Spg010779 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010779
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	chloroplast RNA-binding protein 29
Location	scaffold10: 6779148 .. 6784168 (-)
RNA-Seq Expression	Spg010779
Synteny	Spg010779

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAGAAAGATATCAAGGAGGCCGAGACCTCCAGTGACTCAGAAACAGAATCCGACTAAGAGATCAAGGAATTGGATGACGACCAAGTCCCTATCTCTGCAGCATTGAGGAAAAAGAGAAGAAGAGAGATCAGGACCGAAAGGAGGACCAAAAACAAGAATGACCCCATATTTGCCAAGAGGCCGAGGACTAGGTCCATTGACGACTCTCCTGCAGCTCCTCCAACCGTCTCACCCGCCAAGCCGAAATTCAAATCTCCTAAGGCTGCATCTCTTAAAACTCCATTCCCCAAAGTCTTCAGAGATGTCAATTTTCAGGAAAGGATGGAGATAATGAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAATAGAGCGGGAGCACTGCCAGAGTTCATAACCAGAGTTATCTCACAGTATAAATGGCAAGAGTTTTGTGCTCACCCTCAGGAGGTCGTGGTGCCTTTAGTGCGAGAATTTTACGCCAGCCTAAGGGAGAAGAGCATAAGTATGGCAGTGGTGAGAGGCAAGATGGTCAGCTTTTCTTCAGTGGGCATCAACAGGGTGTACAAGATTAAAGCACCCTTGCATCCAAGAGGAAATGATGCCATTCGGAACCCCTCGGCCAAACAAATGAGAGATGCACTGAAATTGGTGGCCAACAAGGGTGTTCAGTGGAAAGGGTCCCAAACGAAGGTGAAGACACTAGTGTCAGGCGACCTAAAGACTAGATCTGCAGTATGGCTTCACTTTATCAAGAACCGATTGATACCAACCACCCATGACTGCACCATCTCAGTGGAGATAGTTATGCTTCTCTAATGTATTATGAAGGGGTTGGAGATCAACATCGGGAGCATTATCAGGGAGGAGATTCTTGCCTGTGGAAAGAAAAGAGCAGGAAAACTTTTCTTTGGGTCATTAATCACCCAGCTTTGTCAGAGGGTGAAGATAGTTCCTGGTAAGGATGAGGAGCGTCATTTCTTCAAGCCTACCATTGACCTGTCCTTGATTGGGAAGCTCCAACAAAATAATGCCCAAAGGAAAGACAAAGCCTCCACATCTCAGGCCACTCCACCATCAGGGCTGAACACGACCTCTCCATCTTAGCACACTCCTTTTTCAGGACCCTCACTGTCATCTGAAGCCCTAACAATTGCCTATCAACAGCTGGATCAACTCAAGGATAACCTGAGGACTTATTGGGCATATGCCAAGGAGAAAGATAAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCGAGTATTGCTCCCGTCTTTCTCGATTTCCCTCAATCGCTGCTGCCTAGAGAAGATAAGGATTCTGATGATGAAGAAGAAGAGAATGATGATGAAGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTACGGGAGTTTTTTTACCCCTTTACATGTTTTTTGTATATAATATTGTTTTATGTGTTTAGTTGTTTGCTATCTTTTTAGTTTTTGCATGTTTAGATTCTGTTTTTGCTTATCTAGTTGTTGTTTTGTTGATTGAATTTTTATTTAATTGTTAGTTGAAGTTTCTAGGTTAGTTTTAAAGGTAGTTGTTTTGTGAATAATTGCATTCTACTTGGGTTTTTGATCTACTGCTGTCTTTTATTGAACCAAGGAAACTTTTGAAAAAAAAATCAACTTTAAGAAAAATTGCTTGGAAGAAATGTTTTGGGAAAAAAACATGTTTTCAAAGGAGTTTTCTTTTAAGCCCTTGATGATGATAACTAGAGCTTTGTTCTATCTCAAAAGTGTCACCGTCACAACTGAATTGTTTTCTAGTCATAGGCTTTCCACTAGTCTTTTTCTTTACAGAATTTTCTTAAGTCTAAACTTCCTCATGTTTAACCTTTCTAACACACTAGGAGAGTTTAGCCTTAAAGTTTTGAAAAACAAAAAGCCTTATGCAAAGCCTATGCCTAAAAAACAAAGCCAATGAGGACATTGTCTAATTTTAAGTTTGGGGGGTGCTTTACTTTGTAAATTTTTATGCTTTATGCTATGCTTTTTGTAAATTTGTACTGCTGGAAAAAGAATATGTGCTCAGTATCATTTGGAAAAAAAAATTGAAAAACCGAGGTTACTCCTCTTTCCTAGGGTTTACTGAGTAACCAGGGGCATTCATGACACCCATGGTTTGCCACTGCATGAAAGGTTTGCTTAAGGGAAGTGAGTATTATTCCAAGCTTGTGAACTTTGCTCGTAGCTAGATATCTTCACCACAAAGTATCGATAAGCTAAAACAAAGGTAAAGATGACAGCAAGGATACTCTTGGGAAAAAAAAAGATGTTGAATAAGAAGAGCACCAACGGTCAAATAAGTTTGGGGGAGATAGAAAGAGGTCTAGTAACTCATGTATGCTCAAGGGACCTCAAGTCTTGTTTTTCTTAACTAAAAGGACTACACTAGGCTCAATAAGTAGAAGTTAGGTAGTTTAAACATATTGATTAGGATGGACTAGGGAGAGTTTTGCTTTGAAAAAGAACAATAGAAATCTTCATGCCTAGGAAACTTAGACGTTGTGACTGGCACTAGAGTACAACCCTCTCCTGAAAGGCAAACATTTTAGAAAACAATCTTGAAAAACATGTTTACTTGATTTCATGTCACTAGATTTGCAATTAAAAGTTGATGCTAGTACCATGATTGATCACTACATATGATCCATAACGTTTTGGTTTGCAATTAGTATTGAGCTCTCAAATTCTGATTAGCAATTAAAAAGTTGATCTCTAACATTTTGATTGGCTATTGCTTGAGGACAAGCAATGAGTTAAGTTTGGGGGTATGATAAGGATAAAAAATATACCTATTTTACCCTTATATTTAGCTCATTATCTTGTCAAAGTTATATGTTAATAGGGTTTAATGAAATTTTATAAACTTTTTAGTACGGTGGGCCCAATTTAAACAAATAAGTAAACTTTTTATAAAGAATTAATTTTAACACAAGGTGGTCAACAAATTAGAAATAAAAACACCCAAATTAATTCCAATGTAAATGTTGTCCATAAACATTAAAAATAAATTATAGGAATTAATTTCATGCAAATAACGATAAAGAAAATTAATTGCAAAAATTATATAGTAGAGGGTTAGAGAAAATAACACCGGAAAATTATAGTGGTTCGGCAAACGGCCTACTCCACTCCCCAAGCTCCTCTTGGGTATTCAATTGAAGAACACGACTCTTTCCACGGCTTAGAGTCCAACCGGTACAATGTTCTTTTTCCGAGAGCAAGAACAAACCCGATCCTTTCCACGGTTTAGGATCAAACTGTTACAACCGCTCTTTTTAGGGCTCAAGAGCAACCCTCACAAAGAATTTGGAATTTTAAGAACAAGATTACAAACTCTCAAAATAGTGGATATACAATTTTTTGCTCACAAATTTGTAAGAAAAATTCTTACAAATTAATGCCCTCAAATGGCTAAGAAAAATAAAATTGAATAGCTCAAGAATCTCTCAAAATAAAACTCTCACAAAAAATTTAAAGTAACATTGAAGAATTGGAGAGAAGAAACATGTAGGAATTGGAGAGAATTTAGAGAGGGGAATTGTTGTTTGACTTTGAGAGAGAATGAGGGGATAAATAGGAAGGAAATGGAGTTGAAAGAAAATTTGAAATCGAGCTTAATTTGGACCATTGGATTGAAGTTAAAGAAAAACCAAGGGTGGAGATTAAAAGAAATTTAAAATAATAATATTAATAATAATCAAATAAAATATATGTATGAGAGAAACGGTAAAAGAGATTTGAAAAAAAATGATTTTGATTTTTTTTATGGAAGCATTTATAATGCTTTCATATTTTTTTTTAATATCTTTTTTTATTTTTTATTTTTTGGGGGATTCGAACCACAGACCTTGTGGTTATCAATACAACTTTATGCCAGTTAAGCTAAGCTCTTGTTGACTTTTTTTTTTTTTTTTTAATATCAAATAGCCGTTTGACACATTATATATTTAAATAAATTAATATAAATATATAATAAATATATGTTTAAATAATCAAAAGCCCATGTGTCTCTCTCCCATTAATCCACGTGTCGTTGTCTGATTGGTCTATGATGTTGACTCAGCTGCCACGTCATCGCCACTAGTATTTTCCATTAAATCTTGTTTCGACTATAACTTCTTCGTTTTAGCTCCGATTTGAGTGATTCAAGAGGCGTTGGAATCGTTGTTACAAGCTCTACGCTATGGGCAGATTAAAACACTAAAATTTTCAGTAATTAAAAATTGGGTTTGTTATCATCAAAACATTGATTAATTAATTAATTAAAATTAATTAATTTGAGATTAAGGGCCAAAAAGCAAACATATAGTTCTATTCTTCCTCTCAACAACACCGTTTTGTTGTGGAGTCCATGGAATTATCACAGAAATCTTTTGATTTCATTTGAATTGAATTCTCCCCCTGTCTGATCTCAATGTCTTTATGTAATAATCACTTTCCTTTTCAACCAGAGCTTTAAATCTCTTGAACATGTCAAATAACTTTCATTTCTTCTCAACAAAACAAACCCAACACTACTACAAAAACAACTTTTAATGACAGACAGAAAAAAGGGCGGGGAGCATTTAATGTCGGACGAAAAACGCACGGGTCTTTAATGATGGACGACACAAAAAAACACGATTTTTTTTCTTAAAATAGAGATTCACCTTTAATGGCGGTCAAAGACCGCCATTAAAAGTGAACCACTTTACCCTTTTTAGAGGTCAGTTTCTCTCTCCCCGAGCTTTCTTCCTCTGAGACATCCCTCACGCTCTCATCCCTTTCTAACCCTAAAATCAAATTCTTCTCTCTCAATCCTTCTTCCCTTCGCCTTCTTTCCAATCACATTTCCATTTCCTCTTTCATTCTTCGTTCTGATAGGGTTTCTCCACGCTTCCCCTCTCGCTTCATTAGAAATGTCGTCGTCTCGTCCGATTTCGAACAGGAGGAAGAAACCCTTGACGCCTATGGAGACGACTCGAAGTAG

mRNA sequence

ATGAAGAACAGAAAGATATCAAGGAGGCCGAGACCTCCAGTGACTCAGAAACAGAATCCGACTAAGAGATCAAGGAATTGGATGACGACCAAGTCCATTGACGACTCTCCTGCAGCTCCTCCAACCGTCTCACCCGCCAAGCCGAAATTCAAATCTCCTAAGGCTGCATCTCTTAAAACTCCATTCCCCAAAGTCTTCAGAGATGTCAATTTTCAGGAAAGGATGGAGATAATGAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAATAGAGCGGGAGCACTGCCAGAGTTCATAACCAGAGTTATCTCACAGTATAAATGGCAAGAGTTTTGTGCTCACCCTCAGGAGGTCGTGGTGCCTTTAGTGCGAGAATTTTACGCCAGCCTAAGGGAGAAGAGCATAAGTATGGCAGTGGTGAGAGGCAAGATGGTCAGCTTTTCTTCAGTGGGCATCAACAGGGTGTACAAGATTAAAGCACCCTTGCATCCAAGAGGAAATGATGCCATTCGGAACCCCTCGGCCAAACAAATGAGAGATGCACTGAAATTGGTGGCCAACAAGGGTGTTCAGTGGAAAGGGTCCCAAACGAAGGGGTTGGAGATCAACATCGGGAGCATTATCAGGGAGGAGATTCTTGCCTGTGGAAAGAAAAGAGCAGGAAAACTTTTCTTTGGGTCATTAATCACCCAGCTTTGTCAGAGGGTGAAGATAGTTCCTGGACCCTCACTGTCATCTGAAGCCCTAACAATTGCCTATCAACAGCTGGATCAACTCAAGGATAACCTGAGGACTTATTGGGCATATGCCAAGGAGAAAGATAAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCGAGTATTGCTCCCGTCTTTCTCGATTTCCCTCAATCGCTGCTGCCTAGAGAAGATAAGGATTCTGATGATGAAGAAGAAGAGAATGATGATGAAGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTACGGGATGGTTCGGCAAACGGCCTACTCCACTCCCCAAGCTCCTCTTGGGTATTCAATTGAAGAACACGACTCTTTCCACGGCTTAGAGTCCAACCGGGTTTCTCCACGCTTCCCCTCTCGCTTCATTAGAAATGTCGTCGTCTCGTCCGATTTCGAACAGGAGGAAGAAACCCTTGACGCCTATGGAGACGACTCGAAGTAG

Coding sequence (CDS)

ATGAAGAACAGAAAGATATCAAGGAGGCCGAGACCTCCAGTGACTCAGAAACAGAATCCGACTAAGAGATCAAGGAATTGGATGACGACCAAGTCCATTGACGACTCTCCTGCAGCTCCTCCAACCGTCTCACCCGCCAAGCCGAAATTCAAATCTCCTAAGGCTGCATCTCTTAAAACTCCATTCCCCAAAGTCTTCAGAGATGTCAATTTTCAGGAAAGGATGGAGATAATGAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAATAGAGCGGGAGCACTGCCAGAGTTCATAACCAGAGTTATCTCACAGTATAAATGGCAAGAGTTTTGTGCTCACCCTCAGGAGGTCGTGGTGCCTTTAGTGCGAGAATTTTACGCCAGCCTAAGGGAGAAGAGCATAAGTATGGCAGTGGTGAGAGGCAAGATGGTCAGCTTTTCTTCAGTGGGCATCAACAGGGTGTACAAGATTAAAGCACCCTTGCATCCAAGAGGAAATGATGCCATTCGGAACCCCTCGGCCAAACAAATGAGAGATGCACTGAAATTGGTGGCCAACAAGGGTGTTCAGTGGAAAGGGTCCCAAACGAAGGGGTTGGAGATCAACATCGGGAGCATTATCAGGGAGGAGATTCTTGCCTGTGGAAAGAAAAGAGCAGGAAAACTTTTCTTTGGGTCATTAATCACCCAGCTTTGTCAGAGGGTGAAGATAGTTCCTGGACCCTCACTGTCATCTGAAGCCCTAACAATTGCCTATCAACAGCTGGATCAACTCAAGGATAACCTGAGGACTTATTGGGCATATGCCAAGGAGAAAGATAAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCGAGTATTGCTCCCGTCTTTCTCGATTTCCCTCAATCGCTGCTGCCTAGAGAAGATAAGGATTCTGATGATGAAGAAGAAGAGAATGATGATGAAGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTACGGGATGGTTCGGCAAACGGCCTACTCCACTCCCCAAGCTCCTCTTGGGTATTCAATTGAAGAACACGACTCTTTCCACGGCTTAGAGTCCAACCGGGTTTCTCCACGCTTCCCCTCTCGCTTCATTAGAAATGTCGTCGTCTCGTCCGATTTCGAACAGGAGGAAGAAACCCTTGACGCCTATGGAGACGACTCGAAGTAG

Protein sequence

MKNRKISRRPRPPVTQKQNPTKRSRNWMTTKSIDDSPAAPPTVSPAKPKFKSPKAASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGFSNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQWKGSQTKGLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVKIVPGPSLSSEALTIAYQQLDQLKDNLRTYWAYAKEKDKAIREFYLSITPSIAPVFLDFPQSLLPREDKDSDDEEEENDDEEDEEKESSSDEDYGMVRQTAYSTPQAPLGYSIEEHDSFHGLESNRVSPRFPSRFIRNVVVSSDFEQEEETLDAYGDDSK

Homology

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BLAST of Spg010779 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 99.4 bits (246), Expect = 7.5e-17
Identity = 75/239 (31.38%), Postives = 107/239 (44.77%), Query Frame = 0


Query: 51  KSPKAASLKTPFPKVFRDVNFQERMEIMRKRDFLN-EKGF----SNRAGALPEFITRVIS 110
           K+ KA   +T   +   + N Q R         LN EKGF    S   G LP FI +VI+
Sbjct: 9   KAHKAVKFETEAAETRYENNIQNRP--------LNAEKGFVLDNSETMGQLP-FIAQVIT 68

Query: 111 QYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHP 170
           Q+ W++FCAHP++ +VPLVREFYA+L +   +   VRG  VS+S   IN V+ +  P+  
Sbjct: 69  QHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGDPVDE 128

Query: 171 RGNDAIRNPSAKQMRDALKLVANKGVQWK------------------------------- 230
             ++ I N +   +   L+ VA  G +W                                
Sbjct: 129 H-SEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLP 188

Query: 231 ---------------GSQTKGLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVK 239
                           S   G  IN+G +I  EI AC  ++ G LFF SLIT+LC+  +
Sbjct: 189 TTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNAR 237

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BLAST of Spg010779 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-16
Identity = 95/356 (26.69%), Postives = 146/356 (41.01%), Query Frame = 0


Query: 78  MRKRDFLNEKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLRE 137
           ++ R    EKGF    S   G LP FI +VI+Q+ W++FCAHP++ +VPLVREFYA+L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 97

Query: 138 KSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW 197
              +   VRG  VS+S   IN V+ +  P+    ++ I+N + + +   L+ VA  G +W
Sbjct: 98  PEENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEW 157

Query: 198 K----------------------------------------------GSQTKGLEINIGS 257
                                                           S   G  IN+G 
Sbjct: 158 NVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGR 217

Query: 258 IIREEILACGKKRAGKLFFGSLITQLCQRVK------------------------IVPGP 317
           +I  EI AC  ++ G LFF SLIT+LC+  +                           GP
Sbjct: 218 MIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQEGP 277

Query: 318 SLSSEALTIA--------------YQQLDQLKDNL---------------------RTYW 325
           + S++  + +               QQL  L+  L                     + +W
Sbjct: 278 TESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFW 337

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BLAST of Spg010779 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 86.7 bits (213), Expect = 5.1e-13
Identity = 61/232 (26.29%), Postives = 100/232 (43.10%), Query Frame = 0


Query: 56  ASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEF 115
           AS    F     ++ ++E ++    R    EK F   +++    P FI  VI Q+ WQ F
Sbjct: 40  ASKAVKFESKAAEIRYEENIQ---NRPLSVEKEFVWDNSKPLEQPPFIADVIIQHNWQLF 99

Query: 116 CAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIR 175
           CAHP++ +VPLVREFY ++         +RG  V  S   IN ++ +  P+    ++ + 
Sbjct: 100 CAHPEDPIVPLVREFYTNMTNPDDDTVYIRGVQVPLSVEAINTIFSLGDPIDEH-SEFVE 159

Query: 176 NPSAKQMRDALKLVANKGVQW----KGSQT------------------------------ 235
           + +  ++   L+ VA  G +W    +G+ T                              
Sbjct: 160 DITKPELVIVLETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTV 219

Query: 236 ------------KGLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVK 239
                        G  IN+G +I  EI AC  +++G LFF SLIT +C+  +
Sbjct: 220 SKEHVSLLYSMLTGKSINVGRMIHREICACAARKSGALFFPSLITSMCRNTR 267

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BLAST of Spg010779 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-11
Identity = 51/148 (34.46%), Postives = 75/148 (50.68%), Query Frame = 0


Query: 54  KAASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQ 113
           + AS    F     +  ++E ++    R    EKGF   +++    P FI  VI+Q+ WQ
Sbjct: 8   RKASKAVKFKSEAAETRYEENIQ---NRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQ 67

Query: 114 EFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPL--HPRGN 173
            FCAHP++ +VPLVREFYA++         VRG  V  SS  IN +Y +  P+  H    
Sbjct: 68  LFCAHPEDPIVPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGDPIDEHSEFV 127

Query: 174 DAIRNPSAKQMRDALKLVANKGVQWKGS 197
           +AI  P   ++   L+ VA  G +W  S
Sbjct: 128 EAITEP---ELATVLETVAIAGAEWNVS 149

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BLAST of Spg010779 vs. NCBI nr
Match: TYH88163.1 (hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum])

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-10
Identity = 66/229 (28.82%), Postives = 94/229 (41.05%), Query Frame = 0


Query: 56  ASLKTPFPKVFRDVNFQERME-IMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQE 115
           +S  TP   +  D   +ER + I + +  + EKGF   SN     P  I + I+ +KW+ 
Sbjct: 8   SSKTTPKNPILIDEEVKERFDSIFKHQPMMPEKGFDLKSNDLMVAPIPIRKKINAFKWER 67

Query: 116 FCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAI 175
           FC         LVREFYASL  +  +  +VR K V  +S  IN ++ +           I
Sbjct: 68  FCNACSFSDDELVREFYASLTTQDATEVIVRKKKVPPTSKSINDLFNLPDVEEDEYYPMI 127

Query: 176 RNPSAKQMRDALKLVANKGVQW---------------------------------KGSQT 235
            N +   ++  L +V N G QW                                   S T
Sbjct: 128 NNMNWDFLQQVLDVVTNSGSQWIIRKYGSHSCRREYLKPIANVWFYFVQYSFMPISHSYT 187

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BLAST of Spg010779 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-17
Identity = 75/239 (31.38%), Postives = 107/239 (44.77%), Query Frame = 0


Query: 51  KSPKAASLKTPFPKVFRDVNFQERMEIMRKRDFLN-EKGF----SNRAGALPEFITRVIS 110
           K+ KA   +T   +   + N Q R         LN EKGF    S   G LP FI +VI+
Sbjct: 9   KAHKAVKFETEAAETRYENNIQNRP--------LNAEKGFVLDNSETMGQLP-FIAQVIT 68

Query: 111 QYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHP 170
           Q+ W++FCAHP++ +VPLVREFYA+L +   +   VRG  VS+S   IN V+ +  P+  
Sbjct: 69  QHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGDPVDE 128

Query: 171 RGNDAIRNPSAKQMRDALKLVANKGVQWK------------------------------- 230
             ++ I N +   +   L+ VA  G +W                                
Sbjct: 129 H-SEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLP 188

Query: 231 ---------------GSQTKGLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVK 239
                           S   G  IN+G +I  EI AC  ++ G LFF SLIT+LC+  +
Sbjct: 189 TTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNAR 237

[Close]

BLAST of Spg010779 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-17
Identity = 95/356 (26.69%), Postives = 146/356 (41.01%), Query Frame = 0


Query: 78  MRKRDFLNEKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLRE 137
           ++ R    EKGF    S   G LP FI +VI+Q+ W++FCAHP++ +VPLVREFYA+L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 97

Query: 138 KSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW 197
              +   VRG  VS+S   IN V+ +  P+    ++ I+N + + +   L+ VA  G +W
Sbjct: 98  PEENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEW 157

Query: 198 K----------------------------------------------GSQTKGLEINIGS 257
                                                           S   G  IN+G 
Sbjct: 158 NVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGR 217

Query: 258 IIREEILACGKKRAGKLFFGSLITQLCQRVK------------------------IVPGP 317
           +I  EI AC  ++ G LFF SLIT+LC+  +                           GP
Sbjct: 218 MIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQEGP 277

Query: 318 SLSSEALTIA--------------YQQLDQLKDNL---------------------RTYW 325
           + S++  + +               QQL  L+  L                     + +W
Sbjct: 278 TESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFW 337

[Close]

BLAST of Spg010779 vs. ExPASy TrEMBL
Match: A0A2P5DAQ2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-13
Identity = 61/232 (26.29%), Postives = 100/232 (43.10%), Query Frame = 0


Query: 56  ASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEF 115
           AS    F     ++ ++E ++    R    EK F   +++    P FI  VI Q+ WQ F
Sbjct: 40  ASKAVKFESKAAEIRYEENIQ---NRPLSVEKEFVWDNSKPLEQPPFIADVIIQHNWQLF 99

Query: 116 CAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIR 175
           CAHP++ +VPLVREFY ++         +RG  V  S   IN ++ +  P+    ++ + 
Sbjct: 100 CAHPEDPIVPLVREFYTNMTNPDDDTVYIRGVQVPLSVEAINTIFSLGDPIDEH-SEFVE 159

Query: 176 NPSAKQMRDALKLVANKGVQW----KGSQT------------------------------ 235
           + +  ++   L+ VA  G +W    +G+ T                              
Sbjct: 160 DITKPELVIVLETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTV 219

Query: 236 ------------KGLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVK 239
                        G  IN+G +I  EI AC  +++G LFF SLIT +C+  +
Sbjct: 220 SKEHVSLLYSMLTGKSINVGRMIHREICACAARKSGALFFPSLITSMCRNTR 267

[Close]

BLAST of Spg010779 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11
Identity = 51/148 (34.46%), Postives = 75/148 (50.68%), Query Frame = 0


Query: 54  KAASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQ 113
           + AS    F     +  ++E ++    R    EKGF   +++    P FI  VI+Q+ WQ
Sbjct: 8   RKASKAVKFKSEAAETRYEENIQ---NRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQ 67

Query: 114 EFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPL--HPRGN 173
            FCAHP++ +VPLVREFYA++         VRG  V  SS  IN +Y +  P+  H    
Sbjct: 68  LFCAHPEDPIVPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGDPIDEHSEFV 127

Query: 174 DAIRNPSAKQMRDALKLVANKGVQWKGS 197
           +AI  P   ++   L+ VA  G +W  S
Sbjct: 128 EAITEP---ELATVLETVAIAGAEWNVS 149

[Close]

BLAST of Spg010779 vs. ExPASy TrEMBL
Match: A0A5D2MA47 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G168900v1 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-10
Identity = 66/229 (28.82%), Postives = 94/229 (41.05%), Query Frame = 0


Query: 56  ASLKTPFPKVFRDVNFQERME-IMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQE 115
           +S  TP   +  D   +ER + I + +  + EKGF   SN     P  I + I+ +KW+ 
Sbjct: 8   SSKTTPKNPILIDEEVKERFDSIFKHQPMMPEKGFDLKSNDLMVAPIPIRKKINAFKWER 67

Query: 116 FCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAI 175
           FC         LVREFYASL  +  +  +VR K V  +S  IN ++ +           I
Sbjct: 68  FCNACSFSDDELVREFYASLTTQDATEVIVRKKKVPPTSKSINDLFNLPDVEEDEYYPMI 127

Query: 176 RNPSAKQMRDALKLVANKGVQW---------------------------------KGSQT 235
            N +   ++  L +V N G QW                                   S T
Sbjct: 128 NNMNWDFLQQVLDVVTNSGSQWIIRKYGSHSCRREYLKPIANVWFYFVQYSFMPISHSYT 187

[Close]

BLAST of Spg010779 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 43.5 bits (101), Expect = 4.6e-04
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 368 FPSRFIRNVVVSSDFEQEEETLDAYGDDS 397
           +PSRF+RNV VSSDFE EE+ + A GDDS
Sbjct: 59  YPSRFVRNVAVSSDFEVEEDDMFADGDDS 87

[Close]

BLAST of Spg010779 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 43.5 bits (101), Expect = 4.6e-04
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 368 FPSRFIRNVVVSSDFEQEEETLDAYGDDS 397
           +PSRF+RNV VSSDFE EE+ + A GDDS
Sbjct: 59  YPSRFVRNVAVSSDFEVEEDDMFADGDDS 87

[Close]

BLAST of Spg010779 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 43.5 bits (101), Expect = 4.6e-04
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 368 FPSRFIRNVVVSSDFEQEEETLDAYGDDS 397
           +PSRF+RNV VSSDFE EE+ + A GDDS
Sbjct: 59  YPSRFVRNVAVSSDFEVEEDDMFADGDDS 87

[Close]

BLAST of Spg010779 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 43.5 bits (101), Expect = 4.6e-04
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 368 FPSRFIRNVVVSSDFEQEEETLDAYGDDS 397
           +PSRF+RNV VSSDFE EE+ + A GDDS
Sbjct: 59  YPSRFVRNVAVSSDFEVEEDDMFADGDDS 87

The following BLAST results are available for this feature:

BLAST of Spg010779 vs. NCBI nr


Match Name	E-value	Identity	Description
PON35554.1	7.5e-17	31.38	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PON46472.1	1.3e-16	26.69	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON70375.1	5.1e-13	26.29	hypothetical protein PanWU01x14_080440 [Parasponia andersonii]	[more]
PON65868.1	3.6e-11	34.46	hypothetical protein PanWU01x14_113570 [Parasponia andersonii]	[more]
TYH88163.1	6.8e-10	28.82	hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum]	[more]

BLAST of Spg010779 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010779 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5AGA5	3.7e-17	31.38	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5BCG4	6.2e-17	26.69	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5DAQ2	2.5e-13	26.29	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE...	[more]
A0A2P5CXV1	1.8e-11	34.46	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE...	[more]
A0A5D2MA47	3.3e-10	28.82	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G168900v1 P...	[more]

BLAST of Spg010779 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53460.1	4.6e-04	68.97	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	4.6e-04	68.97	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	4.6e-04	68.97	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	4.6e-04	68.97	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 301..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..352
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..327

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010779.1	Spg010779.1	mRNA