Spg010861 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010861
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold10: 6001232 .. 6002974 (-)
RNA-Seq Expression	Spg010861
Synteny	Spg010861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGATAACTTAGATGTTAAATTGTTCAATGAAGTATGCAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAAGAAGTTCTCCGTTCTCATAACTACAGAAGTTTCTTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCGTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAAAATGTAAAAACTCCTTATCGTAAGAGTCTAAACTGCATGATGCTCCTAGCCCACATGAGCTTAAAAGGTGAGTGCAAAAAAAATTGAACTACGTTATGACTTGATCCCTTTCTTCAAAAGGTACATAGGCAGCTTAAAGAGAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAAAAAAAAAATGAAAGTGCAACAAATATTGAAGCACGACAAAACAAATTGAAGAAACTCATCACTACTGGGGGCAACACAACAAATTGAAGTTGTGCACCGTAATGAATGTGAAGCTACGAGTTGGATGAATAAAAAAAAAACTTCATTCCTCCAAATTCAATGTCTCGCTAGCCTCAAGTTTGGTGTTCCAATCACCCTAAGTTTGTTGCTCCCTCTTCTCTCCAAGTTCGAGGGTTCTTATGATGTACGCAACTACGTTGTTCCCTCTTCTTCAAGTTCCCGAAGGTTCATACGGCGCTGCCTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTTTCATGCTACGCTAGGCTGCGCTATTGCACTACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCATTCTCCAAGTTCGAAAGTTCACATGCTGTGGTGTTGCCCGCTGCTTCATTCTCCCTCCAAGTTCGAAGGTTCTGACGTTGCACTACTTCCTTCACCAAGTTCGAAGGTTCTCACGTTTCGCTGCATCCTTCACCAAGTTCGAAGGTTCGCATGTTATTCGCTGCTTCGCTGCTGTTCCCTTTTCAAGTTTGAAGGTTCACTTGGCGTTGCTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGATTCTACTCTGCTTTCTTTTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTTTCCTTCTCCAAGTACGAAGGTTCTGCTTTGCTGAAAGACGTGGCAGCGGCAAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGAAAGACGTGGCAGTGGCAAAAGTCCAAGGAACATGTCCCTGCACTGATGCTGGAAGGCGTGGCGGCGACAAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCGACAAAAGTCGAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAGCAAAAGTCCAAAGAACATGTCCAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGTTGAAAGGCGTGGCGGTGGCAAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAACAAAAGTACAAGGAACATGTCCAAATAA

mRNA sequence

ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGATAACTTAGATGTTAAATTGTTCAATGAAGTATGCAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAAGAAGTTCTCCGTTCTCATAACTACAGAAGTTTCTTTGAAGTTCGAGGGTTCTTATGATGTACGCAACTACGTTGTTCCCTCTTCTTCAAGTTCCCGAAGGTTCATACGGCGCTGCCTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTTTCATGCTACGCTAGGCTGCGCTATTGCACTACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCATTCTCCAAGTTCGAAAGTTCACATGCTGTGGTGTTGCCCGCTGCTTCATTCTCCCTCCAAGTTCGAAGGTTCTGACGTTGCACTACTTCCTTCACCAAGTTCGAAGGTTCTCACGTTTCGCTGCATCCTTCACCAAGTTCGAAGGTTCGCATGTTATTCGCTGCTTCGCTGCTGTTCCCTTTTCAAGTTTGAAGGTTCACTTGGCGTTGCTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGATTCTACTCTGCTTTCTTTTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTTTCCTTCTCCAAGTACGAAGTGGCAAAAGTCCAAGGAACATGTCCCTGCACTGATGCTGGAAGGCGTGGCGGCGACAAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCGACAAAAGTCGAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAGCAAAAGTCCAAAGAACATGTCCAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGTTGAAAGGCGTGGCGGTGGCAAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAACAAAAGTACAAGGAACATGTCCAAATAA

Coding sequence (CDS)

ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGATAACTTAGATGTTAAATTGTTCAATGAAGTATGCAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAAGAAGTTCTCCGTTCTCATAACTACAGAAGTTTCTTTGAAGTTCGAGGGTTCTTATGATGTACGCAACTACGTTGTTCCCTCTTCTTCAAGTTCCCGAAGGTTCATACGGCGCTGCCTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTTTCATGCTACGCTAGGCTGCGCTATTGCACTACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCATTCTCCAAGTTCGAAAGTTCACATGCTGTGGTGTTGCCCGCTGCTTCATTCTCCCTCCAAGTTCGAAGGTTCTGACGTTGCACTACTTCCTTCACCAAGTTCGAAGGTTCTCACGTTTCGCTGCATCCTTCACCAAGTTCGAAGGTTCGCATGTTATTCGCTGCTTCGCTGCTGTTCCCTTTTCAAGTTTGAAGGTTCACTTGGCGTTGCTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGATTCTACTCTGCTTTCTTTTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTTTCCTTCTCCAAGTACGAAGTGGCAAAAGTCCAAGGAACATGTCCCTGCACTGATGCTGGAAGGCGTGGCGGCGACAAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCGACAAAAGTCGAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAGCAAAAGTCCAAAGAACATGTCCAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGTTGAAAGGCGTGGCGGTGGCAAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAACAAAAGTACAAGGAACATGTCCAAATAA

Protein sequence

MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKFEGSYDVRNYVVPSSSSSRRFIRRCLVVPSPSSKVLKLCCFLLQVRRFSCYARLRYCTTSFFKFEGSHIALLCCFILQVRKFTCCGVARCFILPPSSKVLTLHYFLHQVRRFSRFAASFTKFEGSHVIRCFAAVPFSSLKVHLALLRCSFSKFEGSDSTLLSFPRSKVLVLRCFAFPSPSTKWQKSKEHVPALMLEGVAATKVQGTCPCTHAGRRGGDKSRRNMSLHSCWKAWRQQKSKEHVQSPRNMSKVQGTCPCTHVERRGGGKSPRNMSKVQGTCPCTHAGRRGGNKSTRNMSK

Homology

[Close]

BLAST of Spg010861 vs. NCBI nr
Match: TYK30263.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 3.0e-18
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  
Sbjct: 91  LSMATKEEENQCPTSTYTRTSAFKRLSISTSKKDRPSTSAFDRPKMTNNQQQREIKSLKA 150

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL 95
           KLF+E   D K+ S +PSRMK+K SV I TE SL
Sbjct: 151 KLFHEENGDDKIHSRVPSRMKRKLSVDINTESSL 184

[Close]

BLAST of Spg010861 vs. NCBI nr
Match: KAA0065966.1 (hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-17
Identity = 66/130 (50.77%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  
Sbjct: 91  LSMATKEEENQCPTSTYTRTSAFKRLSISTSKKDRPSTSAFDRPKMTNNQQQREIKSLKA 150

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKFEGS---YDVRNYVVP--SSSSSRR 120
           KLF+E   D K+ S +PSRMK+K SV I TE   K  G+    +++++  P  S S S +
Sbjct: 151 KLFHEENGDDKIHSRVPSRMKRKLSVDINTE-KPKLHGAPSPQELKSFPPPNFSISLSPK 210

Query: 121 FIRRCLVVPS 126
            ++ C   PS
Sbjct: 211 VLQSCSRPPS 219

[Close]

BLAST of Spg010861 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-17
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL 95
           K F+E   D K+ S +PSRMK+K SV I TE SL
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg010861 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-17
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL 95
           K F+E   D K+ S +PSRMK+K SV I TE SL
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg010861 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-17
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC +ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +   
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL 95
           K F+E   D K+ S +PSRMK+K SV I TE SL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg010861 vs. ExPASy TrEMBL
Match: A0A5D3E2D7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00160 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-18
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  
Sbjct: 91  LSMATKEEENQCPTSTYTRTSAFKRLSISTSKKDRPSTSAFDRPKMTNNQQQREIKSLKA 150

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL 95
           KLF+E   D K+ S +PSRMK+K SV I TE SL
Sbjct: 151 KLFHEENGDDKIHSRVPSRMKRKLSVDINTESSL 184

[Close]

BLAST of Spg010861 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-18
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL 95
           K F+E   D K+ S +PSRMK+K SV I TE SL
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg010861 vs. ExPASy TrEMBL
Match: A0A5A7VHY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62G00430 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-18
Identity = 66/130 (50.77%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  
Sbjct: 91  LSMATKEEENQCPTSTYTRTSAFKRLSISTSKKDRPSTSAFDRPKMTNNQQQREIKSLKA 150

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKFEGS---YDVRNYVVP--SSSSSRR 120
           KLF+E   D K+ S +PSRMK+K SV I TE   K  G+    +++++  P  S S S +
Sbjct: 151 KLFHEENGDDKIHSRVPSRMKRKLSVDINTE-KPKLHGAPSPQELKSFPPPNFSISLSPK 210

Query: 121 FIRRCLVVPS 126
            ++ C   PS
Sbjct: 211 VLQSCSRPPS 219

[Close]

BLAST of Spg010861 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-18
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL 95
           K F+E   D K+ S +PSRMK+K SV I TE SL
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg010861 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-17
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1   MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDV 60
           +SMAT EEENQC +ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +   
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL 95
           K F+E   D K+ S +PSRMK+K SV I TE SL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

The following BLAST results are available for this feature:

BLAST of Spg010861 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30263.1	3.0e-18	62.77	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0065966.1	1.2e-17	50.77	hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]	[more]
KAA0044978.1	1.2e-17	61.70	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050734.1	1.2e-17	61.70	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol...	[more]
KAA0036008.1	2.6e-17	60.64	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg010861 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E2D7	1.5e-18	62.77	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BBF9	5.6e-18	61.70	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VHY3	5.6e-18	50.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TQ06	5.6e-18	61.70	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7SZJ7	1.2e-17	60.64	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg010861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..393

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010861.1	Spg010861.1	mRNA