Spg010860 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010860
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	General transcription factor IIH subunit 5-like
Location	scaffold10: 9385785 .. 9393331 (+)
RNA-Seq Expression	Spg010860
Synteny	Spg010860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGAAGAAAACACCGGTAAGTTAATGCTGCTGAATATGCTGATTCCTTATCTCGATCTAGGGCTTTTTTTTTTGGATCATCATATTTTCATTTTTCTAAATCCAATTTTACGTTTCGGTCGGTTTTGTAACCGTTTGAAAAAAAAAAATGGGCAACTTGCCCGGTCAAAGGGAGAAAAGGGGGAAAGTTCCCCAAAATTTCGGTCAAATCGCCGAAATTAAAAAAAAAAAAAAAAAAAAGAACGATATTTTTTTCCCCCCTCTTCAGTCTCTCTCCCTGACAGCAATCTTTTTCTTCATCTCAGCTCTCTTTCTCTCGCTGCACGCCGCCCGCCGAAGCCGCACACCGCCTCCCGCCGTCGATCTCCGCCGCACGCCGCACTCCGCCCGCCAACGTCGCACGCCGTTCGCCGCCGTGAGTTCTCTCTCTCGGCTGTAGCACGCGAGCTCCGCGCCTCCGCCGTCGTCCTTCGCTACGTAGCCGCCGGTGAGCACTCAGCCCCCCCTCTCTCTCGTCTATTTCTCCCTCAATCTCACTCTCTCTCAGCACCCCTTCTCTCTTCTGTAACAGATTTGCGCCGCCCCTCTGTCCACGCTCGTCTGCACGACCACCGCTGCAAGACGCTCGCCGTCGCTGCCGCTGTCTCTTTTCCCTGGTCACCATCACGAACCAAACCGCCGTGCACCAGAATCAGACCGCCGCCGCCTTAAGGAAACAGCCCCAGCACTGTGGTCGCCTTTCAGATCTGTTCTTTGCCATTCTGAACTGTTCATCGCCGCCGCCTGAAATTCCAGCTTAGATTTCTAAAGGACCGATTGGGTAAGGATGTGTTGGATATTTTTGTCCTAATATTCTCTGCCTTATGGATTACGCTGATTCCTTATCTCGAGCTTTTTTTTTTTTTTTTTTTGGGTCAATCATATTTTCATTTGTCTCAATCCAGTTCTACGTTTCAGTCGGTTTCGTGGATTAAATCTCACTTAGACTTGCTCCAAAATGAACATGTTTTTTTGTATAATTTCTCTAATCCCTACTGTGGATGATAAATTTGTTCTTCTGGGTCAACTGTCAACGATGCTCGACTCAGATTAAAATCTCTTGAGAACTCAATATTCTTGATTAATCACTTGGAAATTGGAATGTAGGGACCCTTTCAGTTAAATTTGTTCCGCTGCCGGTTGAGGGTGGACGTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGGTAAATGCCTTCTACATTACTTCAGAGATAGATATCTATATTTGATTATGGAATCTAGTTTGCTTCTGTTTGCTGTTTCATTCTTCTCTTTGGAATTGTTATGACATTTGAATGATAGATCTTTTAAGAGAATTGAAACTATTAAGGATACACGGCCTGTGGGCCAAGAAGAAAGGGAGAGAAAGGAATTGGGCCATCGCTTACAACCCAATCTCTTGAAGGATAAAATCTAGAACATTCCTTCAACGAATTGTTATCAGTAGTACAGCTCCAAGATTATTTTGTTATTGATTATTCAATGATATTTGTACATGTGTACTCTATATTCTTATTTTGATTGTTTTTCTATATTCTTTTGGGAATTTCCTTTTTCCCTAAGCTGTATAAATCTGTGCTCCCTGATCCTTGGTGAATAATTGAAAACGAGTATTATCTCCCCCAAATCTCTCCTTGCTTTCAACATTTTAATTTGGTATCAGAGCTTCGGAACTACAAATTTCAGTAGTCCTCCACTAAATCAACTGCTGAACCAAATCACCTCTATAAAGCTTGATAGAGGTAATTTTTTGTTGTGGAAAAACCTGGCATTACCAATTTTACGAAGCTACAAACTGGAAGGGCATTTGTCTGGTTTGAAGCCCTGTCCTCTGAAATTTATTCAAGTTGCGACTAGCTCGTCTCCCTCATCATCGATCGGAGAATGAGCCACTAATGAAACGACTGCAACAAGGTAGTCAACTCCCAATCCAGAATATGAGTCATGAATTGCCATTGATCAACTTCTCTTGGGTTGGCTTTACAACTCTATGTCTCCCGAAGTAGCCACCCAAGTAATGGGATTTGAGAATGCTCAAGATCTGTGGGCAGCGGTACAAAAGCTGTTCGGTGTTCAATCTCGAGCAGAGGAAGACTACTTATGCCAGGTATTTCAGCATTCAAGAAAGATAATTTAAAAATGGCTGGCTATCTTCGTGTTATGAAAAATCACGCTGACAACTTAGGGCAGGCTGGGAGTCTGATTACCAATCGGTCTCTAGTGTCTCAAGTTCTTTTAGGGTTAGAAGAGTACAACCCCGTTGTGGCGATGATTCAAGGCAGAATAGGCGTGACTTGGTCTGAGCTACAAACTGAACTTCTCGCGTTTGAGAAGAGACTTGAATTGCAGAACAATGTAAAGAGCTTGTTGACACTCAGTGCCACCACCTCAGTGAACATGGCTAGCTCTAAAGATGCTGGTACACAGAGGAATCAAAACTCATCTACCAATGGAAGGTCAAACAATTTTGGCCGTGGAAATCAGCGAGGAGGAGGACAGCGTGGCAGAGGTTGAGCTCGGGGTTATGGTTTCTCAAACTTTAACTCGAACAAGCTAGTATGCCAAGTGTGTGGGAAGATAGGGCATACAACATTGATGTGCTATCAACGATTCAACAAGGAATTTTCAGGTCCTGTTCCAACTCAAAACAGAGGGGATTCTACTCGACAGAACTACAATGGTTATTCAAATCAGCCGGCTGACTTTGTAGCCAATCAGAACTCAAATCCGTTTGTTGCTTCCCCGGAGACAGTACTTGATCCCAGTTGGTATGCAGCAGTGGGGCAACCAGCCATGTTACTGCTGATCACAATGTTCTAGCCAATCCTATGGAGTATGAAGGTATGGAACATGTTACGATTGGTGATGGTAACAAATTAGACATTAAATACACTGGTAATTCCTGTCTAACCGATGGAACTAGGAAATTTAGCCTGGAGAATGTTATGTGTGTTCCAAGTATTGCTAAAAATCTCATCAGTGTCTCCAAACTTGCTCATGATAATAATATTTTCGTTGAATTTCATGATGATTTCTGTGTTGTTAAGGACAAGGCTATGGGCAAGGAACTGCTGAAAGGACTGCTTAAAGATGGTCTTTATCGGTTTGAAGGAGTTAAGGCAGCAGCAGAAGATGTGTCCTGTCCAAAATATCATGGAAAAATCTGTCATGATATTAGTAAAAGTACTGATGTGTCTGGTGAACGGTCCACTGCGTTAGTAATGTCTAAAAATGTTAGTGTTGCTGTGTCTAAAACCATTTTGCATGGACGGTTTGGACACCCCTCGGCTAGAGTCCTTGAATCTATAATTCAGAAATGTAATTTGCATACTAAAGTTAATGACAAAGTTCAATTTTGTGAAGCATGCCAATTTGGTAAATCTCATGCATTACCGTTTGAAAATTCTCTGTCTCATGCCTCGTTAAAGTTTGATTTGATCCATACTGACTTATGGGGACCTGCACCGGTTAGCTCTGTTGGTGGATTCAGATTTCATGTACTGTTTTTAGACGATTTCAGTAGATTTATGTGGATATATCCCTTAAAGCATAAAAATGATACTGTGACAGCATTCACTCATTTCATTGCGATGGTGAAAAATCAGTTTGGAACCACTGTTAAGGCATTACAATTCGATAATGGGGGAGAGTACAAAGCAATCCACCGTATGTGTGATCAAATGGGGATTAAAATCCGTCTCTCATGCCCTCACACGTCTCAACAGAATGGTCGGGCTGAGAGAAAACATCGTCATGTAGTGGAAACCGGGTTGACTTTACTTGCTCAAGCCTCGATGCCCTCAAGGTATTGGTGGGACTTGTTTTTGATGGTCGTCTTACTGAAAAACAGTTTACCTTTGCAGGTACTTAATGGCAAGTCACCGATGGAGTTGATGTTTAACAAATGTGCTGATTTTCAAGCTCTTAGAACGTTCGGTTGCGCATGTTATCCATGTCTCCGCCCGTACCAAGCGCATAAATTCCAGTTTCACACTGAAAAGTGTGTCTACATGGAGTTGAGTCCAGCTCACAAAGGCCATAAATGTATCAACAGCGGTGGAAGGATGTTCATTTCTTGCCATGTAAGGTTCAACGAAGAGGAGTTTCCTTTTAAATTGGGGTTTCAGTCTTCCCCTTCTCTGCCTCCTGAATCTGCTGCCTCCCCTCAAATCCTTCGGTGGTTTTCTCATCTACCAGTGGCCTATGTGCCACAGTCTAACTTGAGTTCAGAAAATCAGCAAGTTCCTGCCTCGAGGTTGCCTACTTCTCCTATTGAGCCTACTTCTCCTGCTACTCCACATCTTTCAGTGCCCAGCTGTGATGCTCTTGCACCTATGACTATGCCCAGTCCACGAGTGTCGTCAGCATCTCCTCAACCTGTTGAACGGCAAACAACAGTGTTGCCTCCAACAATGTCACACCAACCAACATCGTCCTCAACTGATTCACTATCTGGTACAACAACTTTTGAGGTTCAACCAAGCCACACTCGATGGTAACACGAGGGAAAGCAGGTATATTCAAACCTAAATTGTGGCTATCTCACACCAGGACTGATTGATCTGTAACTGAACCTACAAGAGTAAAAGAAGCTCTTGAAACTCCATAGTGGCGAAGTGTTATGGATGCAGAATACTTAGCATTATTAAAGAACAACACTTGGCAGCTTGTACCTCCGTCTTCTTCCTATAATGTTATGGGCAACAAGTGGATCTTCCGCATTAAAAGGAATCCAAATGGGACCATCCAAAGGTACAAGGCTCTCTTGGTTGCAAAGGGGTTCCATCAAAGCTCGGGAATTGACTTTTTTGAGACATTTCGCCCGGTCGTTAAAGCTTCTACTATCCGTGTGATCTTGAGTGTAGCAGTAACTAAAGGTTGGAGGCTAAGGCAACTGGATTTCAATAATGCTTTCCTAAATGGGAAGCTTGATGAGGTCGTGTATATGACTCAACCACCGGGATATATTGATAATCGTTTTCCTGAATATGTTTGCAAGCTCAACAAGGCGATCTATGGTCTCAAACAAGCACCGAGAGCGTGGAATAATACCTTGAAAGATAACTTATTGTCATTGGGATTTCTCAATTCCAGGTCTGATCCCTCTCTCTTTATTTTTCGGTCTGCTCGTGATATTTTGCTGCTGTTGGTATATGTGGATGATGTCATAGTTACTGGGAATAATGAGAAATTAATCAACCGACTAGTTGCCAACTTGGATAAATGTTTTGCCTTCAAAGACCTGGGAACACTTCACTATTTCTTGGGGATTCAAGTACACTATCTACCTGATGGCTTACTCCTTAATCATAAGAAGTATGTGGATGATCTGTTACTTAAGCTAGATTTGTGTGATTTAAAACCTGCCCCTTCACCCACTGTATCAAGCCATGAACTATCTCTTCATTCGGGGAACCCATTAGATAATCCCTCTTTGTATCGAAGTGTAATCGGTGCTTTGCAATACTTAACACATACACGACCTGATATTGCGTATGCTGTTAACCATCTTAGTCAATTTCTGAAAGCTCCTTCTGATTGTCACTGGCAAGCTGTTAAACGTGTGCTACGGTATGTTAGTGGAACCAAGCACTTTGGCTTATATGTTCAACGAGGTGATAATTTATCTGTTTCAGCATACTCGGATGTTGATTAGGCATCAAATCTGGACGATAGAAAATCGGTGGCTGCCTATTGTGTGTTTGTAGGGAATAACATTGTCTCTTGGGCCTCAAAGAAGCAGAATGCTGTTGCAAGATCCTCCACTGAAATCGTTTGGCTGCAGCAATTACTTGATGAAATTGGTTTTAGATGCTCCACTAAACCAGTCCTATGGTGTGACAATGTCAGTGCAGGGGCTCTAGCTTCAAATCTCGTATTTCATGCCCGTACAAAACACATCGAAATTGATGTGCATTTCGTTCGAGATTTGGTTGTCAAAGGCAAACTCAGTGTCTGCTACATTCCATCGTCTGACCAGCCAGTCGACTGTCTTACAAAGGCGTTATCTCACTCACAGTTCTCATTTTTACGGTCCAAACTCGGTGTAGCAAAGCTACCCGCTCGTTTGAGGGGGAATATTAAGGATACACGGCCTGTGGGCCAAGAAGAAAGGGAGAGAAAGGAATTGGGCCATCGCTTACAGCCCAATCTCTTGAAGGATAAAATCCAGAACATTCCTTCAACGAATTGTTATCAGTAGTACAGCTCCAAGATTATTCCGTTATTGATTATTCAATGATATTTGTACATGTGTCCTCTATATTCTTATTCTGATTGTTTTTCTATATTCTTTTGGGAATTTCCTTTTTCCCTAAGTTGTATAAATCTCTGCTCCCTGATCCTTGGTGAATAATTGAAAACGAGTATTATCTCTCCCAAATCTCTCCTTGCTTTCAGCATTTTAATTGAAAATTGAGTTTGTTTTCTCACAATTTCTTTAAAATGGTTCATTTTTCTTAAGGAAACATATGAATTCTTAGCCAAATTTCAAAAACAAAAATAAGTTTTTTTTTTAGTTTTCAAAACTTGGCTTGTATTTTGAAAATATTTGTAAAAGGTAGATAACAAATCAAAGAAACTAGGGGTGGAAGAGAATGTTGGCTTAATTTTCAAAAGTCAAAAACAAAAAACTAAATGGTTATTAAATGGGACCTTAGTGATCGAACGTTGTTTATACATCAGTGTTTATGTCGAAAGCTGATATGCATATGATGTTACCTTTCTTTCCCATCTTGAATTGGGATTGTTTGATGCAACTTTATCCTAGTTTTGCTGAGGGAGGTTGGGTTGATCAAGATGTGGAATTTCTTACTTTTCAATATGAATAGATTCTAGGCATTTTTCCCTGTTCTCAAGAGAAATTATTTTCTTCCTTTGTGCAGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCGTTGCCTTCATCCCAAAGATTTATCATCCATATTTTGGATAATACCCACATGTTTGTACAACCCCATGTAGCTGAGATGATTCGAAATGCCATTTCAGAATTTCGAGATCAGAATTCTTATGAGAAACCTACTTGAAACATCCCCTCCCACCTCTACTGTGTTGGTAATCAGGGGTTTACTGTATAATTGTATTTTTAGGGTTTTTGAAGTTATAGATTTTGCTTCTAAAACTTCTATTTCATCCCAACAGTTTTACTTGTATTGGTGTCTCTTTGCTATGCAACGTATCTCAACTGATTTGAAGTTCTTAGAATGGTGGAGACTATGAGCTGCAAGTGGTTCTTAGCTTGAAAAGGGATGATTTTTGTTTTTTAATATCTGCGAGTGGTCAGGTGAGTTTGCGTACACTACACTTCGACTGATCTTACAGAACAATCATTGGACTTCCTACATTTATTTGCCAAGAAAATTTGTAAATTATTAACCTGTAGTGATTGAAAATGGTTGGAATTTGAGACGCAAGGGAATTGAGAGAGGGAAGTTTTTTCTAAAAAGTATTTGG

mRNA sequence

ATGTGGAGAAGAAAACACCGCTCTCTTTCTCTCGCTGCACGCCGCCCGCCGAAGCCGCACACCGCCTCCCGCCGTCGATCTCCGCCGCACGCCGCACTCCGCCCGCCAACGTCGCACGCCGTTCGCCGCCGTGAGTTCTCTCTCTCGGCTGTAGCACGCGAGCTCCGCGCCTCCGCCGTCGTCCTTCGCTACGTAGCCGCCGGTGAGCACTCAGCCCCCCCTCTCTCTCGTCTATTTCTCCCTCAATCTCACTCTCTCTCAGCACCCCTTCTCTCTTCTGTAACAGATTTGCGCCGCCCCTCTGTCCACGCTCGTCTGCACGACCACCGCTGCAAGACGCTCGCCGTCGCTGCCGCTGGACCCTTTCAGTTAAATTTGTTCCGCTGCCGGTTGAGGGTGGACGTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCGTTGCCTTCATCCCAAAGATTTATCATCCATATTTTGGATAATACCCACATGTTTGTACAACCCCATGTAGCTGAGATGATTCGAAATGCCATTTCAGAATTTCGAGATCAGAATTCTTATGAGAAACCTACTTGA

Coding sequence (CDS)

ATGTGGAGAAGAAAACACCGCTCTCTTTCTCTCGCTGCACGCCGCCCGCCGAAGCCGCACACCGCCTCCCGCCGTCGATCTCCGCCGCACGCCGCACTCCGCCCGCCAACGTCGCACGCCGTTCGCCGCCGTGAGTTCTCTCTCTCGGCTGTAGCACGCGAGCTCCGCGCCTCCGCCGTCGTCCTTCGCTACGTAGCCGCCGGTGAGCACTCAGCCCCCCCTCTCTCTCGTCTATTTCTCCCTCAATCTCACTCTCTCTCAGCACCCCTTCTCTCTTCTGTAACAGATTTGCGCCGCCCCTCTGTCCACGCTCGTCTGCACGACCACCGCTGCAAGACGCTCGCCGTCGCTGCCGCTGGACCCTTTCAGTTAAATTTGTTCCGCTGCCGGTTGAGGGTGGACGTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCGTTGCCTTCATCCCAAAGATTTATCATCCATATTTTGGATAATACCCACATGTTTGTACAACCCCATGTAGCTGAGATGATTCGAAATGCCATTTCAGAATTTCGAGATCAGAATTCTTATGAGAAACCTACTTGA

Protein sequence

MWRRKHRSLSLAARRPPKPHTASRRRSPPHAALRPPTSHAVRRREFSLSAVARELRASAVVLRYVAAGEHSAPPLSRLFLPQSHSLSAPLLSSVTDLRRPSVHARLHDHRCKTLAVAAAGPFQLNLFRCRLRVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

Homology

[Close]

BLAST of Spg010860 vs. NCBI nr
Match: KAG6596831.1 (General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-29
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 127 FRCRL---RVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFV 186
           FRC L       FDIMVNAIKGLFISCDIPM QFIINYNASLP+S RFIIHILDNTHMFV
Sbjct: 170 FRCLLLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFV 229

Query: 187 QPHVAEMIRNAISEFRDQNSYEKPT 209
           QP+VA+MIRNA+SEFRDQNSYEKPT
Sbjct: 230 QPNVADMIRNAMSEFRDQNSYEKPT 254

[Close]

BLAST of Spg010860 vs. NCBI nr
Match: KAG7028360.1 (RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-29
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 127 FRCRL---RVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFV 186
           FRC L       FDIMVNAIKGLFISCDIPM QFIINYNASLP+S RFIIHILDNTHMFV
Sbjct: 185 FRCLLLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFV 244

Query: 187 QPHVAEMIRNAISEFRDQNSYEKPT 209
           QP+VA+MIRNA+SEFRDQNSYEKPT
Sbjct: 245 QPNVADMIRNAMSEFRDQNSYEKPT 269

[Close]

BLAST of Spg010860 vs. NCBI nr
Match: XP_038876808.1 (general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida] >XP_038876809.1 general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-28
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKGLFISCD+PMAQFIINYNASLP+S RFIIHILDNTHMFVQPHVA+MIRNAISEF
Sbjct: 1   MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 199 RDQNSYEKPT 209
           RDQ SYEKPT
Sbjct: 61  RDQISYEKPT 70

[Close]

BLAST of Spg010860 vs. NCBI nr
Match: XP_008448918.1 (PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo] >XP_008448919.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 6.5e-28
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKG+FISCD+PMAQFIINYNASLP+S RFIIHILDNTHMFVQPHVA+MIRNAISEF
Sbjct: 1   MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 199 RDQNSYEKPT 209
           RDQ SYEKPT
Sbjct: 61  RDQISYEKPT 70

[Close]

BLAST of Spg010860 vs. NCBI nr
Match: XP_022152732.1 (RNA polymerase II transcription factor B subunit 5 [Momordica charantia] >XP_022152733.1 RNA polymerase II transcription factor B subunit 5 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 6.5e-28
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKGLFISCD+PMAQFIINYNASLP+SQRFIIHILDNTHMFVQP VA MI+NAISEF
Sbjct: 1   MVNAIKGLFISCDVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEF 60

Query: 199 RDQNSYEKPT 209
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Spg010860 vs. ExPASy Swiss-Prot
Match: Q6NNM0 (General transcription and DNA repair factor IIH subunit TFB5 OS=Arabidopsis thaliana OX=3702 GN=TFB5 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.8e-27
Identity = 54/70 (77.14%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKG+F+SCDIPM QFI+N N S+P SQ+FIIH+LD+TH+FVQPHV +MIR+AIS+F
Sbjct: 1   MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 199 RDQNSYEKPT 209
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Spg010860 vs. ExPASy Swiss-Prot
Match: Q5ZKH0 (General transcription factor IIH subunit 5 OS=Gallus gallus OX=9031 GN=GTF2H5 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-07
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVN +KG+ I CD  M QF++  + S    ++FII  LD TH+FV   +   ++  + E 
Sbjct: 1   MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGEL 60

Query: 199 RDQNSY 205
            DQNS+
Sbjct: 61  MDQNSF 66

[Close]

BLAST of Spg010860 vs. ExPASy Swiss-Prot
Match: Q2T9Z5 (General transcription factor IIH subunit 5 OS=Bos taurus OX=9913 GN=GTF2H5 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-07
Identity = 24/66 (36.36%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVN +KG+ I CD  M QF++  + S    ++FII  +D+TH+FV   +  +++  + E 
Sbjct: 1   MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 199 RDQNSY 205
            DQN++
Sbjct: 61  MDQNAF 66

[Close]

BLAST of Spg010860 vs. ExPASy Swiss-Prot
Match: Q6ZYL4 (General transcription factor IIH subunit 5 OS=Homo sapiens OX=9606 GN=GTF2H5 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-07
Identity = 24/66 (36.36%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVN +KG+ I CD  M QF++  + S    ++FII  +D+TH+FV   +  +++  + E 
Sbjct: 1   MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 199 RDQNSY 205
            DQN++
Sbjct: 61  MDQNAF 66

[Close]

BLAST of Spg010860 vs. ExPASy Swiss-Prot
Match: Q8K2X8 (General transcription factor IIH subunit 5 OS=Mus musculus OX=10090 GN=Gtf2h5 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06
Identity = 23/66 (34.85%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVN +KG+ I CD  M QF++  + +    ++FII  +D+TH+FV   +  +++  + E 
Sbjct: 1   MVNVLKGVLIECDPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 199 RDQNSY 205
            DQN++
Sbjct: 61  MDQNAF 66

[Close]

BLAST of Spg010860 vs. ExPASy TrEMBL
Match: A0A1S3BK87 (RNA polymerase II transcription factor B subunit 5 OS=Cucumis melo OX=3656 GN=LOC103490941 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-28
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKG+FISCD+PMAQFIINYNASLP+S RFIIHILDNTHMFVQPHVA+MIRNAISEF
Sbjct: 1   MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 199 RDQNSYEKPT 209
           RDQ SYEKPT
Sbjct: 61  RDQISYEKPT 70

[Close]

BLAST of Spg010860 vs. ExPASy TrEMBL
Match: A0A6J1DFN4 (RNA polymerase II transcription factor B subunit 5 OS=Momordica charantia OX=3673 GN=LOC111020387 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-28
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKGLFISCD+PMAQFIINYNASLP+SQRFIIHILDNTHMFVQP VA MI+NAISEF
Sbjct: 1   MVNAIKGLFISCDVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEF 60

Query: 199 RDQNSYEKPT 209
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Spg010860 vs. ExPASy TrEMBL
Match: A0A6J1L2N1 (RNA polymerase II transcription factor B subunit 5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498544 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.4e-28
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKGLFISCDIPM QFIINYNASLP+S RFIIHILDNTHMFVQP+VA+MIRNA+SEF
Sbjct: 1   MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEF 60

Query: 199 RDQNSYEKPT 209
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Spg010860 vs. ExPASy TrEMBL
Match: A0A6J1FX17 (RNA polymerase II transcription factor B subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111448261 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.4e-28
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKGLFISCDIPM QFIINYNASLP+S RFIIHILDNTHMFVQP+VA+MIRNA+SEF
Sbjct: 1   MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEF 60

Query: 199 RDQNSYEKPT 209
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Spg010860 vs. ExPASy TrEMBL
Match: A0A0A0L4F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036500 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.0e-28
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKG+FISCDIPMAQFIINYNASLP+S RFIIHILDNTHMFVQPHVA+MIRNAISEF
Sbjct: 1   MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 199 RDQNSYEKPT 209
           R+Q SYEKPT
Sbjct: 61  REQISYEKPT 70

[Close]

BLAST of Spg010860 vs. TAIR 10
Match: AT1G12400.1 (Nucleotide excision repair, TFIIH, subunit TTDA )

HSP 1 Score: 121.7 bits (304), Expect = 6.9e-28
Identity = 54/70 (77.14%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEF 198
           MVNAIKG+F+SCDIPM QFI+N N S+P SQ+FIIH+LD+TH+FVQPHV +MIR+AIS+F
Sbjct: 1   MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 199 RDQNSYEKPT 209
           RDQNSYEKPT
Sbjct: 61  RDQNSYEKPT 70

[Close]

BLAST of Spg010860 vs. TAIR 10
Match: AT1G62886.1 (Nucleotide excision repair, TFIIH, subunit TTDA )

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-19
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 139 MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHI--LDNTHMFVQPHVAEMIRNAIS 198
           MVN+IKG+FISCD+PMAQFI + N SLP+SQ+FII +  LD T MFV+P+  EMIR+A+ 
Sbjct: 1   MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVI 60

Query: 199 EFRDQNSYEK 207
           +FRD+NSY K
Sbjct: 61  KFRDENSYAK 70

The following BLAST results are available for this feature:

BLAST of Spg010860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596831.1	1.5e-29	83.53	General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita...	[more]
KAG7028360.1	1.5e-29	83.53	RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrospe...	[more]
XP_038876808.1	3.8e-28	92.86	general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida]...	[more]
XP_008448918.1	6.5e-28	91.43	PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo] >XP...	[more]
XP_022152732.1	6.5e-28	92.86	RNA polymerase II transcription factor B subunit 5 [Momordica charantia] >XP_022...	[more]

BLAST of Spg010860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNM0	9.8e-27	77.14	General transcription and DNA repair factor IIH subunit TFB5 OS=Arabidopsis thal...	[more]
Q5ZKH0	3.0e-07	39.39	General transcription factor IIH subunit 5 OS=Gallus gallus OX=9031 GN=GTF2H5 PE...	[more]
Q2T9Z5	8.6e-07	36.36	General transcription factor IIH subunit 5 OS=Bos taurus OX=9913 GN=GTF2H5 PE=3 ...	[more]
Q6ZYL4	8.6e-07	36.36	General transcription factor IIH subunit 5 OS=Homo sapiens OX=9606 GN=GTF2H5 PE=...	[more]
Q8K2X8	1.9e-06	34.85	General transcription factor IIH subunit 5 OS=Mus musculus OX=10090 GN=Gtf2h5 PE...	[more]

BLAST of Spg010860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK87	3.1e-28	91.43	RNA polymerase II transcription factor B subunit 5 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1DFN4	3.1e-28	92.86	RNA polymerase II transcription factor B subunit 5 OS=Momordica charantia OX=367...	[more]
A0A6J1L2N1	5.4e-28	91.43	RNA polymerase II transcription factor B subunit 5 isoform X1 OS=Cucurbita maxim...	[more]
A0A6J1FX17	5.4e-28	91.43	RNA polymerase II transcription factor B subunit 5 OS=Cucurbita moschata OX=3662...	[more]
A0A0A0L4F5	7.0e-28	91.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036500 PE=3 SV=1	[more]

BLAST of Spg010860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12400.1	6.9e-28	77.14	Nucleotide excision repair, TFIIH, subunit TTDA	[more]
AT1G62886.1	2.0e-19	64.29	Nucleotide excision repair, TFIIH, subunit TTDA	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009400	TFIIH subunit TTDA/Tfb5	SMART	SM01395	Tbf5_2	coord: 139..206 e-value: 1.5E-32 score: 124.1
IPR009400	TFIIH subunit TTDA/Tfb5	PFAM	PF06331	Tfb5	coord: 139..206 e-value: 5.3E-26 score: 90.4
IPR009400	TFIIH subunit TTDA/Tfb5	PANTHER	PTHR28580	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	coord: 139..208
IPR035935	TFB5-like superfamily	GENE3D	3.30.70.1220		coord: 139..206 e-value: 9.0E-25 score: 88.4
IPR035935	TFB5-like superfamily	SUPERFAMILY	142897	TFB5-like	coord: 144..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR28580:SF1	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	coord: 139..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010860.1	Spg010860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006294	nucleotide-excision repair, preincision complex assembly
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006289	nucleotide-excision repair
cellular_component	GO:0005669	transcription factor TFIID complex
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex