Spg010901 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010901
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S13
Location	scaffold10: 6998755 .. 7002911 (-)
RNA-Seq Expression	Spg010901
Synteny	Spg010901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAACGAGACCAAGAAAAGAGAGAGATAATGAGGAAGGGGAGGTACCTGTTACCCCCGAAGCACCGAAAGCTAAGGCAAAGAGAAAGAAAACACCAGAAGAGAAAGAGGCTAAGAGGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGTGCAGAAGGTACACTACAAGAAAAACTGCATTACTTGACACTTCAAATTTTATATTAGTTGACATTTTCTAAAAAAAATGTCAAGAATTTGCATTTTTAACTAAAAAACGTCAAGAAAAATGTAAAAACACGAAGTTTGACGGAGTTTTTCGGATTTTGTTTCACGCCACAGAATACTTGACACTTTTAAAATGTCGAGAACTATAATAATTTACTTGACATTTAAAAAATATCAAGTTTTATCCCGATTTACTTGCTACATTTTAAATGTCAAGTATTACTTGTCTAGGGTTTATTTAAAGAAAATAAAAAGGATTTTTATTCTATTAAAGAAAAAGAAAAAAAAATCTTTCTCTCCTCCTTCAACCCTCACGCACGAAGCCCCCTGTGTTTTTCTTTAGTCGCAGACCCCCTCGATTTCCAGCCTTGAGCCGCCCAGCCCCGCCGCCGATCCGCCGTCGCCGTCGCCAGTCCGTCGCGCCGCCCTGCCTTCTCGCACGCTCTCTCTCTCCGTCGTTCTCCAGTTCGTCTCCCTCTCTCTATCTCCGTTCTGCCCGCAAATCCGGCTCACGCCGTCGTTGTGTCCCCATCGGAGTATCGCGCTGCCGTCGACCAACGCTCATGGTTAGTCGTCGATGGGTTTTGGCTTTGGTTTCTTGTGGGATTTGGGTGTGGATTTCTCAAGTGGTCACCGGTCATGGTTAGTCGTCGATGTTAAGCGTGGGTTTGTTCATCGTCCGTTCAAATTGTCACTGCTAATAGTCTAGATCTGTTGCTGCTATGGGTTTAGATTTAGGTTTCATGGGTTTGTCCACCGTTTTCTAGATATCTATCGTTGTTGTGGGTCTAGATCTAGGTTGTGTGAGTTTAGATTGTGGGTTTGTCTGCCAGTTTCTTGATATTCGTCACCGTTGTGGGTTTAGATTTAGGTTTCGTGAGTTTAGATCGTGGGTTTATCGACCATTTTTTTATAAATTCTTTTCTTTGTTGGTCATTTGGACAGTTTAAACTTTGCTATGTTCTTCGATTGCTTTAGATCTGACCCATCTTCGCAAGTTTGGCTCTCTCTGGAAATTCTCTTCCAATTTTGCTGTAAAATTCTTTCATATTTTCTAGAAAATTTATATATTTCTTTATTTTTTTCTGGTTGTTTCTCTCCTGTATCTTTGTGCATGTCTGATTTTGAATGTCTGCAAAGGTTTATGAGATTCTGAAGAAAATGAATGGACATGGATATTAGTTGTGCATAGCCTTGGAAATTTTAAAAAAAAAAAAAAAAGGCTTAATCATTTTGTTGGTTTTGTTGCTCATTAGAGGGAAATTTTGGATTTGATTGTCTTTGGAACTTAGCTGCTGAAAGGAATGTAAAATTTTCTATTTTGAAATGAGTCTTATTTCCTTTATTTTCTTGGCTGGCTTATTTCCCAAGAAGATTCTATGAAATCTCTCTTTGAAAGTGAAGATATTGTTCTTTGGCATCAAATTCTCTTTTACACCGTCTTCATTTTCTTAAAATACTTTCTGGATTATATATATTGTTTTGTAGACGTTGATTGCTCTATTTTGCAGTTTATAAAAAGCTACAAATTTGCACCCAAATAGTTAGGTATCCTGTTTCTTTCGTCATTTGAAATGCTACTTTTCTTTAGTGTACTGGCTTATGTCAAATATTGAATGAATGTAGGTTGTTATAGTTCTTTGCCTTTTGTATTCAATACATCTCATCAGTTACCTATTTCTTGTTACTTATTTTAAAATGCCTTGTATGATAGATAGACTTTATACCAATTCTTTCACCCAAAAGTTCAATTAATTTTTTCCAAGTTTAGCTCTCCATTAAAGTCTCCAATGTGTGTTTTTCTCCCTTTAAAAACATATGAATGAGAAGAAAAACCCATCCAAACAGGGAAGTTTTAGTTTAGTTGTTATGTTCATAAGTTCCGATAAGTTTGTTTAATTATTATGTTTATAAATTTTGGTGTTAATATTTGGAGTCTTGTTGTGAATCTGAAGTGTTGTGAGGTTGTAGTTTCAATCTCTAAATTAAATGTCTTTGTTCTTCTTCTTTGTAATGATTTTTTTTTTTTTTTTTGCAAAGTCAATTAAACAATGGAGGCGTCTCATCCAAACAAAAAATTGTCGAGGAAGTGAGCTGTTGCTATAACTTTCAGTGTTTCTCTTTAACCAAACAGAAACTCACTTTCGTAATTGATTACGGGAAACCAAATTGGGAGAAGAATCCAGCGACGGTGGCCCATAGAGTATACTAAGATATTTACCCTTCTACTTATTTTTTCTATTGGTGTGGTATGCTTTGTAGGCTACGCTAGAAAATGCTGGAAGGCAAGGTTTGGGGTTGCTTCAAGAGTTATGTGAGACTTTTTTTTTTTTCATTTGCTTTTATTTTTGCAAGTGAAATTATTGCACTCGAAAAATGCCATAATATTATGGAAATTATATGTGACCATTTTACACTTACTTTATGGTGTTAATAGGTGTTGGAACTTTAGAATTGTTCATATTGGGTTGATAATTCTTGCAATTTTGGAATTGTTTATAAGATTGATCGTTTGGTGATGTTGAACACATGAACTTTGTTAATGTTATTGGTGAGCCTCATCTACCTTTCCTCTAAACTTCTATTTTATACATTAATCAGAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGCTCAGGACTAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGGAACCTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGATAAGGATTCCAAGTTCAGGTTGATTTTAAGGCACGGAAGCACATTAATTATTTAATAGGTAGTTTGTGATTTTGAATAGATGGTGGAGATAGGTATTATGTAATTTTGAATATACGGTGGAAATGAGTGTAAAGTTCTTCATTTTGGAATTGTCCAAATGGAGTTGATAGGTCCTGTAATTTTGTAATTGTTCATGTGGGTCGATAGGTCTTGTAATTTTTGGAATTGTTCATATGGGTTGATAGTTGTAATTTTGGAATTGCTCATATGGAGGTTGGATACTTTTGTAATGTTGAAGATATGAATTTTATTGAAGTTATTGGAAGAAATTTTGTTGATGGATCTTGAATGTGTATTTGTTTATTTGGTTGATCAATATATCAAGTTGTTGGAATGCAATGCAGGAGATTCAAGATAATAGGGAACAACTATTATAATTGAAAAAAAAAATTACCAACAAACTTGACATGTAAAATGCGTCAACAACTTTTTAAATTGACATTTCTGAAATGTCAAGATAAAGTACCATTTGACATGTTAGAGCTTTCAAGTTTTAACAAATATGATATTTAATAGCTGTCAAGAAATCTATATACATGACGCTTTATAAGTGTCAAAAATTTAATATTCTTGACGTTTCATATATATCAAGTAAAAGATGTCTTGACGCTTCTCGTTTGTCACATTTTCGATACCTTATTCTTGACAGTGGTTCTCTCGACGCTTTTAAAAGCGTCAAGAGTATTAACAGTTGACATTCCAAAAGCGTCAAGTAAGTCAATTTTTCTCGTATTGGTAGTCGAGGAGGTTGCTGTCGAGGCAGTTGAAGAAGGCAATCCGAAAGAACCTGAAGGACAAAACCCAGAGCAGACTGAGCCGAGAGTTTCGGATACAGAGGAATTCGAGAGGAAAATACAGAGGATGTTCAGGAAACAGGCAATGAGCAGGGGGAACAAGAGCAGGAGGCTCGAGTGGAGGTGATCATGCCGGAAGTGCCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACCCGTCAAGGTAGTCCGAACTGATACCCCATCACCACCGTCGACGAATTCTGAGAAAGAAAATGCAGAAAGAGAGGAACAAGAGAAAAAGGAGGTTGTTGACAGAGCGAGAGAGGAAGCAAGAAAGAAAGCAGCGGAAGAAGCTTTGACAAAGCATCAAGAAGACAGAGGCAAATGA

mRNA sequence

ATGGCGAAAACGAGACCAAGAAAAGAGAGAGATAATGAGGAAGGGGAGGTACCTGTTACCCCCGAAGCACCGAAAGCTAAGGCAAAGAGAAAGAAAACACCAGAAGAGAAAGAGGCTAAGAGGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGTGCAGAAGCCCCGCCGCCGATCCGCCGTCGCCGTCGCCAGTCCGTCGCGCCGCCCTGCCTTCTCGCACGCTCTCTCTCTCCGTCGTTCTCCAGTTCGTCTCCCTCTCTCTATCTCCGTTCTGCCCGCAAATCCGGCTCACGCCGTCGTTGTGTCCCCATCGGAGTATCGCGCTGCCGTCGACCAACGCTCATGGTTAGTCGTCGATGGGTTTTGGCTTTGGTTTCTTGTGGGATTTGGGTGTGGATTTCTCAAGTGGTCACCGGTCATGGCTACGCTAGAAAATGCTGGAAGGCAAGGACTAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGGAACCTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGATAAGGATTCCAAGTTCAGAGGAATTCGAGAGGAAAATACAGAGGATGTTCAGGAAACAGGCAATGAGCAGGGGGAACAAGAGCAGGAGGCTCGAGTGGAGGTGATCATGCCGGAAGTGCCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACCCGTCAAGGTAGTCCGAACTGATACCCCATCACCACCGTCGACGAATTCTGAGAAAGAAAATGCAGAAAGAGAGGAACAAGAGAAAAAGGAGGTTGTTGACAGAGCGAGAGAGGAAGCAAGAAAGAAAGCAGCGGAAGAAGCTTTGACAAAGCATCAAGAAGACAGAGGCAAATGA

Coding sequence (CDS)

ATGGCGAAAACGAGACCAAGAAAAGAGAGAGATAATGAGGAAGGGGAGGTACCTGTTACCCCCGAAGCACCGAAAGCTAAGGCAAAGAGAAAGAAAACACCAGAAGAGAAAGAGGCTAAGAGGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGTGCAGAAGCCCCGCCGCCGATCCGCCGTCGCCGTCGCCAGTCCGTCGCGCCGCCCTGCCTTCTCGCACGCTCTCTCTCTCCGTCGTTCTCCAGTTCGTCTCCCTCTCTCTATCTCCGTTCTGCCCGCAAATCCGGCTCACGCCGTCGTTGTGTCCCCATCGGAGTATCGCGCTGCCGTCGACCAACGCTCATGGTTAGTCGTCGATGGGTTTTGGCTTTGGTTTCTTGTGGGATTTGGGTGTGGATTTCTCAAGTGGTCACCGGTCATGGCTACGCTAGAAAATGCTGGAAGGCAAGGACTAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGGAACCTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGATAAGGATTCCAAGTTCAGAGGAATTCGAGAGGAAAATACAGAGGATGTTCAGGAAACAGGCAATGAGCAGGGGGAACAAGAGCAGGAGGCTCGAGTGGAGGTGATCATGCCGGAAGTGCCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACCCGTCAAGGTAGTCCGAACTGATACCCCATCACCACCGTCGACGAATTCTGAGAAAGAAAATGCAGAAAGAGAGGAACAAGAGAAAAAGGAGGTTGTTGACAGAGCGAGAGAGGAAGCAAGAAAGAAAGCAGCGGAAGAAGCTTTGACAAAGCATCAAGAAGACAGAGGCAAATGA

Protein sequence

MAKTRPRKERDNEEGEVPVTPEAPKAKAKRKKTPEEKEAKRRRRQQRAEDQEIVQKPRRRSAVAVASPSRRPAFSHALSLRRSPVRLPLSISVLPANPAHAVVVSPSEYRAAVDQRSWLVVDGFWLWFLVGFGCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREENTEDVQETGNEQGEQEQEARVEVIMPEVPKRRRVKRKAGPVKVVRTDTPSPPSTNSEKENAEREEQEKKEVVDRAREEARKKAAEEALTKHQEDRGK

Homology

[Close]

BLAST of Spg010901 vs. NCBI nr
Match: KHJ41186.1 (ribosomal protein S15 [Trichuris suis])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 198 GVAQIRWATGSKVLRILKSKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 257

Query: 193 E 194
           E
Sbjct: 258 E 258

[Close]

BLAST of Spg010901 vs. NCBI nr
Match: KRY56989.1 (40S ribosomal protein S13 [Trichinella britovi])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 124 GIAQVRWATGNKILRILKAKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 183

Query: 193 E 194
           E
Sbjct: 184 E 184

[Close]

BLAST of Spg010901 vs. NCBI nr
Match: KRY69987.1 (U3 small nucleolar RNA-associated protein 15 -like protein [Trichinella pseudospiralis])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 745 GIAQVRWATGNKILRILKAKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 804

Query: 193 E 194
           E
Sbjct: 805 E 805

[Close]

BLAST of Spg010901 vs. NCBI nr
Match: KRY33283.1 (U3 small nucleolar RNA-associated protein 15 -like protein [Trichinella spiralis])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 698 GIAQVRWATGNKILRILKAKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 757

Query: 193 E 194
           E
Sbjct: 758 E 758

[Close]

BLAST of Spg010901 vs. NCBI nr
Match: KRX22653.1 (40S ribosomal protein S13 [Trichinella nelsoni] >KRX40092.1 40S ribosomal protein S13 [Trichinella murrelli] >KRY11800.1 40S ribosomal protein S13 [Trichinella patagoniensis] >KRZ51747.1 40S ribosomal protein S13 [Trichinella nativa] >KRZ93797.1 40S ribosomal protein S13 [Trichinella sp. T8])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 100 GIAQVRWATGNKILRILKAKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 159

Query: 193 E 194
           E
Sbjct: 160 E 160

[Close]

BLAST of Spg010901 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-10
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 153 GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN 195
           GLAPEI EDLYHLIK+ VSIRKHLERNRKDKDSKFR I  E+
Sbjct: 79  GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of Spg010901 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.8e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 153 GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN 195
           GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E+
Sbjct: 79  GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of Spg010901 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.8e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 153 GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN 195
           GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E+
Sbjct: 79  GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of Spg010901 vs. ExPASy Swiss-Prot
Match: P62299 (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 152 QGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN 195
           +G+APEI EDLYHLIK+ V+IRKHLERNRKDKDSK+R I  E+
Sbjct: 78  KGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of Spg010901 vs. ExPASy Swiss-Prot
Match: P62300 (40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-09
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 152 QGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN 195
           +G+APEI EDLYHLIK+ V+IRKHLERNRKDKDSK+R I  E+
Sbjct: 78  KGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of Spg010901 vs. ExPASy TrEMBL
Match: A0A0B1PKQ1 (40S ribosomal protein S13 OS=Trichuris suis OX=68888 GN=D918_08773 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.8e-09
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 198 GVAQIRWATGSKVLRILKSKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 257

Query: 193 E 194
           E
Sbjct: 258 E 258

[Close]

BLAST of Spg010901 vs. ExPASy TrEMBL
Match: A0A5S6QVF7 (40S ribosomal protein S13 OS=Trichuris muris OX=70415 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 59  GVAQVRWATGSKILRILKSKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 118

Query: 193 E 194
           E
Sbjct: 119 E 119

[Close]

BLAST of Spg010901 vs. ExPASy TrEMBL
Match: A0A0V0WEM0 (40S ribosomal protein S13 OS=Trichinella sp. T6 OX=92179 GN=RPS13 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 179 GIAQVRWATGNKILRILKAKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 238

Query: 193 E 194
           E
Sbjct: 239 E 239

[Close]

BLAST of Spg010901 vs. ExPASy TrEMBL
Match: A0A1Y3EJD5 (40S ribosomal protein S13 OS=Trichinella nativa OX=6335 GN=D917_02156 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 59  GIAQVRWATGNKILRILKAKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 118

Query: 193 E 194
           E
Sbjct: 119 E 119

[Close]

BLAST of Spg010901 vs. ExPASy TrEMBL
Match: A0A0V1KWP3 (40S ribosomal protein S13 OS=Trichinella nativa OX=6335 GN=RPS13 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 133 GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIRE 192
           G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  
Sbjct: 100 GIAQVRWATGNKILRILKAKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLILV 159

Query: 193 E 194
           E
Sbjct: 160 E 160

[Close]

BLAST of Spg010901 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-11
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 153 GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN 195
           GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E+
Sbjct: 79  GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of Spg010901 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-11
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 153 GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN 195
           GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E+
Sbjct: 79  GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

The following BLAST results are available for this feature:

BLAST of Spg010901 vs. NCBI nr


Match Name	E-value	Identity	Description
KHJ41186.1	1.6e-08	60.66	ribosomal protein S15 [Trichuris suis]	[more]
KRY56989.1	3.6e-08	60.66	40S ribosomal protein S13 [Trichinella britovi]	[more]
KRY69987.1	3.6e-08	60.66	U3 small nucleolar RNA-associated protein 15 -like protein [Trichinella pseudosp...	[more]
KRY33283.1	3.6e-08	60.66	U3 small nucleolar RNA-associated protein 15 -like protein [Trichinella spiralis...	[more]
KRX22653.1	3.6e-08	60.66	40S ribosomal protein S13 [Trichinella nelsoni] >KRX40092.1 40S ribosomal protei...	[more]

BLAST of Spg010901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	3.0e-10	83.33	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59223	6.8e-10	80.95	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	6.8e-10	80.95	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P62299	2.0e-09	74.42	40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2	[more]
P62300	2.0e-09	74.42	40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2	[more]

BLAST of Spg010901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0B1PKQ1	7.8e-09	60.66	40S ribosomal protein S13 OS=Trichuris suis OX=68888 GN=D918_08773 PE=3 SV=1	[more]
A0A5S6QVF7	1.3e-08	60.66	40S ribosomal protein S13 OS=Trichuris muris OX=70415 PE=3 SV=1	[more]
A0A0V0WEM0	1.7e-08	60.66	40S ribosomal protein S13 OS=Trichinella sp. T6 OX=92179 GN=RPS13 PE=3 SV=1	[more]
A0A1Y3EJD5	1.7e-08	60.66	40S ribosomal protein S13 OS=Trichinella nativa OX=6335 GN=D917_02156 PE=3 SV=1	[more]
A0A0V1KWP3	1.7e-08	60.66	40S ribosomal protein S13 OS=Trichinella nativa OX=6335 GN=RPS13 PE=3 SV=1	[more]

BLAST of Spg010901 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	4.8e-11	80.95	Ribosomal protein S13/S15	[more]
AT4G00100.1	4.8e-11	80.95	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 247..287
None	No IPR available	GENE3D	1.10.287.10		coord: 156..195 e-value: 6.6E-14 score: 54.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 151..192
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 151..192
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 152..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010901.1	Spg010901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome