Spg010577 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010577
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold5: 10428879 .. 10430873 (-)
RNA-Seq Expression	Spg010577
Synteny	Spg010577

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTTGTTCTTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAGGAAGAAAGAAAAAAAGAAGTCAAGGAGGTCAAAGTCTGTTGTGGAGGAAAATGAAGATTTATTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGACGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGACGTCCCTGCTAGCTCCTCGGGAACAGTGGCAGGTCCAGGAGACTTATCCTTCTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTAATGTATTGATAGAGTCTGATGGTACAAACATCCCAACCTCCGAGGCACGCACATGTGCTTCGTGTTGCATGTCTATCAGATTTTCTGATGAAGATTTGCTGCTAGGGTCAAAGCCTCACAATAGACCTTTATTCGTCTCAAGATACATTTGAGAACAGAGGGTTAGTCGGATCCTCGTCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTCGATGGAAGAATTATCAAACTGTAAATTGGTGATTCAAGGTTTCAATCAAGGCGGACAACGAGCGATTGGCATGATACGCCTCGAGCTCATCATTGGGGATTTGAAGGCCGATACTTTGTTTCATGTGATAGATTCCAAGACCACTTATAAGCTGCTATTATGCCGTCCTTGGATCCATGGCAATGGGGTGATAACCTCTACATTGCACTAGTGCTTCAAATTCTATCAAGATGGCATTAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGCTGAATCCCATTTCGCTAATGCAAAATTTTATATGAAGAGCGACAACGCAGGGGAAACTATACCGGTAGAAATCCCCTTGATAAAAAAGAATGAGAAACTCAATTTAGAGCCACAGGCAGATGCAAGAAAGGAAGTTGTTGAAGATGTGAATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTAAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGACGTTGAAATTTTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCTGAGGATGATCAGATAAAAGAGATCTTGCCTGACAAACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTTATGAAAGATCTGAGCTCTCTGCAACTCAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAAGGAAGGCGAAAGTGGCAGACACAAAACATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCAACCAACAAACTTCTGTTTTTAGGCGCATCAGGCCACTAGTTGCTCGTGCTTTAGTCTTTAAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATCGGGAAAGAAGAGAGTACATTTTCAACTCTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAA

mRNA sequence

ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTTGTTCTTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAGGAAGAAAGAAAAAAAGAAGTCAAGGAGGTCAAAGTCTGTTGTGGAGGAAAATGAAGATTTATTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGACGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGACGTCCCTGCTAGCTCCTCGGGAACAGTGGCAGGTCCAGGAGACTTATCCTTCTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAGCGCAGATGCAAGAAAGGAAGTTGTTGAAGATGTGAATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTAAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAAGGAAGGCGAAAGTGGCAGACACAAAACATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCAACCAACAAACTTCTGTTTTTAGGCGCATCAGGCCACTAGTTGCTCGTGCTTTAGTCTTTAAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATCGGGAAAGAAGAGAGTACATTTTCAACTCTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAA

Coding sequence (CDS)

ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTTGTTCTTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAGGAAGAAAGAAAAAAAGAAGTCAAGGAGGTCAAAGTCTGTTGTGGAGGAAAATGAAGATTTATTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGACGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGACGTCCCTGCTAGCTCCTCGGGAACAGTGGCAGGTCCAGGAGACTTATCCTTCTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAGCGCAGATGCAAGAAAGGAAGTTGTTGAAGATGTGAATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTAAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAAGGAAGGCGAAAGTGGCAGACACAAAACATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCAACCAACAAACTTCTGTTTTTAGGCGCATCAGGCCACTAGTTGCTCGTGCTTTAGTCTTTAAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATCGGGAAAGAAGAGAGTACATTTTCAACTCTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAA

Protein sequence

MKGSQEKYVSIEDENEGWTLVVLRKKQKQSYARKESRLFRDNKRKAKSQRKKEKKKSRRSKSVVEENEDLFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSFFSIKDLLSLPQEAKSADARKEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSESIKKKLLKEGYSLPTTRKGLGYKSPEPVRIIRRRKAKVADTKHITVEEVDDSKEKESVNQQTSVFRRIRPLVARALVFKRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRPSAFQRLNMPIGKEESTFSTLDVTRPSVFQRLSVTTRRDKKE

Homology

[Close]

BLAST of Spg010577 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-40
Identity = 103/214 (48.13%), Postives = 137/214 (64.02%), Query Frame = 0


Query: 146 ARKEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSE 205
           A KE  + + T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KG+SPF +  +
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 206 SIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRRKAKVADTKHITVE 265
            +K             KKLL+EG+ +P +RKG GYKSPEP+ IIR+RK KV D+ HITV 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 266 EVDDSKEKESVNQQTSVFRRIRPLVARALVFKRLSVNETEEESTQPTNSSTRPSVFRRLS 325
           EVD  +EKE  +Q+ S F +IRP V R  VF+RLSV +TE +  Q T+S  + S  +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235

Query: 326 MPIGEEESTFSTPNVTRPSAFQRLNMPIGKEEST 347
           M   +E+ T      TRPSAF+RL++   K+  T
Sbjct: 236 MTFKKEKCTCQALRATRPSAFERLSVAKQKDAQT 269

[Close]

BLAST of Spg010577 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 8.6e-39
Identity = 168/598 (28.09%), Postives = 230/598 (38.46%), Query Frame = 0


Query: 4   SQEKYVSIEDENEGWTLVVLRKKQKQSYARKESRLFRDNKRKAKSQRKKEKKKSRRSKSV 63
           SQEK   IE+++E WT+V  RKK+K +  +KE R +R+ +R  K+Q+ K+KKK+R+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422

Query: 64  VEENEDLFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGP 123
            +E++D     + ITLA++FP RFL D Q E    V CH ++  E++ +P  S       
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482

Query: 124 GDLSFFSIKDLLSLPQEAKS---------------------------------------- 183
            DLS F++ DLLSLPQE K+                                        
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602

Query: 244 --------------------------ADAR------------------------------ 303
                                     ADA+                              
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662

Query: 304 --KEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSE 363
             KE    + T   +K EASTS  K  ++ DEK SN  ILRYVPLSRRKKG+SPF E  +
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722

Query: 364 SIK--------------------------------------------------------- 367
            +K                                                         
Sbjct: 723 GLKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDFT 782

[Close]

BLAST of Spg010577 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-38
Identity = 106/244 (43.44%), Postives = 137/244 (56.15%), Query Frame = 0


Query: 146 ARKEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSE 205
           A KE  + + T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKG+SPF E  +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 206 SIK-------------------------------------------KKLLKEGYSLPTTR 265
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 266 KGLGYKSPEPVRIIRRRKAKVADTKHITVEEVDDSKEKESVNQQTSVFRRIRPLVARALV 325
           KGLGYKSPEP+RI R+ K KV D  HITV+EVD  +EKE  NQ+TS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 326 FKRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRPSAFQRLNMPIGK 347
           F+RLS+ E + +  Q T++  R S F+RL++   EE+    T   T+PSAF+RL++   K
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKK 427

[Close]

BLAST of Spg010577 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 2.5e-38
Identity = 152/480 (31.67%), Postives = 212/480 (44.17%), Query Frame = 0


Query: 4   SQEKYVSIEDENEGWTLVVLRKKQKQSYARKESRLFRDNKRKAKSQRKKEKKKSRRSKSV 63
           SQEK   IE+++EGWT+V  RKK+K +  +KESRL+ + +R  K+Q+ K+KKK+R+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  VEENEDLFCPPQPITLAEYFPRRFLDDSQGEALETVT-----------------CHIVDV 123
            E+++D     + +TLA++FP RFL D Q E    V                  C  +D 
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586

Query: 124 VEDD--------DVPASSSGTV-------------AGPGDLSFFSIKDLLSLPQEAKSA- 183
            ++D        + P   SG V             +    +   +++ L  L +E  ++ 
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646

Query: 184 ----------------------DARKEVV------------------------EDVNTSD 243
                                 D   EVV                        +   T  
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706

Query: 244 LKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSESIK---------- 303
             K EASTS  K  +V DEK SN PILRYVPLSRRKKG+SPF E  + +K          
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766

Query: 304 ------------------------------------------------------------ 322
                                                                       
Sbjct: 767 FTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQ 826

[Close]

BLAST of Spg010577 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-37
Identity = 106/254 (41.73%), Postives = 138/254 (54.33%), Query Frame = 0


Query: 146 ARKEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSE 205
           A KE  + + T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKG+SPF E  +
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211

Query: 206 SIK-----------------------------------------------------KKLL 265
            +K                                                     KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271

Query: 266 KEGYSLPTTRKGLGYKSPEPVRIIRRRKAKVADTKHITVEEVDDSKEKESVNQQTSVFRR 325
           +EG+ +P +RKGLGYKSPEP+RI R+ K KV D+ HITV+EVD  +EKE  NQ+TS F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331

Query: 326 IRPLVARALVFKRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRPSA 347
           I P VARA VF+RLS+ E E +  Q T++  + S F+RL++   EE+    T   T+PSA
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391

[Close]

BLAST of Spg010577 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-40
Identity = 103/214 (48.13%), Postives = 137/214 (64.02%), Query Frame = 0


Query: 146 ARKEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSE 205
           A KE  + + T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KG+SPF +  +
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 206 SIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRRKAKVADTKHITVE 265
            +K             KKLL+EG+ +P +RKG GYKSPEP+ IIR+RK KV D+ HITV 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 266 EVDDSKEKESVNQQTSVFRRIRPLVARALVFKRLSVNETEEESTQPTNSSTRPSVFRRLS 325
           EVD  +EKE  +Q+ S F +IRP V R  VF+RLSV +TE +  Q T+S  + S  +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235

Query: 326 MPIGEEESTFSTPNVTRPSAFQRLNMPIGKEEST 347
           M   +E+ T      TRPSAF+RL++   K+  T
Sbjct: 236 MTFKKEKCTCQALRATRPSAFERLSVAKQKDAQT 269

[Close]

BLAST of Spg010577 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.1e-39
Identity = 168/598 (28.09%), Postives = 230/598 (38.46%), Query Frame = 0


Query: 4   SQEKYVSIEDENEGWTLVVLRKKQKQSYARKESRLFRDNKRKAKSQRKKEKKKSRRSKSV 63
           SQEK   IE+++E WT+V  RKK+K +  +KE R +R+ +R  K+Q+ K+KKK+R+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422

Query: 64  VEENEDLFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGP 123
            +E++D     + ITLA++FP RFL D Q E    V CH ++  E++ +P  S       
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482

Query: 124 GDLSFFSIKDLLSLPQEAKS---------------------------------------- 183
            DLS F++ DLLSLPQE K+                                        
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602

Query: 244 --------------------------ADAR------------------------------ 303
                                     ADA+                              
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662

Query: 304 --KEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSE 363
             KE    + T   +K EASTS  K  ++ DEK SN  ILRYVPLSRRKKG+SPF E  +
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722

Query: 364 SIK--------------------------------------------------------- 367
            +K                                                         
Sbjct: 723 GLKVGDIEVLKESFTTPLTKITKQEIKIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDFT 782

[Close]

BLAST of Spg010577 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.1e-39
Identity = 106/244 (43.44%), Postives = 137/244 (56.15%), Query Frame = 0


Query: 146 ARKEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSE 205
           A KE  + + T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKG+SPF E  +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 206 SIK-------------------------------------------KKLLKEGYSLPTTR 265
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 266 KGLGYKSPEPVRIIRRRKAKVADTKHITVEEVDDSKEKESVNQQTSVFRRIRPLVARALV 325
           KGLGYKSPEP+RI R+ K KV D  HITV+EVD  +EKE  NQ+TS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 326 FKRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRPSAFQRLNMPIGK 347
           F+RLS+ E + +  Q T++  R S F+RL++   EE+    T   T+PSAF+RL++   K
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKK 427

[Close]

BLAST of Spg010577 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-38
Identity = 152/480 (31.67%), Postives = 212/480 (44.17%), Query Frame = 0


Query: 4   SQEKYVSIEDENEGWTLVVLRKKQKQSYARKESRLFRDNKRKAKSQRKKEKKKSRRSKSV 63
           SQEK   IE+++EGWT+V  RKK+K +  +KESRL+ + +R  K+Q+ K+KKK+R+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  VEENEDLFCPPQPITLAEYFPRRFLDDSQGEALETVT-----------------CHIVDV 123
            E+++D     + +TLA++FP RFL D Q E    V                  C  +D 
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586

Query: 124 VEDD--------DVPASSSGTV-------------AGPGDLSFFSIKDLLSLPQEAKSA- 183
            ++D        + P   SG V             +    +   +++ L  L +E  ++ 
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646

Query: 184 ----------------------DARKEVV------------------------EDVNTSD 243
                                 D   EVV                        +   T  
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706

Query: 244 LKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSESIK---------- 303
             K EASTS  K  +V DEK SN PILRYVPLSRRKKG+SPF E  + +K          
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766

Query: 304 ------------------------------------------------------------ 322
                                                                       
Sbjct: 767 FTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQ 826

[Close]

BLAST of Spg010577 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.8e-38
Identity = 106/254 (41.73%), Postives = 138/254 (54.33%), Query Frame = 0


Query: 146 ARKEVVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGKSPFTECSE 205
           A KE  + + T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKG+SPF E  +
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211

Query: 206 SIK-----------------------------------------------------KKLL 265
            +K                                                     KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271

Query: 266 KEGYSLPTTRKGLGYKSPEPVRIIRRRKAKVADTKHITVEEVDDSKEKESVNQQTSVFRR 325
           +EG+ +P +RKGLGYKSPEP+RI R+ K KV D+ HITV+EVD  +EKE  NQ+TS F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331

Query: 326 IRPLVARALVFKRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRPSA 347
           I P VARA VF+RLS+ E E +  Q T++  + S F+RL++   EE+    T   T+PSA
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391

The following BLAST results are available for this feature:

BLAST of Spg010577 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043405.1	2.7e-40	48.13	hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]	[more]
TYK05005.1	8.6e-39	28.09	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055957.1	1.5e-38	43.44	uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]	[more]
KAA0061113.1	2.5e-38	31.67	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
TYK28162.1	1.6e-37	41.73	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]

BLAST of Spg010577 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010577 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPR5	1.3e-40	48.13	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C0W6	4.1e-39	28.09	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UMY2	7.1e-39	43.44	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BY54	1.2e-38	31.67	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DXC7	7.8e-38	41.73	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Spg010577 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010577.1	Spg010577.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process