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTI 188
           D+ SL++ FQS+YG  P+EKQLSVSG NWGEVDL+GN  TFLVGSKQAFEVSLADV+ T 
Sbjct: 81  DVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLTFLVGSKQAFEVSLADVSQTQ 140

Query: 189 LQGKNDVMLEFHVDDTTGANE----------------------------VFRDKIMSMAD 241
           LQGKNDV LEFHVDDT GANE                            VF D I++MAD
Sbjct: 141 LQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFVGDENRPPSQVFNDTIVAMAD 200

[Close]

BLAST of Spg010907 vs. TAIR 10
Match: AT3G06240.1 (F-box family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-06
Identity = 36/131 (27.48%), Postives = 62/131 (47.33%), Query Frame = 0


Query: 4   EAFAEISVPETFKKRDCKYR----SMGVLNGSIFLFHYPYHGDERSFDVWRMDRDNELVL 63
           E F E+ VP+  +  DC +R     +G LNG + + +  Y   +   D+W M    E   
Sbjct: 297 EEFREMPVPD--EAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHD---DIWVMSEYGEAKS 356

Query: 64  WSTLFTIGPVSGIQTPLAFMSSDQLLMETNEGQLILYNINTQHFKHLPLEG--CPRGSQA 123
           WS +  I  +     PL    +D+ ++   +G L+LYN  T    +L + G     G +A
Sbjct: 357 WSRI-RINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFETNASSNLGICGVKLSDGFEA 416

Query: 124 TAFIKTLLSVN 129
             ++++L+S N
Sbjct: 417 NTYVESLISPN 421

[Close]

BLAST of Spg010907 vs. TAIR 10
Match: AT3G23880.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-05
Identity = 34/114 (29.82%), Postives = 53/114 (46.49%), Query Frame = 0


Query: 18  RDCKYRSMGVLNGSIFLFHYPYHGDERSFDVWRMDRDNELVLWSTLFTIGPVSGIQTPLA 77
           R C   ++G L G + +  Y    +    DVW M    E+  WS L +I  ++    PL 
Sbjct: 256 RGCFTMTLGDLRGCLSMVCYCKGANA---DVWVMKEFGEVYSWSKLLSIPGLTDFVRPLW 315

Query: 78  FMSSDQLLMETNEGQLILYNINTQHFKHLPLEGCPRGSQ-ATAFIKTLLSVNDI 131
                 +L+E   G L LYN +   F H P+     G + A  ++KT++S ND+
Sbjct: 316 ISDGLVVLLEFRSG-LALYNCSNGRF-HYPVSNSISGCRDAKVYLKTMVSPNDL 364

The following BLAST results are available for this feature:

BLAST of Spg010907 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531857.1	6.8e-42	72.86	FACT complex subunit SSRP1 [Cucurbita pepo subsp. pepo] >KAG6588385.1 FACT compl...	[more]
XP_022928607.1	6.8e-42	72.86	FACT complex subunit SSRP1 [Cucurbita moschata]	[more]
XP_042969708.1	1.5e-41	82.14	FACT complex subunit SSRP1 isoform X2 [Carya illinoinensis]	[more]
XP_004147459.1	2.0e-41	72.14	FACT complex subunit SSRP1 [Cucumis sativus] >KGN59592.1 hypothetical protein Cs...	[more]
KAG6580976.1	2.0e-41	72.14	FACT complex subunit SSRP1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg010907 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04235	2.5e-39	64.29	FACT complex subunit SSRP1 OS=Vicia faba OX=3906 GN=SSRP1 PE=2 SV=1	[more]
Q05153	9.9e-36	59.29	FACT complex subunit SSRP1 OS=Arabidopsis thaliana OX=3702 GN=SSRP1 PE=1 SV=2	[more]
Q39601	6.4e-35	62.86	FACT complex subunit SSRP1 OS=Catharanthus roseus OX=4058 GN=SSRP1 PE=2 SV=1	[more]
Q9LGR0	1.0e-32	55.71	FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica OX=39947 GN=SSRP1-A...	[more]
Q9LEF5	3.6e-30	52.14	FACT complex subunit SSRP1 OS=Zea mays OX=4577 GN=SSRP1 PE=1 SV=1	[more]

BLAST of Spg010907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKE3	3.3e-42	72.86	FACT complex subunit SSRP1 OS=Cucurbita moschata OX=3662 GN=LOC111435463 PE=3 SV...	[more]
A0A6J1J6R0	9.6e-42	72.14	FACT complex subunit SSRP1 OS=Cucurbita maxima OX=3661 GN=LOC111482257 PE=3 SV=1	[more]
A0A0A0LG27	9.6e-42	72.14	FACT complex subunit SSRP1 OS=Cucumis sativus OX=3659 GN=Csa_3G827340 PE=3 SV=1	[more]
A0A6J1F4G5	9.6e-42	72.14	FACT complex subunit SSRP1 OS=Cucurbita moschata OX=3662 GN=LOC111442077 PE=3 SV...	[more]
A0A5A7UCV3	1.3e-41	72.14	FACT complex subunit SSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Spg010907 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28730.1	7.0e-37	59.29	high mobility group	[more]
AT3G06240.1	2.9e-06	27.48	F-box family protein	[more]
AT3G23880.1	1.4e-05	29.82	F-box and associated interaction domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024954	SSRP1 domain	PFAM	PF03531	SSrecog	coord: 154..218 e-value: 1.5E-16 score: 60.2
IPR038167	SSRP1 domain superfamily	GENE3D	2.30.29.220		coord: 145..222 e-value: 4.1E-16 score: 60.5
None	No IPR available	PANTHER	PTHR45849	FACT COMPLEX SUBUNIT SSRP1	coord: 128..221
None	No IPR available	PANTHER	PTHR45849:SF4	FACT COMPLEX SUBUNIT SSRP1	coord: 128..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010907.1	Spg010907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0000741	karyogamy
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0035101	FACT complex
molecular_function	GO:0042393	histone binding
molecular_function	GO:0031491	nucleosome binding