Spg010753 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010753
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCHC-type domain-containing protein
Location	scaffold10: 7675408 .. 7676465 (-)
RNA-Seq Expression	Spg010753
Synteny	Spg010753

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGAAGAGGAGGGTCGTCGGCGCCGCTTGCAGCAGTCGTCCGGTGGTCAGATTCGGTCGTCGGGCTCTCCTCTGTTCAGAGGAGTTTCCCTCAGGCAAGTTTGTTTGCCTGTTTTCCTCCTTCTTTGGAAGGTCATTGCTAGCCATGGATGTAATTGACAAGCTCTCAGCGCTCACACTCTCACAGAAGGAATCCAGCGGAATAAACACATCGGAGTTAGGCTTAACAGAAAATCAGGCAAAGCTCCAAAATTGTCTCGTAGGAAAGGTTGTATCTCAACGAACTATCAACATTGATGCTTTTCGGAAAACTATGGCAAACGTATGGTATTTATGTCGAGGGATTACCATTGATAATGTTGGGGACAGCATTTTTCTTATCAATCCACAGTCAATTTTGGGAAGAGATAGGATTGTGGAAGAGAGTCCGTGGTGTTTTGATGGCAACTTGATTCTTCTCAAAGTCCCAACAACTTTCGATCGCCCCGAAGATATGACTTTTGATGAACCACAATTTTGGGTTCAATTCCACCACCTTCCTCTTGGATTACGAAACAACAGAGTGGCACAAACGCTCGTGAGCCGAATAGGGATTGTCCATGATACGAATGAAATGGATGAATGTTGGGGTCGTTTTCTTTGAGATCGGATCAAGATGAAGATTGATGAGCCTCTCTGTTGGGGTTAACTCTAAATGGCGGACCATCTGGAAAAATCATGGTGGCGATAAAGTATGAGAGATTACCGGATTTCTGTTACTATTGCGGAATGATTGACCACAACGACGACTCATGCCCTCTGCTAAAAACACAGACGAAACCAGAAAAATAATTTGGTTCATGGATGCGAGCGGCTACTCCTCCGAGAAAACACCATTATTTCGCAAGCGGCCGAGGATTTGATGGCTTCTGAGGGGCAGAGGACGGTTTGGAAACAGACAGTGGGGAAAATTTTCGTGGCGATCTGAATCAATGGAAGAGGACAACGAACATGACCATGAAGAAAGACTTGGGTCCAGCCGATTCTCAAAAGTACAAATTGAAGTTTAGGGATTAA

mRNA sequence

ATGCGGAAGAGGAGGGTCGTCGGCGCCGCTTGCAGCAGTCGTCCGGTGGTCAGATTCGGTCGTCGGGCTCTCCTCTGTTCAGAGGAGTTTCCCTCAGGCAAGTTTGTTTGCCTGTTTTCCTCCTTCTTTGGAAGGTCATTGCTAGCCATGGATGTAATTGACAAGCTCTCAGCGCTCACACTCTCACAGAAGGAATCCAGCGGAATAAACACATCGGAGTTAGGCTTAACAGAAAATCAGGCAAAGCTCCAAAATTGTCTCGTAGGAAAGGTTGTATCTCAACGAACTATCAACATTGATGCTTTTCGGAAAACTATGGCAAACGTATGGTATTTATGTCGAGGGATTACCATTGATAATGTTGGGGACAGCATTTTTCTTATCAATCCACAGTCAATTTTGGGAAGAGATAGGATTGTGGAAGAGAGTCCGTGGTGTTTTGATGGCAACTTGATTCTTCTCAAAGTCCCAACAACTTTCGATCGCCCCGAAGATATGACTTTTGATGAACCACAATTTTGGGTTCAATTCCACCACCTTCCTCTTGGATTACGAAACAACAGAGTGGCACAAACGCTCGTGAGCCGAATAGGGATTGTCCATGATACGAATGAAATGGATGAATGTTGGGGTCAGGACGGTTTGGAAACAGACAGTGGGGAAAATTTTCGTGGCGATCTGAATCAATGGAAGAGGACAACGAACATGACCATGAAGAAAGACTTGGGTCCAGCCGATTCTCAAAAGTACAAATTGAAGTTTAGGGATTAA

Coding sequence (CDS)

ATGCGGAAGAGGAGGGTCGTCGGCGCCGCTTGCAGCAGTCGTCCGGTGGTCAGATTCGGTCGTCGGGCTCTCCTCTGTTCAGAGGAGTTTCCCTCAGGCAAGTTTGTTTGCCTGTTTTCCTCCTTCTTTGGAAGGTCATTGCTAGCCATGGATGTAATTGACAAGCTCTCAGCGCTCACACTCTCACAGAAGGAATCCAGCGGAATAAACACATCGGAGTTAGGCTTAACAGAAAATCAGGCAAAGCTCCAAAATTGTCTCGTAGGAAAGGTTGTATCTCAACGAACTATCAACATTGATGCTTTTCGGAAAACTATGGCAAACGTATGGTATTTATGTCGAGGGATTACCATTGATAATGTTGGGGACAGCATTTTTCTTATCAATCCACAGTCAATTTTGGGAAGAGATAGGATTGTGGAAGAGAGTCCGTGGTGTTTTGATGGCAACTTGATTCTTCTCAAAGTCCCAACAACTTTCGATCGCCCCGAAGATATGACTTTTGATGAACCACAATTTTGGGTTCAATTCCACCACCTTCCTCTTGGATTACGAAACAACAGAGTGGCACAAACGCTCGTGAGCCGAATAGGGATTGTCCATGATACGAATGAAATGGATGAATGTTGGGGTCAGGACGGTTTGGAAACAGACAGTGGGGAAAATTTTCGTGGCGATCTGAATCAATGGAAGAGGACAACGAACATGACCATGAAGAAAGACTTGGGTCCAGCCGATTCTCAAAAGTACAAATTGAAGTTTAGGGATTAA

Protein sequence

MRKRRVVGAACSSRPVVRFGRRALLCSEEFPSGKFVCLFSSFFGRSLLAMDVIDKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDECWGQDGLETDSGENFRGDLNQWKRTTNMTMKKDLGPADSQKYKLKFRD

Homology

[Close]

BLAST of Spg010753 vs. NCBI nr
Match: XP_040990949.1 (uncharacterized protein LOC121238174 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 105.1 bits (261), Expect = 8.9e-19
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 0


Query: 51  DVIDKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVW 110
           D+ +  +  +L+++E   I  ++  +  N  + + CLVG+V++ + IN +AF+ TM  VW
Sbjct: 4   DLSELWNKFSLTEEERYEIVITDQDIENNMGRGKLCLVGRVIADKKINKEAFKNTMLKVW 63

Query: 111 YLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDE 170
             C G  I  VGD++++   Q+    +RI    PW FD NL+ LK       P ++ F+ 
Sbjct: 64  KACAGTKIIEVGDNLYVFEFQTKGDLNRIWGGQPWLFDTNLVCLKNFDGVTPPSELNFNS 123

Query: 171 PQFWVQFHHLPLGLRNNRVAQTLVSRIG-IVHDTNEMD-ECWGQ 213
              WVQ H+LPLG  N  +   + S IG ++    + D  CWG+
Sbjct: 124 TTMWVQLHNLPLGYMNKEIGGRIGSTIGRVIEVEADFDGNCWGK 167

[Close]

BLAST of Spg010753 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-18
Identity = 49/157 (31.21%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 61  LSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDN 120
           L+++E+  +      + E  A+  NCL+GK++S+R +N++  R  M  VW L  G+ +  
Sbjct: 14  LTEEENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMHMVWKLAGGLQVRE 73

Query: 121 VGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHL 180
           +G+++F+   +S L ++R+ +++PW F+  L++LK    +D  ED+  D   FW Q H L
Sbjct: 74  IGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIKLDGCSFWKQAHDL 133

Query: 181 PLGLRNNRVAQTLVSRIGIVHDTNEMDEC-----WGQ 213
           PLG  N  + + +    G V    E+D C     WG+
Sbjct: 134 PLGFMNESIGRVIGESFGTV---EEIDTCGDKIAWGK 167

[Close]

BLAST of Spg010753 vs. NCBI nr
Match: XP_041016155.1 (uncharacterized protein LOC121258677 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-18
Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 57  SALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGI 116
           S  +L+++E   I  ++  +  N  + + CLVGKV++ + IN DAF+ T+  VW  C G+
Sbjct: 10  SKFSLTEEERYEIVITDHDIDNNMKRGRLCLVGKVIADKKINKDAFKNTLLKVWKACVGV 69

Query: 117 TIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQ 176
            I  VGD++++   Q+    ++I    PW FD NL+ +K       P D+ F+    WVQ
Sbjct: 70  KIHEVGDNLYVFEFQTEEDLNKIWGGQPWLFDTNLVCIKKFNGVTPPADLNFNSTTLWVQ 129

Query: 177 FHHLPLGLRNNRVAQTLVSRIGIV 201
            H+LPLG  N  +   + S IG V
Sbjct: 130 LHNLPLGCMNKEIGGRIGSTIGKV 153

[Close]

BLAST of Spg010753 vs. NCBI nr
Match: OMP10859.1 (hypothetical protein COLO4_04212 [Corchorus olitorius])

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-18
Identity = 50/156 (32.05%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 54  DKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLC 113
           D     +L+++E S +      +     + + CL+GK++S+R +NI+  R  +  VW L 
Sbjct: 7   DMWKKFSLTEEEESDVVVDPKLIANTLDEGKACLIGKLLSRRAVNIEVMRNILHWVWKLS 66

Query: 114 RGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQF 173
            G+ I  VGD +F+   +  + +DR+ ++SPW F+  L++L     F   E +  +E  F
Sbjct: 67  GGLQIQAVGDKLFIFQFEKEIEKDRVFQQSPWSFNKALLVLGEYDAFPNLESVRLEECSF 126

Query: 174 WVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC 210
           WVQ H LPLGL N  + + + S +G+V    E+D C
Sbjct: 127 WVQPHDLPLGLMNEGIGKVIGSSMGVV---EEVDTC 159

[Close]

BLAST of Spg010753 vs. NCBI nr
Match: TXG62009.1 (hypothetical protein EZV62_013372 [Acer yangbiense])

HSP 1 Score: 102.8 bits (255), Expect = 4.4e-18
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 83  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEE 142
           + +CLVGKV++ + IN +AF+  +  +W L   + I+ VG++IFL    +   RDRI + 
Sbjct: 59  INHCLVGKVLANQRINREAFKSVIEQLWSLFGPVDIEVVGENIFLFYFTNPADRDRIWQR 118

Query: 143 SPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIG-IVH 202
            PW FD +LI L+ P    +   + F+  +FWVQ H +PL   N R+A+ L  +IG ++ 
Sbjct: 119 GPWHFDRSLIELERPEGTGKISQLGFNRAEFWVQIHDIPLLCMNRRMAKWLAEQIGEVIE 178

Query: 203 DTNEMDECWGQ 213
             +E  +CWG+
Sbjct: 179 IPSESRDCWGK 189

[Close]

BLAST of Spg010753 vs. ExPASy TrEMBL
Match: A0A1R3GTB5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.6e-19
Identity = 49/157 (31.21%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 61  LSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDN 120
           L+++E+  +      + E  A+  NCL+GK++S+R +N++  R  M  VW L  G+ +  
Sbjct: 14  LTEEENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMHMVWKLAGGLQVRE 73

Query: 121 VGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHL 180
           +G+++F+   +S L ++R+ +++PW F+  L++LK    +D  ED+  D   FW Q H L
Sbjct: 74  IGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIKLDGCSFWKQAHDL 133

Query: 181 PLGLRNNRVAQTLVSRIGIVHDTNEMDEC-----WGQ 213
           PLG  N  + + +    G V    E+D C     WG+
Sbjct: 134 PLGFMNESIGRVIGESFGTV---EEIDTCGDKIAWGK 167

[Close]

BLAST of Spg010753 vs. ExPASy TrEMBL
Match: A0A1R3KUZ6 (DUF4283 domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_04212 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 50/156 (32.05%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 54  DKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLC 113
           D     +L+++E S +      +     + + CL+GK++S+R +NI+  R  +  VW L 
Sbjct: 7   DMWKKFSLTEEEESDVVVDPKLIANTLDEGKACLIGKLLSRRAVNIEVMRNILHWVWKLS 66

Query: 114 RGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQF 173
            G+ I  VGD +F+   +  + +DR+ ++SPW F+  L++L     F   E +  +E  F
Sbjct: 67  GGLQIQAVGDKLFIFQFEKEIEKDRVFQQSPWSFNKALLVLGEYDAFPNLESVRLEECSF 126

Query: 174 WVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC 210
           WVQ H LPLGL N  + + + S +G+V    E+D C
Sbjct: 127 WVQPHDLPLGLMNEGIGKVIGSSMGVV---EEVDTC 159

[Close]

BLAST of Spg010753 vs. ExPASy TrEMBL
Match: A0A5C7HZ89 (DUF4283 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_013372 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 83  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEE 142
           + +CLVGKV++ + IN +AF+  +  +W L   + I+ VG++IFL    +   RDRI + 
Sbjct: 59  INHCLVGKVLANQRINREAFKSVIEQLWSLFGPVDIEVVGENIFLFYFTNPADRDRIWQR 118

Query: 143 SPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIG-IVH 202
            PW FD +LI L+ P    +   + F+  +FWVQ H +PL   N R+A+ L  +IG ++ 
Sbjct: 119 GPWHFDRSLIELERPEGTGKISQLGFNRAEFWVQIHDIPLLCMNRRMAKWLAEQIGEVIE 178

Query: 203 DTNEMDECWGQ 213
             +E  +CWG+
Sbjct: 179 IPSESRDCWGK 189

[Close]

BLAST of Spg010753 vs. ExPASy TrEMBL
Match: A0A5C7HUW5 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015258 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-18
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 0


Query: 77  TENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGR 136
           +E    + +CLVGKV++ + +N +AF+K +  +W     + I+ VGD+ F+    S+  R
Sbjct: 31  SEGLKDVDHCLVGKVLAGKRVNREAFKKVIEQLWSPIGSVEIEAVGDNTFMFFFPSLEVR 90

Query: 137 DRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSR 196
             I    PW FD NLI+L+ PT       ++F   +FWVQ H+LPL   N R+A+ L  +
Sbjct: 91  SLIWSRGPWHFDRNLIVLEKPTGTGDISKLSFHMVEFWVQIHNLPLMCMNRRMARYLAEQ 150

Query: 197 IG-IVHDTNEMDECWGQ 213
           IG +V    +  ECWG+
Sbjct: 151 IGTVVELPTDSRECWGR 167

[Close]

BLAST of Spg010753 vs. ExPASy TrEMBL
Match: A0A5C7IHI0 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_003470 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.1e-18
Identity = 47/131 (35.88%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 83  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEE 142
           + +CLVGKV+S + +N +AF+  +  +W     + I+ VGD+ F+    +   RDRI + 
Sbjct: 37  VDHCLVGKVLSGKRVNREAFKTVIEQLWSPFGNVEIEVVGDNTFMFYFNNPEDRDRIWQR 96

Query: 143 SPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIG-IVH 202
            PW FD +LI+L+ P        + F++ +FWVQ H +P+   N R+A+ L  +IG +V 
Sbjct: 97  GPWHFDRSLIVLEKPEGMGDISQLCFNKAEFWVQIHDIPIMCMNKRMAKWLAEQIGRVVE 156

Query: 203 DTNEMDECWGQ 213
              E  ECWG+
Sbjct: 157 IPMESRECWGK 167

The following BLAST results are available for this feature:

BLAST of Spg010753 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_040990949.1	8.9e-19	32.32	uncharacterized protein LOC121238174 [Juglans microcarpa x Juglans regia]	[more]
OMO61345.1	1.2e-18	31.21	reverse transcriptase [Corchorus capsularis]	[more]
XP_041016155.1	1.5e-18	34.72	uncharacterized protein LOC121258677 [Juglans microcarpa x Juglans regia]	[more]
OMP10859.1	2.6e-18	32.05	hypothetical protein COLO4_04212 [Corchorus olitorius]	[more]
TXG62009.1	4.4e-18	36.64	hypothetical protein EZV62_013372 [Acer yangbiense]	[more]

BLAST of Spg010753 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010753 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3GTB5	5.6e-19	31.21	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV...	[more]
A0A1R3KUZ6	1.2e-18	32.05	DUF4283 domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_04212...	[more]
A0A5C7HZ89	2.1e-18	36.64	DUF4283 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_013372 ...	[more]
A0A5C7HUW5	3.6e-18	36.50	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01525...	[more]
A0A5C7IHI0	8.1e-18	35.88	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00347...	[more]

BLAST of Spg010753 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 77..206 e-value: 1.6E-21 score: 76.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010753.1	Spg010753.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process