Spg010746 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010746
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold10: 5633053 .. 5645884 (-)
RNA-Seq Expression	Spg010746
Synteny	Spg010746

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTCATCTTCTCCAACTCTTTCTTCTTGCGATCGAACTTCTGCTAGCCTCTGTTTTCACTACCGCTGGTTGCGTTTCTTTTTCGCCGTCGTTGACAACTGGTAGTCTTTCGTCGTGGGTCTTCCACCGTTTTGAGGTTTTTATCTCTCTTTAAAAACTATTTTGCTTTATTTTCTTGTAGAAGTTCCTTGCTAACATTTTTCAAGATGGGCTACAAAATTCGTAGAAGAGGCTACAAATTAGACATACTCTTTTTACGGCTATGTAACTCAAGAATAACAGAACAAAAAAAATTATGGCAAGAACCATAAAGAAATCAAACCTTGCTAATCTAATTCTCAAGATAGTACTGAGGGTCTATTGATATGCTATTCTCAAGAACATAAATGGGATCCTCTGACCTCTCATATTCTTGATAGTCATCCAATATTAATCTTCATACATAATGGACATTGGAGGGGATGAAATATCAAATAGATTACCTTGGCACCTTTTGTAGCTTTAATGATCACAAAGGTACTCGATCACCAACATTTGGAGCAGTGGTAGCATCTCGCTATTGAGGATGGAAATAAGTAAGATAATATTGTTTTAAAACCAGTCATACATTGCAATGAACTGGATAATGCTACAAGAATAAAAAACCATTTTTCTTACTGAAAGAGTTCATGCAATGGAGTCATGGAATAAGAAAATGTATCACAAATGCAAGATAAGATATGTAGAAAGGAGAAGTATTTCTTTCTTTTTACAGATGCTTTTCGTGCGACTTAATATTGTTCTAGTATTCTTTTAGGAATGAGATGCAAAAACACATGGATGGATGTGTGAAAGTAATGCACTAAGAAGCACTAATAGGAGTCTTGAATCAATTAGAATAAGCATGATATTTAAATCAGGATACAAAAAAAAAATAGGGGTAATGTTAGCAGCCTTGTTGATTTTGAAAAGCATCTAGATGGTCTATGAAGACCCAAGTGAAATAGGTATTTTTTCCCCTTCTTCGAAGGAAATTTCTTTTGTCATTGGCAATGAGCTCAACTCTTTGGAATCTTCAAAGGGCTTTCTAGTTATTATTAAGGACCTTTCTAAATTTTTTAAAGAATGCTGCAGATATTTTTTTTGTCTAATTAGGGGTTTCGTTTCCAATATTTCTTTGTGGTGTTTAGCAGCTTTGAAGATGATTGGTGCAATCTCTCTTGTTGGAATCTTCATGATCCTCTCTTCTAGTTTTTTGTCCCTCACATAATGGGTTTGGTGCTATTTTTTGGTGGATAGGGCTTTAGCTTTAGTGCTCTTTGGTCTTTGTAGTTTTTCTTTGGGGATAGTTTCTCTCATGGGCCCTTCGTACTTCAATGGTTTATTTTTGGCTTTTTTAGATTTGGGTTGCTTTTCATTTTCCCTCTTGGGAGTTTGTATCCTAGAACTTTTTTCTTCCTTTCCATATATCAAAAGGTTTGTTTCTTGTAAAATAAAATAAAAATAATAATAACCACCAAAACGATAGCTTACCACTCGATCATTCGCATTTGCACATTAAAATTCAGCAATGTGAATTTTTCTTTGAGACCAAGCCCTTGAGAGTTAAACATGTAACCCATGTGCTACGGGGAAGTATAGTCATTAGTGGGGTAGAGTGTTGAATTGTTAGAACTTTCTAACCCACCAGAGGTTAAAAATAGGGAATGTGGTTGTTTTATCAGTTTCATGTTGTTGTTTACATTCTTTATGAACTCTTTCAACTGGTTGCAGGTGTAATCGAAAAAGTCGACTACAAATATGGCTGAGAAAATGAAGGGGAGGAAGGAGGAGGTGGTCACGAGAGAGTACACAATCAACCTACACAAGCGCCCTCAGTGGCTACGACGGAAGGCTGCAACTTGACCTTTTCTTTATTTGACCTTTTCTTTTTCATTGAATCTGCAGTTGTTGATTGCTGCAACTTGGAGAATAGAGGGCTGCTTGAGATTGATTACTTATGCGACCTTGTATATAATGGTTCCACAAAGCAAACCACACCATGGTTAGGTATGTGTGTCTGTTCTTTTTTAATATTTACTTTCTCAAGCTTGTGTGTTTGGATTTATATGAAATTACTTTGAATTTGAATGGTTAGGTGTAGGCCAAAACCTTGTATTCCAAGAGAAAATCGTTTTCCCATTCACTGAAAGCGTTAGAAGCTTGCTTGAGCCTTATCAATTGATTTTCAATTTCTATCTCTCTATATGTTTCCGTTGTTTGATTTTGTGACATCTAATAAGCTTGTTTGTCTTTAGATTACCACTGCCACATGTTCCTATTGATGGTTATGGTGACTCTATCTTGTGTTTTTTCGATAGGGATAGTAGGTAAAAGTTCATTAGATGGCACTCATCTTCTTTTCCAAGTTATTTTCATTGTTTCTCTGTAAACTAATTTTGTTTTGATTGCAGGCCAGCAGGTGATATACGACTAAAATTGCAATTTCCCAATTCTAATTCAACAGTAAGTTCCCATCTTGTATTGGTTTATTCATGTTCCTTTAGTGTTCTGTCTTCATTTTCTTTTTAATTCATCGGGTTGGTCCAAGTTATACACTTTAATTATTCTAATGCCAATTATGATTTACATGCAATATTTGTTTTGGATAACACAAGAGGCTAAAGAGAGATGTCAAAAACATTGGCATTGCCTTGGAGAATGCCTTGGCCTTCCACAATATACCTTCACTTGATCTGCATTCAAATATACATCTTTTATATATTAGTTCTGAATGCATAAATTGTAGTTTGGCTTGAAATGAGTTTTATGTGGAACAACATGCTGACCATTGAAGATTACTATGGCTATTTGTTCCCGGTAATATTCATCGCCAAGAGACATTCTGTGATGCGCTAGGGGCTGGAAAGATCACAGCCCTAGTTAAGAAGGGTATAAAAATAACACACAAATCGAAGCTAAATCATAGCTACATAAAAGACATTGAGTTACAACTAACAAATAATAATCAAACTTATTTATGGCAATTAGGATATGGTCGTGCATACAAATAAATCATTTGCTCAGAAAAGGAGTCCATAACAAGTGAACTGAGAGGAATTTGTATCTTGAAAGAACTATAATTTTGTTTGAAAAAGAAAAATAGTATTAATTAGGGTCCTATATTATTTGGAGATGATGCTGCATATACATTTATTTTGGAAGATGAGTTAATTTTGTGAGAAAAATGTTTATTTGTAGATTGTGTTTGGTTGTAAGCCTTCCTAATCATTGCTTCTATCATGGAAAGCAATGGCTTTGTGCTTCTAGGTGACAAGAATCTTGCTTGCTTGGAAACTAGAGGCACAAAAGAGTTGTTGCTTTTAGTAAAGCAACATGCACTTGGATGGATGAGGTTTTCAGTTCCTTGAGTCTAAATGGATATAAATATATTTGTTTTTTATGTTTTAACAAAAGTATCTTGAAATATTGAAGTTTTCCTTTCATATGCGAATTGTGGCATCCTCGATCATTATTTATTTTTGAAGGTCATTTAATGCAATTCGGTTGTTTCTCCATTGAAGGATCATTACCTCCATACTTTGAACTTGGATCATGTTGCTTGATAGCCGACATACTTGAGATGGTAATTTTCTGAAATTCATTGATTATGCCTGTTTTATGTTGAATATATATCATCCTTCTGTTACCGGAATAGACATGCTTTGAGATACTTGACTCAATTCTCAAATAGGGCAATCTTTCATGAGCTAAGAGTGATAATAATCTGTTTTATTTAGTGTGGCATTTTAGGCTAATTGTGGTTGAGGGTTTTTTCCCTCCTCTTTAGAACCTTTTCTTTTCTTTTTTCTCTTTTGAGAATATTTTTTCTTCTGTTTAACAAATTTCGGGAAGAAAAAAATGTTCGCTCTGTATTTTTTGGATCCTTTCATGTCCAAACTATTTTCATAGAAGAAAAAAAATCTCTCTTGTATATTCTTTACCTAATTAAAAAAAAATCATCATCCTTCTTTCTTAATGCTCTTGTAAGATGTTATTAAATCTAAACCTTGTTAACATGTTGAAGTGAAGGGGGCGTTGTGTGTGACTTTATCTTTAGATTTTGCATCATGAGAGTTCTCCTTTTCCCGTTGCTATCAAGGAGTTGTCATCACCGTGTTCTTTGAAATGGAAGTTCAAATGGTTCTATGAAGAGAATCTACTTAATTTCATTGCATTGACGAAGGCAATCCACCTGGGAAGTAAGGAGTTCCCCTTGCCTCTTAGATATTTATCATGATTGGAGAGGCTAGAGAAAAAGGTTCATATTATTGATACTTGAGTTTTGGTGTTAGCTTCAAATGATGTATTGAACATATTTATTATCTGACTCGTATTATTGATACTTGAGCTTTGGTGTTAGCTTCAAATGATGTATTGAACATGTCATGTTATTGTCAAGTGAAGTGAAGGTTGTGTTCTGGGTTTAGAAGTGCATATTTCTGTTTTTTCAGGTACCCAACAATTTTTGGATAGTTATAATTACGTCGTTATGCTGTCGGATTTTTGGTAAAACAAACTTGGTTACAGGGTAAAATTTAGTAATGCCCTCTATATTATGTTGAATTTTGGAGGTATTACAATTGGCTACTATTGTGTAAATGCAGGTTGCAATGCAGGGGTAAAAACCAACGTGAGTTTTTTTTTTTTTTCCAAATATGTATTGTTGACGGTTAAAAAACGTCATAACAAACACCATAATTGACATATATTAACCGTCAATGAAAATACACAATTTGACAATTTAATACGATAACTTGACGGCTAATAAACGTCAATAAAATGATATATTGATAACTCATAAGCGTCAATAAATATATATATTGACATTTTCGATCCTATAATTGACATTGAAAAAATGTCAACATAAATTTATATTGACGGTTTATAAATATCAATAAATATGACAACATTGACGCTTTATGGATATCATTGACGAATAAAACATGTCAATAATACGATTTGTTGATGGCTAGTAAACGTCAACAAAGGTGCCTACGTTGACGCTTTATGAATATCATTGACGGATAAAACATGTCAATAATATCTTTGTTGATAGCTTATAAACGTCAACAAAGTCATCTTTGTTGACGTCCTATAAGCGTCAATGAAAACAGTAATATTGACGCTTTAGTTTTATTGATACCACTTCAGTTGACTTCTAAAAAACGTCAATGAAAGTGATAGTTGATACTGTTTAGCCGTCAACAAAGGCCAAATTTGTAGTAGTGTGGTCACTCTCACCCATACAAATCTAAGGACAATCCCTCATGAAAAGAAGTTCATAACATACTCAGGATTAAGATCAAGTTACCTAGGTCGTCCTATTGAAATAGAAACCTAAACTAGTCAACGACGTTACATCTAGTGGTTACTATTTCCCGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTTCATGGATGCTTTGGATCAATGCATCTGTATCGAATACAAAGCGGGTCATATCACATAGTGTCACCAAGATAAGGTACCCAGCCTTATCCTTATACTATAGATCTTTTAGGTTGTTATTTGAACATTGATCCCCGTATGTCCCCACATACTAGTCCAATTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTAATTAATGCAAACTCGATTATTCAATAACAAATTACTGAATCTCTCAAATAACACTTTATTGAGGTTAATTAATTTGTTTCATTTACTATCTATGAGTTTTAGGACATAAAACCCAACACCACCGTCAACCTCTAACTACGGCCACCGTCGACCTCCGACTACCGGCCGCTGCCACCATTGACCTCTGACTATCGGCCACCGCCGACCTTCGTCGACCGATTGCCACCTTCGACTACCGACCGCTGCCGACCTCCACCGACCAACCGCCACCAGCGACCTTTGACTTAATTTTAATGTATGTTATATATAATTTTTATATTATATGTACCAAAAAAAATTTCAATTAAAACTCAAGAAATGAGAAACAGTTATCAAACACATATTTGTTTCTGTTTCTTTTTTTAGAGAAACAAGAAACATAAATAGTTATCAAACATGTTTCTGTTTTTCCTTAAAAACAAGAAACAATAAACATGAAACAATAAACGAGAAACGGGAAACGAGAACGTTATCAAACAAGCCCTTAGAATCTCAAGAGTGCTACAATCTCTTCTATTTCCTATTTTCTACAACTATAAAAGACTATCTTTCACTCATTTTTAACAAGAATTTGAGGTTCATCTTTGGTGAAGTATTCCAAATCTTCATAGCAATGTTGTTTTTAGTGATTTTGAACATTGGTGAAGTATTCATGAAAGGTAATATGTTTAAAAATTACATTAGTTGTTTTTCACGTTTTGAATAACTATACATATTTAAAATTTGCAATTTTTTTTTTAATTGTGTTTTCTTTTCCACATTTTAAATATAATTGATGCTTAAAATTTTACCAATGTCATTTGTTATTATTATTATTTTATGATAAGATTATTATTATTTTTGTAGTTTGAATGCCTATACATATTGTTGAATGAGAAATTTCGGCCAATCACAAATTGCCATGTCATTAATTTGAATTAATAAATTTGGGACCAATTACAAATTTACATGTGTCCCTAAATTAAATTAATAGACATTAAATTCGGCAAATCAAACAATGCCACTTGTCTATTATTGATACATCGGATGACATAAGCCAAGTCCAATCAAGTTATGCCACGTGGCAATTGGACCCGAAACTAATGTAACCCGAGATATTGAAGAAATTGGGCTAAAATAATCCAACCTTATAGAAAAGGGTTGGATTAAAGCCCAAATGTAGCCCAAGCCCAAAAGTTGGGCCCAAAATCAACCAAGCCCAAGCCCATGTGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTTTGGGCATTCAGATTCAGAGACAGAGTCAGAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCAAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGGTTTGAAGACTAGAAGACTCTAAGAAGAGATCAACAAGCCAACCGACTGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAATCGACCGATCAAGAGGATCAACAAGTCAGCAGGTCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACATATCATCAAGCCAACAGGCCGATCCAAAAGAACGTCAAGCCAGCATGCCGATCATCCAAGAAGATTAATAAGTCACAACAGGCCGATCCAAAAGATCATTAAGCCAATAGGCCGATCATCCAAAAAGATCAACAAGCCAACAGGTCGATCTAAGAGATCATCAAACCAATAAGTCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGCTAAAGGCCAAAGTTTATATATTTGTGAGAAAGAATCAGTGGATAAATATTAGAGATTGTACACTTCTACATACAAATTCAATAAAATCAAGTTCATTTCCACGAATTAAATTTCCTTTGTCGAAATCTCGTGTGAACAAATTGGCACGCCCAGTGGGACAGTCTCTACCTCTCATCTCTTTTTCTCACAAAGAAATCATGACTTCTGAAGAAGCTTCTTCAAAGATTCCTGCTTCAAGCAACTTCTATGTGGGGTCAATTACTCGCAGTCGCTCCAAGAAAACCCAACACGAAGACAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACACATGACAAAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACCAAATGAAACATCGAGTCTTGACGTAATGTCTGTTATGATGACTGATGGAGGAACTAGTGAAGAATGGATGACTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAAATGGTTGAAGAGAAAGACAACGAAATTGCCTTTCTCAAAAGCCAAATGGACAGTCGGGATGCTGTTGAATCAAGTCAGACCCCTGCCATCAAAGACAAGGGAAAGACCACTATACAAGATCAGTCACAACACTCCGCTTCTATTGCTTCACTGTCTGTACAACAACTTCAGGATATGATCATGAATTCTATCAGAGCTCAATATGGTGGACCGACTCAGAACTCTCTCTTGTATTCCAAGCCGTATACCAAGAGAATCGACAATCTGAGAATGCCTAACGGATACCAGCCACCAAAGTTTCAACAATTCGATGGGAAGGGCAATCCCAAGCAACACGTTGCTCATTTCGTCGAGACATGTGAAAACGCTGGTACTAAAGGAGACCTACTGGTCAAGCAGTTCGTACGAACACTGAAGGGAAATGCTTTCGACTGGTATACCGACCTTGAGCCTGAGACTATTGATAATTGGGAACAACTTGAGAAGGAGTTCCTTAACCGTTTCTACAGCACAAGGCGAACCGTCAGCATGATAGAGCTCACCAATGCCAAACAACGAAAAGATGAACCAGTTGTTGACTACATCAATCGTTGGAGAGCTCTAAGCCTAGACTGCAAGGACCGACTCACCGAAGTGTCTTCTGTTGAAATGTGCATCCAAGGCATGCATTGGGGACTTCTATATTCTACAAGGAATAAAACCTCGTACTTTCGAAGAATTAGCAACACGCGCCCACGATATGGAGTTAAGTATTGCTAGCCGAGGAGATGAAGACCTTCTACTCTCTAATATGAAGAAAGACGAAGAGAACGTTGAAGCAACTATAGAAGAATCTATGGTTGTAAATACAACTCCTCCCGAGTTGTCTTCTAAAGAAAAACACAAGAAGATTGAAAAGCAACAAGGAAATGAAAGGCGTCGCTTGACTTTGAAGGAAAGACAGAAAAAGGTCTATCCTTTTCCTAATTCCGACGTCCCTAACATGTTAGAACAACTACTGAAAACGCGGTTGATAGAACTTCCCAAGTGCAAACGACCAGAAGAGATTGAAAAGGTCGATGATCCCAACTACTGTAAGTATCATCGAGTTATCAATCATCCGGTAGAAAAATGTTTTGTCCTGAAAGAGCTAATTCTGAGGTTAGCTAAAGAAGGAAAAATCGAGTTGGATCTTGAGGAAGTAGCTCAATCAAATCATGCTACGACAACAACAAACACTTGCAATCAAATGTGTTTTGATTCACTTCACAGTCAAGAGATGCACCTACTTCAATTTGGAACCTTGGAGCCTATAGCTATTTGGTTTCACCATGAGGTATCAGGAGACAAATCTCAAGATACAGTCAATCTTATCAGCGATAAATGTAAAGGAAGTAGTGTCATGACTCGTCAGAAGAAACAAGGACAACATCTTGTTCAGAAAGGATGTTGCTCATCCAAAAGAAAGAATAGACATCGAAGACAGAAGAATTCAAGGAAACCTAAACTTGAGAAAGAAAGAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTCACAGAATCATCCTCGAGAAATTTTCGTCTCATCAAGAAAATGGAAGAAAATTTTGCAAGTTCATGTTATATCAATGTAGAAGAAGATGGTGCATTGAAGGAAATCAAGCAAAGGACTTCTGTCTTTAATCGCATTGAGCCTTCAACTACTAGACTTTCGGTCTTCCAAAGAATAAGTATGGCTATAGCAGGAGAAGAAGATCAAAGTTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAATAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACATGAAAAAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACGATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCCTTGAAGGTGAAACCAAATCTTATCATTTTGACAAATCCTACAAATGAAGGGTCTGATCAAGACTATGATAGAGAAAAAGAAATTTAAAATGTATTGCTCCTTATCGCATGAGCATAAACTACATGATGCTCCTGGCTCACACGAGCTTAAAAGGTGAATGCGAAAAAAAAAAAAAAAAAACTTGAACTATGTTATGACTTGATCCCTTTCCTTCAAGGGTACGTAGGCAGCTTAAAAAAAAAAACTTTAAGTTCAGTCCTTGCAAACAAAAAAAAAGTGTCACAAATATAGAAGCATGACAATACAAGTCAAAGATGCTTACCCTTACTAGGGGCAACACAGTAAATTGAAGACGTACATTGCTATGAATGGAATGCTACGAATTAAATGCATAAAAGAAGGCTCCGTTCTTTCAAGTTCGACGATTCGCTCGCTCCAAGTCCGGCGTCTCGCCTAGTTCGGTGTCTCGCTCCTTCTATGTTTGCATTCCACACACTTCAAGTTCGGTGTTTCGCTCCTTCAAAGTTTGGAGTCTCACCCCCTTCAAGTTTGGCGTCCTACTTCCTCTAAGTTTGCATTCTCCATGCTTCAAGTTGGGTGTTTCGCTCGCTCAAAGTTCGACGTCTCACCCTCTCCACGTTCGGCGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTTGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGACAGTTGAAAACTTTGCTTCACTACAAATGTTGCCGGTTGAAGACTTCACTATCACTTCATCTTCAAAATTTGGCGGTCTACATCGCTTCATTTTCAAAGGTTGACCATTGACAACTTTGCTTCATCTCCAAAAGATAGCGGTGGAAGGATTCGTTGTCGCTTCATCTTCAAAAGTTGACAGTTGACGACTTCGCTTCGTTTTCAAAAGTTGGTAGTTGAGAGCCTTGCTCCATCTTCAAAGATTGACAGTCAACAGCTTTGTTTCATCTTCAAAGGTTGACAGTTGAATGCTTTGCTTTCGCTTCATCCTCAAAAGTTGACGATTGGTGGCCCCGCATCTTCTTCAAAAGTTGACGGTTGGCGACCTCGCGCCTTCTTCAAAGTTGACGGCTGACAACTTCACTTCAAAGTTGGCGGTTGGCGACTTTCACTTCAGCTTCAAAAGTTGACGATTAAAGTCTTCGCATTAGAACATCTGCAAAGATGAACAACTTTAACGTTGACTTTATCTTGAAAGTGTCTAGATTGGATGATGCATCTTAGCTGCAAGTTAAAAAAAAAAAAATGCTTGATATCAAGCAACAAAAGAAAAAGAGAAAGAAAGACAATAAAGGTGTTGTTAAAAAAATGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACGGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCAAGTCTGATGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCCAGTGACTACCCCTGCAGGTTACTCAGATCACCTAATAAAATAGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCAAGTCCGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGAAATCACTGCAAGTGAATTTGGAAACGACTGTTGCACGATGCTTACACATTCAAGTAAGAAAGAAACAAATTGCAATAATATATGTGCCCAAAAAAAAAAAAAAAAGAAAATCTATGGCACAATCAAAGTGGTTCATATGCATGTTCAAAAAAAAAAAAAAAAAAAGTTTTAATATGTATGTACCTTCCAAATGGTGGACAAAGATTAATGTTGTGCCCCAGAAGATCGTTAAATAACTTTGTTAGTTCCGAATGCTACAAAGAAAGGAAGGTAATTAGCGGCAAAAGAAAAAAAAAAATTGGCATTCAAAGAAAGGAAAAAAAAAAAACAAACAAAATGGGCCCTGCACACATGAGGCAGCAAATTTTTGGCCTTTGATTTGTTAGGTATAATATGGAAATTTGAAGCCCATATGGTGGTTTGTTCATTTATTTATTTTGCCTATTATAAAAAAAATCATGATTAAAAAAAAAGAAATCGGCAAAGATCAGAACCCAATCACATGTGTGTAGTATGTATGTGTATCCTGAAGGCTTGAAGAAAAAAGAAACATTCTTTTCTCTATCTCATAGCATATCTTCTTCCTCCAATACGTTGGTCGGCGGCAACAAGTTTCTGGCATCCAAACTTTTAGCCTTCAGCAGATCCACATGAAGCCGATAGAAATATTAAGCGGCGTCAAAATCTTCTTTCTTGATAAAATTCCGGCACCCACCAGCAATGACTTGACGATTCTCAACACCCGGTAAAGCACAAGAGACTTCGACGTGCAACAAACCCATTTGGACTCTCGCGTTTTCAGCAACTAGCAGCGTTGGGTCTTTGTGTTCGCCGTCTTCACGGCTTCTCCCTTCCTTTGGTCTCCGTCTAACGCTAGTGGCAAGTTCGGATCGACTACAAACAGCGGCGACGACGTATTCACGCTACGGACTCGCTGCAGCCACACCTTTGAAGGATATTTCCATTCAACTTGGTTGA

mRNA sequence

ATGCGTTCATCTTCTCCAACTCTTTCTTCTTGCGATCGAACTTCTGCTAGCCTCTGTTTTCACTACCGCTGGTTGCGTTTCTTTTTCGCCGTCGTTGACAACTGGTACTTTAATGATCACAAAGTTGTTGATTGCTGCAACTTGGAGAATAGAGGGCTGCTTGAGATTGATTACTTATGCGACCTTGTATATAATGGTTCCACAAAGCAAACCACACCATGGTTAGGCCAGCAGATTTTGCATCATGAGAGTTCTCCTTTTCCCGTTGCTATCAAGGAGTTGTCATCACCGTGTTCTTTGAAATGGAAGTTCAAATGGTTCTATGAAGAGAATCTACTTAATTTCATTGCATTGACGAAGGCAATCCACCTGGGAAGTTGCAATGCAGGGGTAAAAACCAACATTCAGAGACAGAGTCAGAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCAAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGTCGCTCCAAGAAAACCCAACACGAAGACAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACACATGACAAAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACCAAATGAAACATCGAGTCTTGACGTAATGTCTGTTATGATGACTGATGGAGGAACTAGTGAAGAATGGATGACTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAAATGGTTGAAGAGAAAGACAACGAAATTGCCTTTCTCAAAAGCCAAATGGACAGTCGGGATGCTGTTGAATCAAGAGACAAATCTCAAGATACAGTCAATCTTATCAGCGATAAATGTAAAGGAAGTAGTGTCATGACTCGTCAGAAGAAACAAGGACAACATCTTGTTCAGAAAGGATGTTGCTCATCCAAAAGAAAGAATAGACATCGAAGACAGAAGAATTCAAGGAAACCTAAACTTGAGAAAGAAAGAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTCACAGAATCATCCTCGAGAAATTTTCGTCTCATCAAGAAAATGGAAGAAAATTTTGCAAGTTCATGTTATATCAATGTAGAAGAAGATGGTGCATTGAAGGAAATCAAGCAAAGGACTTCTGTCTTTAATCGCATTGAGCCTTCAACTACTAGACTTTCGGTCTTCCAAAGAATAAGTATGGCTATAGCAGGAGAAGAAGATCAAAGTTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAATAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACATGAAAAAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACGATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCCTTGAAGTTTGCATTCTCCATGCTTCAAGTTGGGTGTTTCGCTCGCTCAAAGTTCGACGTCTCACCCTCTCCACGTTCGGCGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTTGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGGCTTCGAGTGCATCACTGAAGGCAAGTCTGATGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGAGTGCATCACTGAAGGCAAGTCCGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGAAATCACTGCAAGTGAATTTGGAAACGACTGTTGCACGATGCTTACACATTCAACACAAGAGACTTCGACGTGCAACAAACCCATTTGGACTCTCGCGTTTTCAGCAACTAGCAGCGTTGGGTCTTTGTGTTCGCCGTCTTCACGGCTTCTCCCTTCCTTTGGTCTCCGTCTAACGCTAGTGGCAAGTTCGGATCGACTACAAACAGCGGCGACGACGTATTCACGCTACGGACTCGCTGCAGCCACACCTTTGAAGGATATTTCCATTCAACTTGGTTGA

Coding sequence (CDS)

ATGCGTTCATCTTCTCCAACTCTTTCTTCTTGCGATCGAACTTCTGCTAGCCTCTGTTTTCACTACCGCTGGTTGCGTTTCTTTTTCGCCGTCGTTGACAACTGGTACTTTAATGATCACAAAGTTGTTGATTGCTGCAACTTGGAGAATAGAGGGCTGCTTGAGATTGATTACTTATGCGACCTTGTATATAATGGTTCCACAAAGCAAACCACACCATGGTTAGGCCAGCAGATTTTGCATCATGAGAGTTCTCCTTTTCCCGTTGCTATCAAGGAGTTGTCATCACCGTGTTCTTTGAAATGGAAGTTCAAATGGTTCTATGAAGAGAATCTACTTAATTTCATTGCATTGACGAAGGCAATCCACCTGGGAAGTTGCAATGCAGGGGTAAAAACCAACATTCAGAGACAGAGTCAGAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCAAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGTCGCTCCAAGAAAACCCAACACGAAGACAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACACATGACAAAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACCAAATGAAACATCGAGTCTTGACGTAATGTCTGTTATGATGACTGATGGAGGAACTAGTGAAGAATGGATGACTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAAATGGTTGAAGAGAAAGACAACGAAATTGCCTTTCTCAAAAGCCAAATGGACAGTCGGGATGCTGTTGAATCAAGAGACAAATCTCAAGATACAGTCAATCTTATCAGCGATAAATGTAAAGGAAGTAGTGTCATGACTCGTCAGAAGAAACAAGGACAACATCTTGTTCAGAAAGGATGTTGCTCATCCAAAAGAAAGAATAGACATCGAAGACAGAAGAATTCAAGGAAACCTAAACTTGAGAAAGAAAGAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTCACAGAATCATCCTCGAGAAATTTTCGTCTCATCAAGAAAATGGAAGAAAATTTTGCAAGTTCATGTTATATCAATGTAGAAGAAGATGGTGCATTGAAGGAAATCAAGCAAAGGACTTCTGTCTTTAATCGCATTGAGCCTTCAACTACTAGACTTTCGGTCTTCCAAAGAATAAGTATGGCTATAGCAGGAGAAGAAGATCAAAGTTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAATAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACATGAAAAAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACGATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCCTTGAAGTTTGCATTCTCCATGCTTCAAGTTGGGTGTTTCGCTCGCTCAAAGTTCGACGTCTCACCCTCTCCACGTTCGGCGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTTGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGGCTTCGAGTGCATCACTGAAGGCAAGTCTGATGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGAGTGCATCACTGAAGGCAAGTCCGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGAAATCACTGCAAGTGAATTTGGAAACGACTGTTGCACGATGCTTACACATTCAACACAAGAGACTTCGACGTGCAACAAACCCATTTGGACTCTCGCGTTTTCAGCAACTAGCAGCGTTGGGTCTTTGTGTTCGCCGTCTTCACGGCTTCTCCCTTCCTTTGGTCTCCGTCTAACGCTAGTGGCAAGTTCGGATCGACTACAAACAGCGGCGACGACGTATTCACGCTACGGACTCGCTGCAGCCACACCTTTGAAGGATATTTCCATTCAACTTGGTTGA

Protein sequence

MRSSSPTLSSCDRTSASLCFHYRWLRFFFAVVDNWYFNDHKVVDCCNLENRGLLEIDYLCDLVYNGSTKQTTPWLGQQILHHESSPFPVAIKELSSPCSLKWKFKWFYEENLLNFIALTKAIHLGSCNAGVKTNIQRQSQRTQSLEHSARVQSRQKPKSQENSEGFEIQNSKDSRLRSRSKKTQHEDNQTLVIANKMLRHMTKSAQLEIATAENLMLGKFISLSQQPNETSSLDVMSVMMTDGGTSEEWMTEVEKKISMLLKMVEEKDNEIAFLKSQMDSRDAVESRDKSQDTVNLISDKCKGSSVMTRQKKQGQHLVQKGCCSSKRKNRHRRQKNSRKPKLEKERNQDPSQHRQLVTFTESSSRNFRLIKKMEENFASSCYINVEEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSITVFDRLKVTSDQHEKKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSLKFAFSMLQVGCFARSKFDVSPSPRSAIAPFKFGLSLVPSLIPRFTFKGWQLKASSASLKASLMTTPAGYSDHPIKWGLECITEGKSGDYPCRLLRSPNEIGDWSSRSEITASEFGNDCCTMLTHSTQETSTCNKPIWTLAFSATSSVGSLCSPSSRLLPSFGLRLTLVASSDRLQTAATTYSRYGLAAATPLKDISIQLG

Homology

[Close]

BLAST of Spg010746 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 3.3e-31
Identity = 104/218 (47.71%), Postives = 133/218 (61.01%), Query Frame = 0


Query: 304 SSVMTRQKKQGQHLVQKGCCSSKRKNRHRRQKNSRKPKLEKERNQDPSQHRQLVTFTESS 363
           SSV T+     +H   KG  S K+K   RR K   KPK  K +++D  Q RQ +T  E  
Sbjct: 31  SSVQTKSHFHQKH--SKGNISHKKKG--RRNKKMWKPKPIKGKDEDCLQPRQSITLAEFF 90

Query: 364 SRNFRLIKKMEENFASSC-----------YINVEEDGALKEIKQRTSVFNRIEPSTTRLS 423
            R+F      E    ++C           Y + EE     EIKQRTSVF+RI+P TTR S
Sbjct: 91  PRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSS 150

Query: 424 VFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSITVFDRLKVTSDQHEKKVD 483
           VFQR+SMA   EE+Q  TS   R S F+RLS+STS+K RPS + FDRLK+T+DQ ++++ 
Sbjct: 151 VFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMK 210

Query: 484 NSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSL 511
           + + K F E NDD+K+HS  PSRMKRK SV INTEGSL
Sbjct: 211 SLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg010746 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-30
Identity = 101/218 (46.33%), Postives = 133/218 (61.01%), Query Frame = 0


Query: 304 SSVMTRQKKQGQHLVQKGCCSSKRKNRHRRQKNSRKPKLEKERNQDPSQHRQLVTFTESS 363
           +SV T+     +H   KG  S K+K   RR K   KPK  K + +D  Q R+ +T  E  
Sbjct: 448 NSVQTKSHFHQKH--SKGNISHKKKG--RRNKKMWKPKPIKGKEEDFLQPRRSITLAEFL 507

Query: 364 SRNFRLIKKMEENFASSC-----------YINVEEDGALKEIKQRTSVFNRIEPSTTRLS 423
           SR+F      E    ++C           Y + EE     EIKQRTSVF+RI+P TTR S
Sbjct: 508 SRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSS 567

Query: 424 VFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSITVFDRLKVTSDQHEKKVD 483
           VFQR+SMA   E++Q  TS   R S F+RLS+STS+K RPS + FDRLK+T+DQ ++++ 
Sbjct: 568 VFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMK 627

Query: 484 NSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSL 511
           + + K F E NDD+K+H+  PSRMKRK SV INTEGSL
Sbjct: 628 SLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg010746 vs. NCBI nr
Match: KAA0052018.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-30
Identity = 105/237 (44.30%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 286 SRDKSQDTVNLISDK-CKGSSVMTRQKKQGQHLVQKGCCSSKRKNRHRRQKNSRKPKLEK 345
           S D+ ++ ++++  K  + SSV T      +H   KG  S K+K   RR K   KPK  K
Sbjct: 366 SEDEGEEWIDVVHKKERQTSSVQTNSHFHQKH--SKGNISHKKKG--RRNKKMWKPKPIK 425

Query: 346 ERNQDPSQHRQLVTFTESSSRNFRLIKKMEENFASSC-----------YINVEEDGALKE 405
            +++D  Q RQ +T  E   R+F      E    ++C           Y + EE     E
Sbjct: 426 GKDEDFLQPRQSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNE 485

Query: 406 IKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPS 465
           IKQRTSVF+RI+P TTR SVFQR+SMA   EE+Q  TS   R S F+RLS+STS+K RPS
Sbjct: 486 IKQRTSVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPS 545

Query: 466 ITVFDRLKVTSDQHEKKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSL 511
            + FDRLK+T+DQ ++++   + K F E NDD+K+HS  PS MKRK SV INT+GSL
Sbjct: 546 TSAFDRLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRVPSHMKRKLSVDINTKGSL 598

[Close]

BLAST of Spg010746 vs. NCBI nr
Match: TYK27425.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 4.8e-30
Identity = 105/242 (43.39%), Postives = 143/242 (59.09%), Query Frame = 0


Query: 290 SQDTVNLISDKCKGSSVMTRQKKQGQHLVQ----------KGCCSSKRKNRHRRQKNSRK 349
           SQ+    I D+ K   V+T +K++    +Q          KG    K+K   RR K  RK
Sbjct: 252 SQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKKKG--RRNKKMRK 311

Query: 350 PKLEKERNQDPSQHRQLVTFTESSSRNFRLIKKMEENFASSCY-----------INVEED 409
           PK  K +++D  Q RQ +T TE   R F      E    ++C+           ++ +E 
Sbjct: 312 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEV 371

Query: 410 GALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSR 469
               EIK+RTS+F+RI+PSTTR SVFQR+SMA   EE+Q  TS  TR S F+RLS+STS+
Sbjct: 372 DYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTSK 431

Query: 470 KCRPSITVFDRLKVTSDQHEKKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEG 511
           K RPS +VF+RLK+T+DQ +++  + + K F E NDD+K+HS  PS MKR  SV INTEG
Sbjct: 432 KDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTEG 491

[Close]

BLAST of Spg010746 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 4.8e-30
Identity = 97/202 (48.02%), Postives = 126/202 (62.38%), Query Frame = 0


Query: 320 KGCCSSKRKNRHRRQKNSRKPKLEKERNQDPSQHRQLVTFTESSSRNFRLIKKMEENFAS 379
           KG  S K+K   RR K   KPK  K + +D  Q R+ +T  E  SR+F      E    +
Sbjct: 462 KGNISHKKKG--RRNKKMWKPKPIKGKEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVT 521

Query: 380 SC-----------YINVEEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQS 439
           +C           Y + EE     EIKQRTSVF+RI+P TTR SVFQR+SMA   E++Q 
Sbjct: 522 ACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQC 581

Query: 440 LTSAITRHSVFQRLSVSTSRKCRPSITVFDRLKVTSDQHEKKVDNSEVKLFDEINDDNKL 499
            TS   R S F+RLS+STS+K RPS + FDRLK+T+DQ ++++ + + K F E NDD+K+
Sbjct: 582 PTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKI 641

Query: 500 HSTTPSRMKRKFSVLINTEGSL 511
           H+  PSRMKRK SV INTEGSL
Sbjct: 642 HNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg010746 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-31
Identity = 104/218 (47.71%), Postives = 133/218 (61.01%), Query Frame = 0


Query: 304 SSVMTRQKKQGQHLVQKGCCSSKRKNRHRRQKNSRKPKLEKERNQDPSQHRQLVTFTESS 363
           SSV T+     +H   KG  S K+K   RR K   KPK  K +++D  Q RQ +T  E  
Sbjct: 31  SSVQTKSHFHQKH--SKGNISHKKKG--RRNKKMWKPKPIKGKDEDCLQPRQSITLAEFF 90

Query: 364 SRNFRLIKKMEENFASSC-----------YINVEEDGALKEIKQRTSVFNRIEPSTTRLS 423
            R+F      E    ++C           Y + EE     EIKQRTSVF+RI+P TTR S
Sbjct: 91  PRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSS 150

Query: 424 VFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSITVFDRLKVTSDQHEKKVD 483
           VFQR+SMA   EE+Q  TS   R S F+RLS+STS+K RPS + FDRLK+T+DQ ++++ 
Sbjct: 151 VFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMK 210

Query: 484 NSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSL 511
           + + K F E NDD+K+HS  PSRMKRK SV INTEGSL
Sbjct: 211 SLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg010746 vs. ExPASy TrEMBL
Match: A0A5A7U9V3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G005100 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-30
Identity = 105/237 (44.30%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 286 SRDKSQDTVNLISDK-CKGSSVMTRQKKQGQHLVQKGCCSSKRKNRHRRQKNSRKPKLEK 345
           S D+ ++ ++++  K  + SSV T      +H   KG  S K+K   RR K   KPK  K
Sbjct: 366 SEDEGEEWIDVVHKKERQTSSVQTNSHFHQKH--SKGNISHKKKG--RRNKKMWKPKPIK 425

Query: 346 ERNQDPSQHRQLVTFTESSSRNFRLIKKMEENFASSC-----------YINVEEDGALKE 405
            +++D  Q RQ +T  E   R+F      E    ++C           Y + EE     E
Sbjct: 426 GKDEDFLQPRQSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNE 485

Query: 406 IKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPS 465
           IKQRTSVF+RI+P TTR SVFQR+SMA   EE+Q  TS   R S F+RLS+STS+K RPS
Sbjct: 486 IKQRTSVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPS 545

Query: 466 ITVFDRLKVTSDQHEKKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSL 511
            + FDRLK+T+DQ ++++   + K F E NDD+K+HS  PS MKRK SV INT+GSL
Sbjct: 546 TSAFDRLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRVPSHMKRKLSVDINTKGSL 598

[Close]

BLAST of Spg010746 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-30
Identity = 101/218 (46.33%), Postives = 133/218 (61.01%), Query Frame = 0


Query: 304 SSVMTRQKKQGQHLVQKGCCSSKRKNRHRRQKNSRKPKLEKERNQDPSQHRQLVTFTESS 363
           +SV T+     +H   KG  S K+K   RR K   KPK  K + +D  Q R+ +T  E  
Sbjct: 448 NSVQTKSHFHQKH--SKGNISHKKKG--RRNKKMWKPKPIKGKEEDFLQPRRSITLAEFL 507

Query: 364 SRNFRLIKKMEENFASSC-----------YINVEEDGALKEIKQRTSVFNRIEPSTTRLS 423
           SR+F      E    ++C           Y + EE     EIKQRTSVF+RI+P TTR S
Sbjct: 508 SRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSS 567

Query: 424 VFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSRKCRPSITVFDRLKVTSDQHEKKVD 483
           VFQR+SMA   E++Q  TS   R S F+RLS+STS+K RPS + FDRLK+T+DQ ++++ 
Sbjct: 568 VFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMK 627

Query: 484 NSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEGSL 511
           + + K F E NDD+K+H+  PSRMKRK SV INTEGSL
Sbjct: 628 SLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg010746 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.3e-30
Identity = 97/202 (48.02%), Postives = 126/202 (62.38%), Query Frame = 0


Query: 320 KGCCSSKRKNRHRRQKNSRKPKLEKERNQDPSQHRQLVTFTESSSRNFRLIKKMEENFAS 379
           KG  S K+K   RR K   KPK  K + +D  Q R+ +T  E  SR+F      E    +
Sbjct: 462 KGNISHKKKG--RRNKKMWKPKPIKGKEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVT 521

Query: 380 SC-----------YINVEEDGALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQS 439
           +C           Y + EE     EIKQRTSVF+RI+P TTR SVFQR+SMA   E++Q 
Sbjct: 522 ACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQC 581

Query: 440 LTSAITRHSVFQRLSVSTSRKCRPSITVFDRLKVTSDQHEKKVDNSEVKLFDEINDDNKL 499
            TS   R S F+RLS+STS+K RPS + FDRLK+T+DQ ++++ + + K F E NDD+K+
Sbjct: 582 PTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKI 641

Query: 500 HSTTPSRMKRKFSVLINTEGSL 511
           H+  PSRMKRK SV INTEGSL
Sbjct: 642 HNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg010746 vs. ExPASy TrEMBL
Match: A0A5D3DVW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001190 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.3e-30
Identity = 105/242 (43.39%), Postives = 143/242 (59.09%), Query Frame = 0


Query: 290 SQDTVNLISDKCKGSSVMTRQKKQGQHLVQ----------KGCCSSKRKNRHRRQKNSRK 349
           SQ+    I D+ K   V+T +K++    +Q          KG    K+K   RR K  RK
Sbjct: 252 SQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKKKG--RRNKKMRK 311

Query: 350 PKLEKERNQDPSQHRQLVTFTESSSRNFRLIKKMEENFASSCY-----------INVEED 409
           PK  K +++D  Q RQ +T TE   R F      E    ++C+           ++ +E 
Sbjct: 312 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEV 371

Query: 410 GALKEIKQRTSVFNRIEPSTTRLSVFQRISMAIAGEEDQSLTSAITRHSVFQRLSVSTSR 469
               EIK+RTS+F+RI+PSTTR SVFQR+SMA   EE+Q  TS  TR S F+RLS+STS+
Sbjct: 372 DYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTSK 431

Query: 470 KCRPSITVFDRLKVTSDQHEKKVDNSEVKLFDEINDDNKLHSTTPSRMKRKFSVLINTEG 511
           K RPS +VF+RLK+T+DQ +++  + + K F E NDD+K+HS  PS MKR  SV INTEG
Sbjct: 432 KDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTEG 491

The following BLAST results are available for this feature:

BLAST of Spg010746 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	3.3e-31	47.71	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK08944.1	3.7e-30	46.33	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0052018.1	3.7e-30	44.30	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK27425.1	4.8e-30	43.39	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	4.8e-30	48.02	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg010746 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010746 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	1.6e-31	47.71	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7U9V3	1.8e-30	44.30	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	1.8e-30	46.33	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UI09	2.3e-30	48.02	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DVW2	2.3e-30	43.39	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Spg010746 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 250..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 303..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 303..355
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..339

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010746.1	Spg010746.1	mRNA