Spg010838 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010838
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein MNN4-like
Location	scaffold10: 6537982 .. 6539364 (-)
RNA-Seq Expression	Spg010838
Synteny	Spg010838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGGCGGGATCCCTTTGTTCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAGGAGTGAATTCCTTCTTGCACGACTATGTCCCCAACTATCTACTCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGTCGGCGATACTGAGCCACTCTCACCTATGCAGATCTAAGGATAAGTCCGAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCATATGAAATAGTCAGTCTCATCAGTAAACGGTGTTATAAAGCGAGAGCGACTTATTTCTCGGTCCTGGTCTTATGCAAACTCATTGCATAGGACGCCCCCACTCACATGTCTCTACATGGACGATTTAGGATCACATCGTCTATATCATCTATAAAGTGGGTCGCGTCTCATAGTGTCTCCAGAATAAGGTACCCAACCCTATCCCTATACTATAGACCGTTTTGGCTATTACTCAAGCTTGATCCACTTTTATGTCTCTACATAAAGCTCAAGTGTTCATCCTATAGCCATGGATCTTAGTTTATTGGATTTGGGTTATTATATGTGCAATTTACTTTATTCAGTAATAACTTTACTGAATTAATCTCGATAACGCCTTTATCGAATAAGTATATAATTCGTTTAACATTCACTATCTACGAGTTTTAGGACACCAATCCCAACAGTTGAATGTGGCTGTTCGAGAGGTGGGGATTGACGGGGCACAGTGGCGACTCCCAAAGACTGAGAAGAGGACCTTTCAGGCTGCCTATCTGAAGAGCGAGGCCAACACTTGGTTGGGTTTCGTTAAGCAACGCCTGCTTCCTACGACTCATGACTCCACAGTTTCCCGTGATCGAGTTCTACTAGCTTTTGCTATTCCAGAACTCTCAGTATCGACGTTAGCAAGATAATCTCTAGTGAAATTCATAGTTGCTGGAGGAAGGTGGGAAAATTATTTTTCCCTAACACGATCACTATGCTATGCCAAAGGGCAAGGGTTCCAACAAGCAATGAGGATATAATTTTTATGTTCAAATGGATTATGGACACACCGAACTTGGTAAGGCTACAGAGGACGCAGGAGGCATGTCAAGGTGGGCTAGTGTGTGGCATCCACAATATTCAAGAACAACTTCAACTTCAGTCCAGTCGCATGGAATTTGCTGAGAGGCAATTTCAAACGTACTGGAATTATGTTAAGAGAAGGGATGCCACCATTAAGAAGGCTTTGCAATCAAATTTCTCTAAACCGTATCAAGCCTTCCCTGTTTTCCCTGATGATCTTTTGAACCCTTGGATCCAACCCCCGCCAGTTGAGAGAGAAGAAGATGAAGAGGATGCTGGTCAGGAAGATTAA

mRNA sequence

ATGAGAGGGCGGGATCCCTTTGTTCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAGGAGTGAATTCCTTCTTGCACGACTATGTCCCCAACTATCTACTCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGACACCAATCCCAACAGTTGAATGTGGCTGTTCGAGAGGTGGGGATTGACGGGGCACAGTGGCGACTCCCAAAGACTGAGAAGAGGACCTTTCAGGCTGCCTATCTGAAGAGCGAGGCCAACACTTGGTTGGGTTTCGTTAAGCAACGCCTGCTTCCTACGACTCATGACTCCACAGTTTCCCGTGATCGAGTTCTACTAGCTTTTGCTATTCCAGAACTCTCAGTATCGACGGCAAGGGTTCCAACAAGCAATGAGGATATAATTTTTATGTTCAAATGGATTATGGACACACCGAACTTGGTAAGGCTACAGAGGACGCAGGAGGCATGTCAAGGTGGGCTAGTGTGTGGCATCCACAATATTCAAGAACAACTTCAACTTCAGTCCAGTCGCATGGAATTTGCTGAGAGGCAATTTCAAACGTACTGGAATTATGTTAAGAGAAGGGATGCCACCATTAAGAAGGCTTTGCAATCAAATTTCTCTAAACCGTATCAAGCCTTCCCTGTTTTCCCTGATGATCTTTTGAACCCTTGGATCCAACCCCCGCCAGTTGAGAGAGAAGAAGATGAAGAGGATGCTGGTCAGGAAGATTAA

Coding sequence (CDS)

ATGAGAGGGCGGGATCCCTTTGTTCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAGGAGTGAATTCCTTCTTGCACGACTATGTCCCCAACTATCTACTCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGACACCAATCCCAACAGTTGAATGTGGCTGTTCGAGAGGTGGGGATTGACGGGGCACAGTGGCGACTCCCAAAGACTGAGAAGAGGACCTTTCAGGCTGCCTATCTGAAGAGCGAGGCCAACACTTGGTTGGGTTTCGTTAAGCAACGCCTGCTTCCTACGACTCATGACTCCACAGTTTCCCGTGATCGAGTTCTACTAGCTTTTGCTATTCCAGAACTCTCAGTATCGACGGCAAGGGTTCCAACAAGCAATGAGGATATAATTTTTATGTTCAAATGGATTATGGACACACCGAACTTGGTAAGGCTACAGAGGACGCAGGAGGCATGTCAAGGTGGGCTAGTGTGTGGCATCCACAATATTCAAGAACAACTTCAACTTCAGTCCAGTCGCATGGAATTTGCTGAGAGGCAATTTCAAACGTACTGGAATTATGTTAAGAGAAGGGATGCCACCATTAAGAAGGCTTTGCAATCAAATTTCTCTAAACCGTATCAAGCCTTCCCTGTTTTCCCTGATGATCTTTTGAACCCTTGGATCCAACCCCCGCCAGTTGAGAGAGAAGAAGATGAAGAGGATGCTGGTCAGGAAGATTAA

Protein sequence

MRGRDPFVQAPESALKGTTSLLSLIRVGVNSFLHDYVPNYLLVPIPEMGGLLRHQSQQLNVAVREVGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQRLLPTTHDSTVSRDRVLLAFAIPELSVSTARVPTSNEDIIFMFKWIMDTPNLVRLQRTQEACQGGLVCGIHNIQEQLQLQSSRMEFAERQFQTYWNYVKRRDATIKKALQSNFSKPYQAFPVFPDDLLNPWIQPPPVEREEDEEDAGQED

Homology

[Close]

BLAST of Spg010838 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-10
Identity = 68/265 (25.66%), Postives = 104/265 (39.25%), Query Frame = 0


Query: 44  PIPEMGGLLRHQSQQLNVAVRE-VGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQR 103
           P+ E    +++ +QQ  + V E V   GA+W +      T   + L   A  W  F+K R
Sbjct: 125 PVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSR 184

Query: 104 LLPTTHDSTVSRDRVLL-----------------------------AFAIPELSV---ST 163
           LLPTTH  TVS+DR+LL                             A   P L       
Sbjct: 185 LLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRN 244

Query: 164 ARVP----------TSNEDIIFMFKWIMDTPNLVRLQ--------RTQEACQGGLVCGIH 223
           AR P          T   D I + +   + P     Q         +     G ++  + 
Sbjct: 245 ARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLK 304

Query: 224 NIQEQLQLQS-------SRMEFAERQFQTYWNYVKRRDATIKKALQSNFSKPYQAFPVFP 251
            ++++L  Q        S ++   +Q Q +W Y K RD  +KKALQ+NF++P   FP FP
Sbjct: 305 ALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFP 364

[Close]

BLAST of Spg010838 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-09
Identity = 60/252 (23.81%), Postives = 99/252 (39.29%), Query Frame = 0


Query: 44  PIPEMGGLLRHQSQ-QLNVAVREVGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQR 103
           P+ E    + + ++ +L   +  V   GA+W +      T   + L   A  W  F+K R
Sbjct: 55  PVDEHSEFIENITEPELITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSR 114

Query: 104 LLPTTHDSTVSRDRVLL--------AFAIPELSVSTARVPTSNEDIIFMFKWIM-----D 163
           LLPTTH   VS+DR+LL        +  +  +  S  R   + +     F  ++     +
Sbjct: 115 LLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRN 174

Query: 164 TPNLVRLQRTQEACQGGLVCGIHNIQE-------------------------------QL 223
            P LV  ++     +   +      QE                                L
Sbjct: 175 APFLVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKAL 234

Query: 224 QLQSSRMEFAERQFQTYWNYVKRRDATIKKALQSNFSKPYQAFPVFPDDLLNPWIQPPPV 251
           + + S+ E   +Q Q +W Y K RD  +KKALQ+NF++P   FP FP ++L         
Sbjct: 235 EQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEILQDLDYEYEA 294

[Close]

BLAST of Spg010838 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-05
Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 40  YLLVPIPEMGG---LLRHQSQQLNVAVREVGIDGAQWRLPKTEKRTFQAAYLKSEANTWL 99
           Y +  IP+  G   +   Q +++  A+R +   G QW +     +T  ++ L  EA  W+
Sbjct: 249 YKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWV 308

Query: 100 GFVKQRLLPTTHDSTVSRDRVLLAFAI 124
             VK+R++PT+HD TVSRDRV+ A+ I
Sbjct: 309 YLVKRRIIPTSHDKTVSRDRVMAAYCI 335

[Close]

BLAST of Spg010838 vs. NCBI nr
Match: EOY13933.1 (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-05
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 57  QQLNVAVREVGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQRLLPTTHDSTVSRDR 116
           Q  N  +  + I+GAQW+    E  +F+ + +K E   WL FV  RLLP+TH S V++DR
Sbjct: 128 QDCNEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDR 187

Query: 117 VLLAFAI 124
            +L +AI
Sbjct: 188 AVLIYAI 194

[Close]

BLAST of Spg010838 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-05
Identity = 52/204 (25.49%), Postives = 88/204 (43.14%), Query Frame = 0


Query: 64  REVGIDGAQWRLPKTEK-RTFQAAYLKSEANTWLGFVKQRLLPTTHDSTVSRDRVLLAFA 123
           RE+G  G +W        RT++A+ LK  AN W+ F++  L PTTHDS++S ++++L + 
Sbjct: 308 RELGKAGIRWDAHSNYMLRTYRASNLKPNANVWINFIRYSLNPTTHDSSISVEKIILLYC 367

Query: 124 I-----------------------------PEL---SVSTARVPTSNEDIIFM---FKWI 183
           +                             P L    +  A VP   +D++      KW 
Sbjct: 368 VVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAGVPEYTDDLVIKECEEKWT 427

Query: 184 MDTPNLVRLQRTQEACQGGLVCGIHNIQEQLQLQS-SRMEFAERQFQTYWNYVKRRDATI 231
           +D   + +L+   E  +G  + G+    E+L  QS S M+F   Q       +K   A +
Sbjct: 428 IDMKAVSKLRERSE--RGRELPGVTRAMEELLEQSCSMMDFLIEQRAEMVEKLKTMQADL 487

[Close]

BLAST of Spg010838 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-10
Identity = 68/265 (25.66%), Postives = 104/265 (39.25%), Query Frame = 0


Query: 44  PIPEMGGLLRHQSQQLNVAVRE-VGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQR 103
           P+ E    +++ +QQ  + V E V   GA+W +      T   + L   A  W  F+K R
Sbjct: 125 PVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSR 184

Query: 104 LLPTTHDSTVSRDRVLL-----------------------------AFAIPELSV---ST 163
           LLPTTH  TVS+DR+LL                             A   P L       
Sbjct: 185 LLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRN 244

Query: 164 ARVP----------TSNEDIIFMFKWIMDTPNLVRLQ--------RTQEACQGGLVCGIH 223
           AR P          T   D I + +   + P     Q         +     G ++  + 
Sbjct: 245 ARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLK 304

Query: 224 NIQEQLQLQS-------SRMEFAERQFQTYWNYVKRRDATIKKALQSNFSKPYQAFPVFP 251
            ++++L  Q        S ++   +Q Q +W Y K RD  +KKALQ+NF++P   FP FP
Sbjct: 305 ALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFP 364

[Close]

BLAST of Spg010838 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-09
Identity = 60/252 (23.81%), Postives = 99/252 (39.29%), Query Frame = 0


Query: 44  PIPEMGGLLRHQSQ-QLNVAVREVGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQR 103
           P+ E    + + ++ +L   +  V   GA+W +      T   + L   A  W  F+K R
Sbjct: 55  PVDEHSEFIENITEPELITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSR 114

Query: 104 LLPTTHDSTVSRDRVLL--------AFAIPELSVSTARVPTSNEDIIFMFKWIM-----D 163
           LLPTTH   VS+DR+LL        +  +  +  S  R   + +     F  ++     +
Sbjct: 115 LLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRN 174

Query: 164 TPNLVRLQRTQEACQGGLVCGIHNIQE-------------------------------QL 223
            P LV  ++     +   +      QE                                L
Sbjct: 175 APFLVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKAL 234

Query: 224 QLQSSRMEFAERQFQTYWNYVKRRDATIKKALQSNFSKPYQAFPVFPDDLLNPWIQPPPV 251
           + + S+ E   +Q Q +W Y K RD  +KKALQ+NF++P   FP FP ++L         
Sbjct: 235 EQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEILQDLDYEYEA 294

[Close]

BLAST of Spg010838 vs. ExPASy TrEMBL
Match: A0A061FAJ6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032752 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 57  QQLNVAVREVGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQRLLPTTHDSTVSRDR 116
           Q  N  +  + I+GAQW+    E  +F+ + +K E   WL FV  RLLP+TH S V++DR
Sbjct: 128 QDCNEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDR 187

Query: 117 VLLAFAI 124
            +L +AI
Sbjct: 188 AVLIYAI 194

[Close]

BLAST of Spg010838 vs. ExPASy TrEMBL
Match: W9QTD9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 57  QQLNVAVREVGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQRLLPTTHDSTVSRDR 116
           +QL V + EV I+GA W++      T     LK  A  W  F+  R +P+TH  TV++DR
Sbjct: 83  EQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDR 142

Query: 117 VLLAFAI 124
           VLL ++I
Sbjct: 143 VLLLYSI 149

[Close]

BLAST of Spg010838 vs. ExPASy TrEMBL
Match: A0A2P5DDA9 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_074190 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 24/66 (36.36%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 58  QLNVAVREVGIDGAQWRLPKTEKRTFQAAYLKSEANTWLGFVKQRLLPTTHDSTVSRDRV 117
           +L + +  + + GA+W +   +      + L   AN W  F+K RLLPTTH  TVS++RV
Sbjct: 4   ELAMVLETIAVAGAEWNVSSQDAYICLRSSLNPPANVWYHFLKSRLLPTTHGKTVSKERV 63

Query: 118 LLAFAI 124
           LL +++
Sbjct: 64  LLLYSM 69

The following BLAST results are available for this feature:

BLAST of Spg010838 vs. NCBI nr


Match Name	E-value	Identity	Description
PON46472.1	3.3e-10	25.66	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON78020.1	6.2e-09	23.81	hypothetical protein PanWU01x14_023740 [Parasponia andersonii]	[more]
XP_038904385.1	2.5e-05	35.63	uncharacterized protein LOC120090747 [Benincasa hispida]	[more]
EOY13933.1	2.5e-05	41.79	Uncharacterized protein TCM_032752 [Theobroma cacao]	[more]
XP_024971944.1	3.2e-05	25.49	uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus]	[more]

BLAST of Spg010838 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BCG4	1.6e-10	25.66	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5DXM3	3.0e-09	23.81	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE...	[more]
A0A061FAJ6	1.2e-05	41.79	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032752 PE=4 SV=1	[more]
W9QTD9	1.0e-04	40.30	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1	[more]
A0A2P5DDA9	2.9e-04	36.36	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]

BLAST of Spg010838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 171..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010838.1	Spg010838.1	mRNA