Spg010584 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010584
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Enzymatic polyprotein
Location	scaffold5: 10403181 .. 10406404 (-)
RNA-Seq Expression	Spg010584
Synteny	Spg010584

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGGTTCGCACAGAACGGTTATCTCCAGGATATCGACCTCAAAAGGAATGTCGAATTCCTAAATGATAAATCCAAGCTTCTGACAGCTCTTGCTCAAACGACATCTGATGCAGACTTCCAGAGGATTCTTCAAATGGTAACTTCTTCACAAAGTGAATCTCCAGCTTCTTCTGCCAAAGGAGAAGAGAACGAGCCAGACTACGAACTGGACGATCCATGCCTCGACTCACAACCTATGTGAGCTCCGAATCAATTAAAATTTCTTGTTTCACAAAGAAACAAATGATGTTAAAAAAGGTTGCTTCATAAAGAAGTATAACCATCATAATTGTATATAAAAAAAAAAAAAAAAAGAGAAAAAGAAAAAAAAAAAGAAAAAAAAGAAAAAAAAGAAAAAAAAGTGTATATTCTTATCTTTGTAGATTTAATGGGTGTAAACTCCGTACATATTCTAGTTTACACTGTAAATTTTAGCTAGCAAAATATTTTGAAGCAGCAGCAGAGCAGTAAAAGCAAAAGATTTAGAGATTTTGAAGACGAAGATTATTGATAATTCTCCTAGTTCGTGAGGACCTAGTTTGGTGTTCCAGGCTGTAAGTCCCGAAGGCAGTAAGACCGTTGGTAAACCAGTAATTAGCCTAGGGTGATCACATCTCCAAAATTAGCTGGCAACATTCAAATTCCATGCATTTTGTCTATATTCCTTATATTCCCAAGACTTTGTCATTTTATCTTTTTTCATTTCCAACACTTTATCATTTTATCTTTTTCATTTCCAAGACTTACATTTCCAACTTTTGTCTTTAAATATTTCCAAGGTTTGTCTTTTATTTTTTTTGGTATTACCTAGATTTGTCTTTTACCTTTTAGATAATATTTGTATTTCCAACGAAACTATCAGGGGTCCTGTCCTGATTTTTTATCATAGCTTTAAATTTTCTGTATTCAATTTAATTTGAAGTTCGGGGTCTATAAAAGACTTCCAAGTTGTAATTCAAAGGCATCATTCGAAATCCTTCGAACTTCTTGCCATCCTCTTGTACTATCGATCCTGATTCTGATTTTCTCTTTGCGGTTAGCATCGAGCGATTGGTATCAGAGCCATACTCAATAAAATCATCTTCTTTTTCAATTGTTGATTTCAATTTTTCTTTCCGGGGGGAAGAGATTAGTTAGTCGGATTATCATTCAATTTTAGTGATATTCAAATATTACTCAATCCACTTGTAGTCATATTTCGAGAGAGACGATCGTTGGCGAAGTATTTCGCTCAATCACTTGGAAGGACTGTTGCGGTCGGGTGTTCCAGGTCGTAAGACGCGTTGAAGCGCAGTAAAGCCGTTGGTAAGCCTACCTTGCCTTCTTGCCAAAAGAGTGATTAAGGGTAATACTCTTCTGATAATCTATCTTTAGAAGTTTAACTTTATTAGGTTGATAATTATTTGAATTGACACCTTAATTAAATGATAGTCTAAAATTAAATCAATGTCTCTTCTAAAAAAGATTTTGTTTATAAAATTTCCCTCAAAAGAACTTACTCAAGATGAGGTAGAGGACCAACATATGGCCTCTTCAAATTCTGGAGAAATCTCAAATGAAGCTTTGCATATAGCAAAGATTGAAAATAATCTTCAAAAATGGGGTCTACCCAAATTGATAATAAAACTATCTATCTTCATAATACTTTTAATTTCAGAGAACAACAATGTATCAAAATTGTCGAAAGGAAAATCCCTGTATATGGAGATATAGATTCAATTCAATTATTTCCAAAAGACGATATAATTAAACATCGAAAAGAATTTCAATTTCTCCATATAGGAGCGGTCCAAGTTGCTCTTAGACCTATTTTCCGAACAGGACTAGACACGTCAGTATTAGCTATCCTTAGAGATAAACGTCATAAAGACTTTACAAATTCCCTATTAGGAATTATTGAGTCAAACTTAGCAGAGGGACCAGTCTGCTTTACTTGCTATCCTAATTTTATGGTAGCTCTTGACGATCCCCATATTCTCAAAACTTTAAGCCTTGATATTACAGGTCAAGGATTAAATTTAGAAGAAGGTGTTAAAACGATGTGACACTTATTTACAAAATCACTTATAAAACTTTAACATCTTCAATGGAACCAAAGGCATTAGTTCAATCCCCAAAAGGAAAAACAATACTTATTGAGACCAATATTAATAAATCCTCAGTTAGTATCCCTAAGATGCTTTCATGGGATGACATAACAAGAAATCCAAAGTGGACAATCAATAATGCCTTTACACCTCAGAAAAAAGACAAGGAATTATCTCATATAGTTGAGCATCCTGATGGGAGAGTAGATATTAAATTTGAAGATGAGATTCCTCAATTCCCGATGATTAAAGAAAACATAAATAGAAAAGAATTCATGAGTTCAAGAACAAGTACTTCTGGTGTTAAACCAGAATCTCACATTATTGGGACTAATCCCTTAAGAATAAGATCTGTAAGATTGGAACACGGAGTTCCAAATCTCCAATATGAGGAAGAAAAACCACCATCTCCAACTCAAACGAATATGGAGACAGAGTCAATATTTAAAAGTCAATTAATTAAAAATATATATTTTTTTATTTTTCTCTCTCTTCTATCCCCTTCTTCTTTCTCATTTCCCTTAATTCTCTTCCCTCTCCTTTCTCTTTACAACTTCCATGGCCGCCATTGCATTCACTGTTTGCCGTCCACGCCGTCGTCGCGCATGTCGGATCGTCGTCGGAAACCGTCATTCCTTTTATTTTCCTTTTTTCTTTTTTTCCTCTTTTCTTTTTCTTCCCTCATCTACTCCTCTTCTCCTTCTTCTTCCCTTTTCCTTCCTTCCCTTTCTTTTTCATTTTTTTAAAAGAAAAGAACGAAGGGGAAACCCCCTTCATCCGGAAAAACCCCCTTCGTTTCGAATTGGGACAAGAAGATTTTGAACTTGAAGTTCTAGCCCCGCCGATCGAGTCTCCAAAGGGAAATGAACATTTAAACACCGGCTTCGAGTAAGAGAATTCAGCGTTTGAGTTTATCAATAGAGTAGATCGACACGACGGTGGAGACGACGTTAACGACTCCAATGTCGACGACGGAGTAAAGCGTGACGTCGCTCTTGAAACCCAGAGTGTTAAACAGGATCAACGCATGGAACATGATCGTGTTGATTCCAGTGAGCTGCTGGAAGATCGAGAGCACGACAACGATTACTAG

mRNA sequence

ATGGAATGGTTCGCACAGAACGGTTATCTCCAGGATATCGACCTCAAAAGGAATGTCGAATTCCTAAATGATAAATCCAAGCTTCTGACAGCTCTTGCTCAAACGACATCTGATGCAGACTTCCAGAGGATTCTTCAAATGGTAACTTCTTCACAAAGTGAATCTCCAGCTTCTTCTGCCAAAGGAGAAGAGAACGAGCCAGACTACGAACTGGACGATCCATGCCTCGACTCACAACCTATTATCCCTAAGATGCTTTCATGGGATGACATAACAAGAAATCCAAAGTGGACAATCAATAATGCCTTTACACCTCAGAAAAAAGACAAGGAATTATCTCATATAGTTGAGCATCCTGATGGGAGAGTAGATATTAAATTTGAAGATGAGATTCCTCAATTCCCGATGATTAAAGAAAACATAAATAGAAAAGAATTCATGAGTTCAAGAACAAGTACTTCTGGTGTTAAACCAGAATCTCACATTATTGGGACTAATCCCTTAAGAATAAGATCTAATTCAGCGTTTGAGTTTATCAATAGAGTAGATCGACACGACGGTGGAGACGACGTTAACGACTCCAATGTCGACGACGGAGTAAAGCGTGACGTCGCTCTTGAAACCCAGAGTGTTAAACAGGATCAACGCATGGAACATGATCGTGTTGATTCCAGTGAGCTGCTGGAAGATCGAGAGCACGACAACGATTACTAG

Coding sequence (CDS)

ATGGAATGGTTCGCACAGAACGGTTATCTCCAGGATATCGACCTCAAAAGGAATGTCGAATTCCTAAATGATAAATCCAAGCTTCTGACAGCTCTTGCTCAAACGACATCTGATGCAGACTTCCAGAGGATTCTTCAAATGGTAACTTCTTCACAAAGTGAATCTCCAGCTTCTTCTGCCAAAGGAGAAGAGAACGAGCCAGACTACGAACTGGACGATCCATGCCTCGACTCACAACCTATTATCCCTAAGATGCTTTCATGGGATGACATAACAAGAAATCCAAAGTGGACAATCAATAATGCCTTTACACCTCAGAAAAAAGACAAGGAATTATCTCATATAGTTGAGCATCCTGATGGGAGAGTAGATATTAAATTTGAAGATGAGATTCCTCAATTCCCGATGATTAAAGAAAACATAAATAGAAAAGAATTCATGAGTTCAAGAACAAGTACTTCTGGTGTTAAACCAGAATCTCACATTATTGGGACTAATCCCTTAAGAATAAGATCTAATTCAGCGTTTGAGTTTATCAATAGAGTAGATCGACACGACGGTGGAGACGACGTTAACGACTCCAATGTCGACGACGGAGTAAAGCGTGACGTCGCTCTTGAAACCCAGAGTGTTAAACAGGATCAACGCATGGAACATGATCGTGTTGATTCCAGTGAGCTGCTGGAAGATCGAGAGCACGACAACGATTACTAG

Protein sequence

MEWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMVTSSQSESPASSAKGEENEPDYELDDPCLDSQPIIPKMLSWDDITRNPKWTINNAFTPQKKDKELSHIVEHPDGRVDIKFEDEIPQFPMIKENINRKEFMSSRTSTSGVKPESHIIGTNPLRIRSNSAFEFINRVDRHDGGDDVNDSNVDDGVKRDVALETQSVKQDQRMEHDRVDSSELLEDREHDNDY

Homology

[Close]

BLAST of Spg010584 vs. NCBI nr
Match: KAA0034823.1 (hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 8.5e-16
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 2   EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMV--TSSQSESPASS 61
           EWFA+N YLQDID ++NVEFLNDKSKLL ALAQ T+DADFQR+L      SS S+SP+SS
Sbjct: 26  EWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQATTDADFQRLLSTAVNASSSSKSPSSS 85

Query: 62  AKGEEN--EPDYELDDPCLDSQPI 82
            + +E   +P+Y+LDD  LDSQP+
Sbjct: 86  IQEDEEQIDPEYDLDD--LDSQPM 107

[Close]

BLAST of Spg010584 vs. NCBI nr
Match: KAA0025901.1 (hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-14
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 2   EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMVTSSQSESPASSAK 61
           EWF +NGYLQDID  +NV+FLN+KSKLL  LAQ T+DADFQR+L    ++ + S ++S+ 
Sbjct: 61  EWFVENGYLQDIDQGKNVKFLNEKSKLLATLAQATTDADFQRLLPTTVNASTSSKSTSSF 120

Query: 62  GEENE----PDYELDDPCLDSQPI 82
            +E+E    P+Y+LD+P LDSQP+
Sbjct: 121 LQEDEEQVDPEYDLDNPFLDSQPM 144

[Close]

BLAST of Spg010584 vs. NCBI nr
Match: TYJ98361.1 (hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-10
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 4   FAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQ-MVTSSQSESPASSAKG 63
           + +NG LQDID ++N +FLNDK K L AL Q T DADFQR+L   V +S S  PA S   
Sbjct: 139 YQKNGDLQDIDQRKNAKFLNDKLKFLAALVQATIDADFQRLLSTAVNTSSSSKPAPSFIQ 198

Query: 64  EENEP---DYELDDPCLDSQPIIP 84
           E+ E    +Y+LDDP LDSQP  P
Sbjct: 199 EDEEQVDLEYDLDDPFLDSQPRAP 222

[Close]

BLAST of Spg010584 vs. NCBI nr
Match: KAA0059031.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 2   EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADF 42
           EWFA NGYLQDID ++N+EFLNDKSKLL ALAQ T+DADF
Sbjct: 92  EWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQATTDADF 131

[Close]

BLAST of Spg010584 vs. NCBI nr
Match: XP_031739746.1 (uncharacterized protein LOC116403279 [Cucumis sativus] >KAE8649669.1 hypothetical protein Csa_012459 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-08
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 2  EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRIL 46
          EWFA+N YLQDID ++N+EFLNDKSKLL  LAQ T+D +FQR+L
Sbjct: 36 EWFAENNYLQDIDQRKNIEFLNDKSKLLALLAQATTDTNFQRLL 79

[Close]

BLAST of Spg010584 vs. ExPASy TrEMBL
Match: A0A5A7SWC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00570 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-16
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 2   EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMV--TSSQSESPASS 61
           EWFA+N YLQDID ++NVEFLNDKSKLL ALAQ T+DADFQR+L      SS S+SP+SS
Sbjct: 26  EWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQATTDADFQRLLSTAVNASSSSKSPSSS 85

Query: 62  AKGEEN--EPDYELDDPCLDSQPI 82
            + +E   +P+Y+LDD  LDSQP+
Sbjct: 86  IQEDEEQIDPEYDLDD--LDSQPM 107

[Close]

BLAST of Spg010584 vs. ExPASy TrEMBL
Match: A0A5A7SNT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001890 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.9e-15
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 2   EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMVTSSQSESPASSAK 61
           EWF +NGYLQDID  +NV+FLN+KSKLL  LAQ T+DADFQR+L    ++ + S ++S+ 
Sbjct: 61  EWFVENGYLQDIDQGKNVKFLNEKSKLLATLAQATTDADFQRLLPTTVNASTSSKSTSSF 120

Query: 62  GEENE----PDYELDDPCLDSQPI 82
            +E+E    P+Y+LD+P LDSQP+
Sbjct: 121 LQEDEEQVDPEYDLDNPFLDSQPM 144

[Close]

BLAST of Spg010584 vs. ExPASy TrEMBL
Match: A0A5D3BI61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00950 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 4   FAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQ-MVTSSQSESPASSAKG 63
           + +NG LQDID ++N +FLNDK K L AL Q T DADFQR+L   V +S S  PA S   
Sbjct: 139 YQKNGDLQDIDQRKNAKFLNDKLKFLAALVQATIDADFQRLLSTAVNTSSSSKPAPSFIQ 198

Query: 64  EENEP---DYELDDPCLDSQPIIP 84
           E+ E    +Y+LDDP LDSQP  P
Sbjct: 199 EDEEQVDLEYDLDDPFLDSQPRAP 222

[Close]

BLAST of Spg010584 vs. ExPASy TrEMBL
Match: A0A5A7UZX0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.4e-09
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 2   EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADF 42
           EWFA NGYLQDID ++N+EFLNDKSKLL ALAQ T+DADF
Sbjct: 92  EWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQATTDADF 131

[Close]

BLAST of Spg010584 vs. ExPASy TrEMBL
Match: A0A0A0KYU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427780 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 2  EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRIL 46
          EWFA+N YLQDID ++N+EFLNDKSKLL  LAQ T+D +FQR+L
Sbjct: 29 EWFAENNYLQDIDQRKNIEFLNDKSKLLALLAQATTDTNFQRLL 72

The following BLAST results are available for this feature:

BLAST of Spg010584 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034823.1	8.5e-16	63.10	hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]	[more]
KAA0025901.1	1.2e-14	54.76	hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]	[more]
TYJ98361.1	3.1e-10	53.57	hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]	[more]
KAA0059031.1	1.3e-08	80.00	polyprotein [Cucumis melo var. makuwa]	[more]
XP_031739746.1	2.2e-08	70.45	uncharacterized protein LOC116403279 [Cucumis sativus] >KAE8649669.1 hypothetica...	[more]

BLAST of Spg010584 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010584 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWC0	4.1e-16	63.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SNT5	5.9e-15	54.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BI61	1.5e-10	53.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UZX0	6.4e-09	80.00	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE...	[more]
A0A0A0KYU0	1.1e-08	70.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427780 PE=4 SV=1	[more]

BLAST of Spg010584 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010584.1	Spg010584.1	mRNA