Spg010880 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010880
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold10: 5186801 .. 5190050 (-)
RNA-Seq Expression	Spg010880
Synteny	Spg010880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTTACATAGGCACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGTTGAAGAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATCGCTGAATCAAGCCAAACATCCGCTGCAAAGAATAATGACAAAGGGAAGGCTGTCATGCAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCGCTGTCCGTTCAGCAACTCCAAGATATGATTATGAGCTCAATTAGAGCTCAATATGGTGGACCTACTCAAAATTCTCTTATGTATTCCAAACCATACACTAAGAGAATTGACAACTTGAGGATGCCTACCGGGTTTCAACCTCCAAAATTTCAACAACTTGATGGAAAGGGGAACCCTAAGCAGCATATTGCTCACTTTGTTGAGACATGCGAGAATGCTGGGACTCGTGGAGATCTCCTAGTTAAACAATTTGTCCGAACCTTAAAAGGAAATGCCTTTGATTGGTATACTGATTTAGAGCCAGAGATGATCGATAGTTGGGAACAATTCGAAAGAGAGTTCCTAAATCGCTTTTATAGCACAAGGCGAACTGTCAGCATGACAGAACTCACAAATACAAAACAACGGAAAGGTGAGCCTGTCATTGATTACATTAATCGTTGGAGAGCTCTGAGTCTTGATTGCAAAGACCGACTCACCGAATTATCTGCTGTGGAAATGTGTATGCAAGGAATGCACTGGGAACTTCTTTATATATTGCAGGGCATAAAACCCCGCACCTTTGAAGAATTAGCAACTCGCACTCATGACATGGAGCTAAGTATTACTACTAGAGGGAATAAGGAATTTCCAGTCCCCGATGTAAAGAAGGAGAAGAAAGAAATGAAGAGCACCGGGAAAACCTCGAAGGGTGCTACAAGAGAATCCATGGTCGTCAATACGACCCCTCTGAAGTTTACTTCTAACAAGAGAGAAAATAAAATAGAGAAGCGTCAAAATGAAGGCGAGAAACAGCGCTTGACTTTGAAAGAAAGACAAGAAAAAATCTATCCTTTTCCAGACACTGACATCCCAGATATGTTAGAACAACTGTTGGACAACAAACTTATTGAACTCCCTGAAAGCAAACGACCCGAAGAGAGGGGAAAAGTAAATGATCCCAACTACTGTAAATATCACCGAGTCGTCAGTCATCCAGTGGAGAAATGTTTTGTGTTAAAGGAGCTAATCTTGAAGTTAGCTCGAGAAAAGAAAATCGAGCTAGATCTTGATGAAGTAGCTCAGGCAAATCACGCTGCCATAGTAACTCATCCTAGTGTCCAGTCACCCATAAGTTTACTTTATGATCAGAGAGGAAGCTTAATCCAATTTGGCACCTTTGAACCTATTATCGTTTGGTCTCAACCAAAGGCCCCAGAAAATGACTTCCCAGAAAGGGCTCTCTACGATGAGGATATTCAAGAAAAGATTAAGCAAATTGAAGACAAAGATGGAGGTTGGACACTTGTAACCCGACGGAAGAACCGAAAGCAAAATTGGGTTCAAAAGGAATCTCGTTTGTTTCAAGAACGCAAAAGAAAAGGCAGACCTCGAAGGAAAAACGGGAAGAAGTATGTGAGAAGGCTCAAGCCTATCTTAGAGGGAAGTGAGGAGCATATCCAACCTCCACATTCGATAACGCTAAAAGAATTTTTCCCAAGAACTTTTCTTTCAGTAATCAATCAAACTGTTACATGTCACGTCGTTAATGTGACAGAAGATGATAATTCTACATCAACCACGTCAGAAGTAGTCACGAAACTGGAAGACCTACCATCCTTCAATATAGATGATTTACTGTCACTTCCTCAAGAGGCCAAAAATACTCTTATTGAGGTGTTAAAGGATTGTAAACCATCTACTTCTCAGACAAGATCTACTACTTGGGTCGAAGCCTCATAATAGGCCTTTGTTTGTCTCAGGCTACATCAGAGAGCAAAAAGTTAGCCGAATTCTCATTGATGATGGTTCTGCCGTTAACATAATGCCCAAGTCTACCATGAACCAACTTGGCATTCTGATGCAAGAATTATCAAATAGTAAGTTGGTAATTCAAGGATTTAACCAAGGCGGGCAACGTGCGATTGGCATGATTCGCCTAGAGCTCATTATTGGAGATTTAAAGGCCAACACCCTATTTCATGTTATAGACTCTAGGACCACCTACAAGTTGTTACTAGGTCGCCCCTGGATTCATGAAAATGGAGTAGTTACTTCCACGCTGCACCAATGCTTTAAATTCTATCAAGATGGTATCAAGAAGGTTGATGCTGATACCAACCCCTTTTCAGAGGCTGAGTCTCATTATGCAGATGCGAAGTTTTATATGAAGAATGACAGTGTAGGGGAAGCTATGCCGTTAGAAGTTCCTCTGATAAGAAGTAATGACAAATCAGAGCGACAGACAAGCACGGGAAAAGAGCTGAATGAAAAATCAAGTGCTTCTAATAATCAGGAAAGCAAGGTATCTCCTAGCCAAACAAAAGCTAAAGTGGCGATAAGTGAGAAGATACTATGTTCAAAAGAGAAGAAGACAAATGCTCCTGTCTTACGCTATGTTCCCTTATCTCGACGCAAGAAGGGTGATTCGCCATTTGCAAAATGCTCCAATAATTTAAGAGTTGGCGACATTGAAATTTTGAAAGAGAGTTTCATTGCACCTCTTACAAAGATATCTAAACAAGAGGTTAAAGACAAACAAATAGAAGCAACTCTGCCTGAAAGACGAACAGAAGAGGGTTTTGATCCTAAAGCATACAAACTCTTGGCAAAGGTAGGTTATGATTTCACAGCGCATACTGAGTTTAAAAGTTTACGGATCTTTGACCAAAGGCCTGAACTTTCCTCAACACAGAAGAAACTTCAAAAGGAGGGTCATGTTATACCCACCTCAAGAGCTGGCCTTGGATATAAATCCCCTGAGCCGGTTCGAATCACAAGGAAAGGGAAAGCGAAAGTTGCAGATACGCTTCATATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTTTGTTACATGA

mRNA sequence

ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTTACATAGGCACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGCCCCAGAAAATGACTTCCCAGAAAGGGCTCTCTACGATGAGGATATTCAAGAAAAGATTAAGCAAATTGAAGACAAAGATGGAGGTTGGACACTTAAGAAACTTCAAAAGGAGGGTCATGTTATACCCACCTCAAGAGCTGGCCTTGGATATAAATCCCCTGAGCCGGTTCGAATCACAAGGAAAGGGAAAGCGAAAGTTGCAGATACGCTTCATATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTTTGTTACATGA

Coding sequence (CDS)

ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTTACATAGGCACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGCCCCAGAAAATGACTTCCCAGAAAGGGCTCTCTACGATGAGGATATTCAAGAAAAGATTAAGCAAATTGAAGACAAAGATGGAGGTTGGACACTTAAGAAACTTCAAAAGGAGGGTCATGTTATACCCACCTCAAGAGCTGGCCTTGGATATAAATCCCCTGAGCCGGTTCGAATCACAAGGAAAGGGAAAGCGAAAGTTGCAGATACGCTTCATATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTTTGTTACATGA

Protein sequence

MIWTQMAEPNQGGMVIQENPLFGYSTSSSEQAKETSDPDVMSVMMAYIGTGEERMAELERKVNMLMKAAPENDFPERALYDEDIQEKIKQIEDKDGGWTLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFVT

Homology

[Close]

BLAST of Spg010880 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE  + 
Sbjct: 266 TQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE-KEGDNQ 325

Query: 159 RTSAFDRIGPFV 171
           RTS FDRI P V
Sbjct: 326 RTSTFDRISPHV 336

[Close]

BLAST of Spg010880 vs. NCBI nr
Match: KAA0054152.1 (uncharacterized protein E6C27_scaffold131G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE+   
Sbjct: 281 TQKKLLQEGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE-KEDDSQ 340

Query: 159 RTSAFDRIGPFV 171
           RTSAFDRI P V
Sbjct: 341 RTSAFDRISPHV 351

[Close]

BLAST of Spg010880 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE  + 
Sbjct: 292 TQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEE-KEGDNQ 351

Query: 159 RTSAFDRIGPFV 171
           RTS FDRI P V
Sbjct: 352 RTSTFDRISPHV 362

[Close]

BLAST of Spg010880 vs. NCBI nr
Match: KAA0033244.1 (uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa] >TYK19597.1 uncharacterized protein E5676_scaffold9G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE    
Sbjct: 28  TQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMEE-KEGDSQ 87

Query: 159 RTSAFDRIGPFV 171
           RTSAFDRI P V
Sbjct: 88  RTSAFDRISPHV 98

[Close]

BLAST of Spg010880 vs. NCBI nr
Match: TYK25790.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-16
Identity = 50/72 (69.44%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITVEE+ DS + KE    
Sbjct: 782 TKKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVEEV-DSMKEKEGDSQ 841

Query: 159 RTSAFDRIGPFV 171
           R SAFDRI P V
Sbjct: 842 RISAFDRISPHV 852

[Close]

BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.0e-17
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE  + 
Sbjct: 266 TQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE-KEGDNQ 325

Query: 159 RTSAFDRIGPFV 171
           RTS FDRI P V
Sbjct: 326 RTSTFDRISPHV 336

[Close]

BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-17
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE  + 
Sbjct: 292 TQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEE-KEGDNQ 351

Query: 159 RTSAFDRIGPFV 171
           RTS FDRI P V
Sbjct: 352 RTSTFDRISPHV 362

[Close]

BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5A7UEC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00760 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-17
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE+   
Sbjct: 281 TQKKLLQEGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE-KEDDSQ 340

Query: 159 RTSAFDRIGPFV 171
           RTSAFDRI P V
Sbjct: 341 RTSAFDRISPHV 351

[Close]

BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5A7SPV8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00010 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE    
Sbjct: 28  TQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMEE-KEGDSQ 87

Query: 159 RTSAFDRIGPFV 171
           RTSAFDRI P V
Sbjct: 88  RTSAFDRISPHV 98

[Close]

BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5D3DR73 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00350 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 50/72 (69.44%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITVEE+ DS + KE    
Sbjct: 782 TKKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVEEV-DSMKEKEGDSQ 841

Query: 159 RTSAFDRIGPFV 171
           R SAFDRI P V
Sbjct: 842 RISAFDRISPHV 852

The following BLAST results are available for this feature:

BLAST of Spg010880 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28162.1	1.2e-16	68.06	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]
KAA0054152.1	1.6e-16	68.06	uncharacterized protein E6C27_scaffold131G00760 [Cucumis melo var. makuwa]	[more]
KAA0055957.1	1.6e-16	68.06	uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]	[more]
KAA0033244.1	2.1e-16	68.06	uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa] >TYK1...	[more]
TYK25790.1	2.8e-16	69.44	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg010880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DXC7	6.0e-17	68.06	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UMY2	7.8e-17	68.06	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UEC9	7.8e-17	68.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SPV8	1.0e-16	68.06	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00010 P...	[more]
A0A5D3DR73	1.3e-16	69.44	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg010880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010880.1	Spg010880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding