Spg010565 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg010565
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA topoisomerase
Locationscaffold5: 9209980 .. 9216746 (+)
RNA-Seq ExpressionSpg010565
SyntenySpg010565
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGCAACTTCATTTCTGTTTTCTTGGGTGTTTCTTGCTCCAGCCACCAACCTGTCTTGGTTTTCTTGGGGATTTCTTGGGTTTATTGCTATTCTGTTGTCTCCCAAGTTTTGTTGATTTGTTGCCAGTGTACTCATCTGTTGTGTAAGTTGCCTAATGGACTGTTGAATGTTAGTCACACTCTTCTTGATGTCTTCTACCGAAGTTTCAACCGACTGCAAGCGTCGATCATAGGTTCTCTGGACGTTTGAAGCTTTCGCCTCCATGAGAGAAAGAAAAATCCAATTTCTTGAAGGCCTTGGATTCGGGCGCTCTGATACCAACTTGTTGCACTCAAGTTTCAAAACAATACCTCAAATGATTTTTATTCCATCCTGAAACTCTAACTCAAAGCCATATATATAGGCTTGGAGATAACTAACTCACTCTAACTAACTTTTTTTTTTTTGAACAAGAAACAATACTTTTCATTGAATTAATGAAAAGAGACTAATGCTCAAGAATACAAACTCCATAAAGGAGTGAAAACCATCAAAAGTAACGAAATGAGTACAAGATCAAAGACGAAAAAGCATTAAGAAAAAATTATGAAGGATATATAAACGCATTCCAATTCAGACATATGACCTGTAGAGAGAATCCCAAAAACAATTTGGACAAAGAACACCACGATGATGCCTTTAAACGAGAAGCTTCAAAACGATCAATCCAAGGAAGATGCTTGCTCTGAAAAATTCTTTGATTTCACTCTAACTAACTATTTACAATAAAGAAAGCTTTTAACTATATGGTAAAAGCTAAAATAAAGACAAAGGTAAATGTAAAGTAAGTAAATAGTAAAAGATCTTTAATGATCCTACATTACTAATTCTTTAATTAAAAAAAATTAAAAAATCAAGTAAAAAGGTTGAGGTGTGGTATTTCGTGCCTTGGTGCTTAAGCCACACACCACATCAGCCACCTTCTTCCCTCTCATGTATGAAGATTGAGGTGGTTTGCGTGTGGCATTTGACATACTTAACTTTTTGGGGCAATTAGTGTTATTTACCAATGTTTTTTCTTTCCTTTTATTCTATCTCTATTAGTAACCAAGATTTAGTTCCATAAAATTTACTTGAAGCATAACTAAATAACTAAACTTGCAAATGTCTGCTAAAAAAGGCTTCTTTCATTCTTTAATTTTCCTTATTTATGCATGAAGAGAGAGATAGAGAGAGACAGAATAATATGCACTAATTTGAGAGAATTGTTTGGCCTTTTGAGTGAGGAGGTTGAACTTAGCATTTTTTTTTGTAGAACAAGTATCTGCCTTTAATTCAGAGGAGCTGATAACTATCTCTCTTTGGCTGTTTCTTTCACAGTTTGTTCCAACAACATTGACTCTTGATTCAGGAGTCACGAGACCACCCCCCCTTCTGAGTGAAGCTGATTTGCTTTCTTGTATGGACAAGGTAAGTAAGATGTATTTGCCAACTGAGCTGATCAAATTCTGGGGTTTGAACCTTTATGTTGGACTAGAATTTATATTGCAACTAAGTGATGAAGCCTTTATTTTTGATTAAGTTCTTTTTTGTTTGTTATTTAAGGAGGGAATTGGTACAGATGCAACAATGCATGATCACATCAAGAAGCTGTTAGATAGATTTTATGCAACAAAGGATGCAAACACTCGCTTCACACCAACTAACCTAGTAATGAGCTTGAGTTTTGTCCAGAAGTCATTTTTTTCTTTCCTATGCTCCTTTCATTTCTAAATGTGATTTATAAGATGAATACTATCAACGTTACCATTAATGCACGAGATGATCGAAGCTGTTGTTTTATGTTTTTTTTAGGTTAGTATAGAATTGGGAGAACACTTGAGAAACTCTCATCATATCATCCTCGGAGGAGGAAAAAAAGACCAATGTTACTTATAGGATTAATGCAAAATTTTCTATTTAGAAATTTATTTTGGATAGAATACAAGAGGCATAAAAAAAGCTAACCCTAAAAAGGAGCCGAACTAAAGAAAAGGACTCCAATCTAGCAAAATGAAACCCAACGAATAATTACTAAAGTCTTTACACATCAACGCTCGGAGGGAGGTATGGATTCTAACAAGCGACCAAACATCCTCTTTAGACCGCTCCATACCTTTAAACACTCTATCGTTCCTCTCTCCCTAAAGACCCTAAATCAAAGCACACAAGCCAACTATCCACAAAAGCCTATCCTTTTTGCTAAAAGGGTGAATCAATAATAGCTCCTTAAAATAGAATCGAAAACTCGAGGCTGAGCCATGCTGATATCGGAGGATTGCAAGAAATGGGTCAAAACTACCAACACATAATCACAAGACCACTAAAGATGTCGGCCTCCACTACTCCCTTTCAAAGGATACAACACTGGGGACCCATCAACGAGGATGACCCATCCATAATCCGATCCATGGTGTTACACTTCCATGAACAGTCCACCAGACAAAAATATTTACCTTCTTGGAGATTTTAACCTTCCACGGTAAAGAAAAAACTGGAATACTGGTGGTAGAGGAGGGATTAACAAAACAAATGAAAAAAGATTGGCACATGAACCTCTCAAAAGGACAAGGAATTCAACTACGAAGATCCCTCCTTCGTGGAAAAACAAAGAAGTCCCCAATAAAGATAAATGAGCCAAAATATTTTTTATTTTTCTATTGGAATAACGGCTAACAGAATCCAAGGGCGAGAGAGGACGGGGAGCCCTCAGAGAGGAAAGAACATAAGCCATTGAGTTATAGCCTTGTGGAGGACAAATGGTAGAAATGAGGGAATAAAGAGCAAAGGGGTCTATTTACTAACCATTTGTCATCCTTTTAAGGAGTCTAAGAAGATTCTTTGGAACACCATCAATAGGGCTTTATTTTCTGGAACCTTTGGTGTAATAGAAACAACTGGGTCTTCAACTATAAGTTCTCTGCTTTCAAAAGTTTTTATGGATTTTGTTCTTTACAATGCTTTTAGTTGGTGTACATGCTCACCTCTTTAAAGATTACAGTATCTCCACTCTAGTCTGTACTTGGAAATCTCTTTTGTAATCCACCACAGGTGGTTACAAAACTCCATTCTAGTCTGTAGTTGGAACCTTTGGAGTATGATTGACTCTCATACGAGCTACTCAATCCAATCTCCCTATTTACTTCCTCTCCCTCTTTCGCATTTGGAATGTTTTTATGGAAATGTAACAATGAAAAGGGAGGTACATACAACCTTCATTGTGAGAAAGTTAAAGCTTCTTTTCGAGGAAGGGGGCTTGGGGATTATTGACCTTAAACAGAAAAATACTTATTGTCCAAATGGATTTGGAGATTTGAAAATCTGTTCTTTAGAGGAAGGTTATTTTATTGCATATAAATTTGGCTTCAATTCCTCCAAATTCCAATTATAACCCTGATTTAATTGAAGAATCTTGCTCTCAATTGTTGATCCCTGCCTTGCCTCAGTCCGGTTTTTGTCAATCTGGTATTGAAGTCATATCAAATTCAGCATCCTCCAATCAATTTACTCATCAATTATTCAATCCAATCCTTCTTTAACAAAAGGAGTTTTTATTCCTTCATCCAAGTCTGAAAACAGAGTTATTCACTCTTATTCCTCTCATATTGATTCTGATGATGATTCAGTTGGTATTAGTAGTGTTGAGTTTGAAAATCAGTGTTTGAATGTTGAAAATAATGGATCATTGGAGCAAGATTCCCTCGTTGTGGCTTTTGATTGGATTTTTCAGGATAATGGAGTTGTCTCTAAAGTTCAGTTGAATACCTGTGATGTTTTGGCAACATCTTTAGTTTCTGCTCCAAGCAAATTTTCCTCACTTATTGAAGGTTGTGACATTAAGTTGAAGGAAATTCATCCATTTTTACCTCCTGTTATTGAAAGCGAACAGTAATTTGAATTTGTATTTGTGGTCCTAAATCCATGAAGATGGTTACTTGGAACACCAGAGGTTTAGGGGATATTTCAAAGAGAGTAGCTTTAAAGAAATTTTTGCTACTTCAATGCCCAGATATGGTGTTAATCTAGGAGACTAAGATTGTCTCATTTTGGCAACTGGTGCTTGATAAAATTCATAAGAAGATTGATAGATGGAAGAGATTTAATTTATCATGAGGAGGACTACTAACTCTTTGTTCTTCTATTTTATCAAGTATCCCATTATATTATTTGTCATTATTCTTATCTCCGCCTTCAATTAATGTAAAGCTTGATAGATTTTTTCGATCATTCTTTTGGGAAGGTAGTGAGGGAAGCAAAATAAATCATTTGGTTAGATGGAGTCTTGTTTCAAAGACTAAAATAAAATGGTCTTGGAATTGGGCTTTGAAGCAAAGGATCATGGCTTTATTAGCCAAATGGGGCTGGCGGTTTTTGATGGAACCTCAATCTTTTTGGAGTAGAATTATAGTCCGTATCTCTTCTTATTTCCCCACATTCTCTTAGTTTGTTAGATTCCATGTGGGGAAAGGCTTTGATGTTTACTTGTGGGAAGACACTTGGGTCGGCGATAAACCTTTATGTATCTTATTCCCTCGTCTCTATCGTCTGTTAGATAAGAGGTTGCATTCGGTGGCTTCTGTGTTGCCTTCTCCTGACCCTGTTTCCTCGATTTCTCTGGGTTTTCGTCGCCCTCTTTCGGATAGGGAGGCGATAGATGTGGCAGTCCTCCTTTATATTCTTCGAGATCAGTTTATTCATTATAGGAGGAGGGATATAAGAGTTTGGCTCCCAGACCCGCCCAGGGGCTTCTCTTGACATTCCTATTTTCATTCCTTGTCCGTCTTTTCTGCTTTCCTTGCTGCTCCTGAGGCTTTTATATTTGCCAATCTTTGGAAGGTTAAAATTTCTAAGAAGGTAAAGTTTTTTGCTTGGCAAGTCTTGCTTGGGAAGGTTAACACTTTGGATCGTGTTCAAAGTCATTCTTTCAATGCTTCTAGGCGTTTGTGGTGTTGTTTGGAATGATCGTTCTCTTGATTATGATTTTTGAGGCCGTGGGTTAAGTCGTTTATGCCTTTTCCATTGTTACTGGAGTTCCAATTACTTCTAGTTTGGTTCGTCATGTTTTTTGCTTTGAGATCGATTAAGATCACCCTTTTGGTTTATTTTTGCTTTGAAGTTTGTGGAAGCTTCATATCTGATTGGGACAATTTTGTGGTTGGTTGGGCTTCAGTTCATGCAAAGTTTTGCTTCAATTCTTTATATTAGAAACTCTAAGCTCCATTTTCAGAAGTTGGGTTGGATCATAATCAATTGATCTTCCTAAGCAAAGTTTCTTTCATGACTCGTCCGATTTGAATAAACTCATATAAAGGTCTCTTCTTGATGTTCTCTCTCAAAGCCTTTTTGTTGTCTTCTCATTGTAGAACTCTTGTCTGATTTGGAATGCTTTTATTTATCTTTTGTAATTTGTTTTGTTTGGACCTTATGCTTTTTATTGTTTCTCTTTTATTTTCACTATCTTGTGGAGTTTGTATCCTTTGAGCCTTAATCTCTTTTAATTTCATCAATGAAAAATTTCGTTTCTTGTTGAAAAAATATCACTCCCTTGTGGAGTTTGAATCTTTTGAGCATTAGTCTCTTTTCATTATATCAATGAAAAGTTTTATTTTTTATTTTATTTTATTTTATTTTTTTATTTTATTTTTAAAATCAAATGGTATAAACTTCACAAACATGATGGAAGAAGCCGTCTTATGGTGTGCTTTTATGGGTGTCTGTATGGTTGTTTAAATGATATTCATTTATTTCTTATTTTATTGGATTAGATTTCTTACAGTATCTTTGAGGAGCTTTGCAGTACCTTACGGTTTATATTCTATCTCTACCCTCATTTAGTTTTTTCTGTTTCTTGTAAAAATTTACTATTCTTTCAGGGTGAGGCTCTGGTAATGGGATATGACGACATGGGGTGAGTACTTTTCTTTAAGGTATTAGTATTATATAGATGATGAGTTAAAACAAACACCCTTCACCATATAGAAGTTATCACCAAATAACTTGACTACCCTCATAAAGCTGTAAACCATCGTAGCCTAGTAGCTCGTGGTTTAGATATTTGCTGTAGAAAATAAGATAATGCTTTCTGACTATGCTCTGTTAGATTCTGTTACCATTGAAAGCCTGAAGGTCATCTACATTTATATATTAATACATACTTTATGAACATTAAGTTGTTTCTTCAGATATGGATTCCAGAAACTGATTTAACTGACATCAGTACTAAAGAAATTAAGCAATTGTATATTTGAGACTACAATGATCGTTAAAGTATCGATATAATTAAATTTTCCATAATTCATCAACTTAATTTTTGGGTTGATTGGTGATTTAACTTGGTATTAGAACAGGAGGTCCTGTGTTTGAACTCCCGTGATGTCATTCTTCCCCAATTAATATTGATTTTCATTTGTTGGGTCTTTTGCAAATTTCTAAGTCTACAAGTGAGGGGAGTGTTCAGTATTGATATAATTAAACTTGCCATAACCCATCAACTTAGGCTTTTGGGTTGATTGGTGATTTAACAACGACAAATTACAACCACGTTTTAAAGCATGACAAAATTTGTGATCAAATCATTTGTAGTAAAATTCTGAAGAAAATTCTCTTTGCAATGGATATTATTTTAATCATGGTATGGTTGTCCTAATTAGACGTCCCCGCATGTGTCTTGGTTTGATTTTTGGTGCAGTAAACGATCAATAATGTATGAAGCTCAGAAGGAGAGGAATTCTTTTGGCACATGA

mRNA sequence

ATGGACAGCAACTTCATTTCTGTTTTCTTGGGTGTTTCTTGCTCCAGCCACCAACCTGTCTTGGTTTTCTTGGGGATTTCTTGGGTTTATTGCTATTCTGTTGTCTCCCAAGTTTTGTTGATTTGTTGCCAGTGTACTCATCTGTTGTGTAAGTTGCCTAATGGACTGTTGAATGTTAGTCACACTCTTCTTGATGTCTTCTACCGAAGTTTCAACCGACTGCAAGCGTCGATCATAGGTTCTCTGGACTTTGTTCCAACAACATTGACTCTTGATTCAGGAGTCACGAGACCACCCCCCCTTCTGAGTGAAGCTGATTTGCTTTCTTGTATGGACAAGGAGGGAATTGGTACAGATGCAACAATGCATGATCACATCAAGAAGCTGTTAGATAGATTTTATGCAACAAAGGATGCAAACACTCGCTTCACACCAACTAACCTATCTGAAAACAGAGTTATTCACTCTTATTCCTCTCATATTGATTCTGATGATGATTCAGTTGGTATTAGTAGTGTTGAGTTTGAAAATCAGTGTTTGAATGTTGAAAATAATGGATCATTGGAGCAAGATTCCCTCGTTGTGGCTTTTGATTGGATTTTTCAGGATAATGGAGTTGTCTCTAAAGTTCAGTTGAATACCTGTGATGTTTTGGCAACATCTTTAGTTTCTGCTCCAAGCAAATTTTCCTCACTTATTGAAGGTTGTGACATTAAGTTGAAGGAAATTCATCCATTTTTACCTCCTGTTATTGAAAGCGAACAATTCCATGTGGGGAAAGGCTTTGATGTTTACTTGTGGGAAGACACTTGGGTCGGCGATAAACCTTTATGTATCTTATTCCCTCGTCTCTATCGTCTGTTAGATAAGAGGTTGCATTCGGTGGCTTCTGTGTTGCCTTCTCCTGACCCTGTTTCCTCGATTTCTCTGGGTTTTCGTCGCCCTCTTTCGGATAGGGAGGCGATAGATGTGGCAGTCCTCCTTTATATTCTTCGAGATCAGTTTATTCATTATAGGAGGAGGGATATAAGAGGTGAGGCTCTGGTAATGGGATATGACGACATGGGTAAACGATCAATAATGTATGAAGCTCAGAAGGAGAGGAATTCTTTTGGCACATGA

Coding sequence (CDS)

ATGGACAGCAACTTCATTTCTGTTTTCTTGGGTGTTTCTTGCTCCAGCCACCAACCTGTCTTGGTTTTCTTGGGGATTTCTTGGGTTTATTGCTATTCTGTTGTCTCCCAAGTTTTGTTGATTTGTTGCCAGTGTACTCATCTGTTGTGTAAGTTGCCTAATGGACTGTTGAATGTTAGTCACACTCTTCTTGATGTCTTCTACCGAAGTTTCAACCGACTGCAAGCGTCGATCATAGGTTCTCTGGACTTTGTTCCAACAACATTGACTCTTGATTCAGGAGTCACGAGACCACCCCCCCTTCTGAGTGAAGCTGATTTGCTTTCTTGTATGGACAAGGAGGGAATTGGTACAGATGCAACAATGCATGATCACATCAAGAAGCTGTTAGATAGATTTTATGCAACAAAGGATGCAAACACTCGCTTCACACCAACTAACCTATCTGAAAACAGAGTTATTCACTCTTATTCCTCTCATATTGATTCTGATGATGATTCAGTTGGTATTAGTAGTGTTGAGTTTGAAAATCAGTGTTTGAATGTTGAAAATAATGGATCATTGGAGCAAGATTCCCTCGTTGTGGCTTTTGATTGGATTTTTCAGGATAATGGAGTTGTCTCTAAAGTTCAGTTGAATACCTGTGATGTTTTGGCAACATCTTTAGTTTCTGCTCCAAGCAAATTTTCCTCACTTATTGAAGGTTGTGACATTAAGTTGAAGGAAATTCATCCATTTTTACCTCCTGTTATTGAAAGCGAACAATTCCATGTGGGGAAAGGCTTTGATGTTTACTTGTGGGAAGACACTTGGGTCGGCGATAAACCTTTATGTATCTTATTCCCTCGTCTCTATCGTCTGTTAGATAAGAGGTTGCATTCGGTGGCTTCTGTGTTGCCTTCTCCTGACCCTGTTTCCTCGATTTCTCTGGGTTTTCGTCGCCCTCTTTCGGATAGGGAGGCGATAGATGTGGCAGTCCTCCTTTATATTCTTCGAGATCAGTTTATTCATTATAGGAGGAGGGATATAAGAGGTGAGGCTCTGGTAATGGGATATGACGACATGGGTAAACGATCAATAATGTATGAAGCTCAGAAGGAGAGGAATTCTTTTGGCACATGA

Protein sequence

MDSNFISVFLGVSCSSHQPVLVFLGISWVYCYSVVSQVLLICCQCTHLLCKLPNGLLNVSHTLLDVFYRSFNRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVIHSYSSHIDSDDDSVGISSVEFENQCLNVENNGSLEQDSLVVAFDWIFQDNGVVSKVQLNTCDVLATSLVSAPSKFSSLIEGCDIKLKEIHPFLPPVIESEQFHVGKGFDVYLWEDTWVGDKPLCILFPRLYRLLDKRLHSVASVLPSPDPVSSISLGFRRPLSDREAIDVAVLLYILRDQFIHYRRRDIRGEALVMGYDDMGKRSIMYEAQKERNSFGT
Homology
[Close]
BLAST of Spg010565 vs. NCBI nr
Match: KAF7834128.1 (DNA topoisomerase 3-alpha isoform X1 [Senna tora])

HSP 1 Score: 139.8 bits (351), Expect = 4.7e-29
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +G + ++   LDV+ Y S+  + +    +G   F+PTTLTLDSGVTRPPPLLSEADLLSC
Sbjct: 451 SGRVILAKNYLDVYRYESWGGSMIPTYTVGQ-QFIPTTLTLDSGVTRPPPLLSEADLLSC 510

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI 155
           MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Sbjct: 511 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVM 553

[Close]
BLAST of Spg010565 vs. NCBI nr
Match: XP_025672469.1 (DNA topoisomerase 3-alpha [Arachis hypogaea] >RYQ94374.1 hypothetical protein Ahy_B08g089281 isoform B [Arachis hypogaea])

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-29
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+C
Sbjct: 517 SGRVVLERNYLDVYRYESWGGTMLPTYTVGQ-QFVPTTLTLDSGVTRPPPLLSEADLLTC 576

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI 155
           MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Sbjct: 577 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVM 619

[Close]
BLAST of Spg010565 vs. NCBI nr
Match: XP_025615779.1 (DNA topoisomerase 3-alpha isoform X3 [Arachis hypogaea])

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-29
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+C
Sbjct: 396 SGRVVLERNYLDVYRYESWGGTMLPTYTVGQ-QFVPTTLTLDSGVTRPPPLLSEADLLTC 455

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI 155
           MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Sbjct: 456 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVM 498

[Close]
BLAST of Spg010565 vs. NCBI nr
Match: XP_038904102.1 (DNA topoisomerase 3-alpha isoform X2 [Benincasa hispida])

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-29
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 82  LDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANT 141
           L FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANT
Sbjct: 457 LAFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANT 516

Query: 142 RFTPTNLSENRVI 155
           RFTPTNL E  V+
Sbjct: 517 RFTPTNLGEALVM 529

[Close]
BLAST of Spg010565 vs. NCBI nr
Match: XP_025615776.1 (DNA topoisomerase 3-alpha isoform X2 [Arachis hypogaea] >XP_025615778.1 DNA topoisomerase 3-alpha isoform X2 [Arachis hypogaea])

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-29
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+C
Sbjct: 451 SGRVVLERNYLDVYRYESWGGTMLPTYTVGQ-QFVPTTLTLDSGVTRPPPLLSEADLLTC 510

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI 155
           MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Sbjct: 511 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVM 553

[Close]
BLAST of Spg010565 vs. ExPASy Swiss-Prot
Match: C7J0A2 (DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=TOP3A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-28
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 74  LQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRF 133
           L   IIG   FVPTTLTLDSG+TRPPPLL+EADLL CMDK GIGTDATMHDHIKKLLDR 
Sbjct: 479 LPTYIIGQ-QFVPTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLLDRC 538

Query: 134 YATKDANTRFTPTNLSENRVI 155
           YATKDANTRF+PTNL E  V+
Sbjct: 539 YATKDANTRFSPTNLGEALVM 558

[Close]
BLAST of Spg010565 vs. ExPASy Swiss-Prot
Match: Q9LVP1 (DNA topoisomerase 3-alpha OS=Arabidopsis thaliana OX=3702 GN=TOP3A PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-27
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 84  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRF 143
           F+PTTLTLD+ VTRPPPLL EADLLSCMDK GIGTDATMHDHIKKLLDR YATKDANTRF
Sbjct: 486 FIPTTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANTRF 545

Query: 144 TPTNLSENRVI 155
           +PTNL E  V+
Sbjct: 546 SPTNLGEALVM 556

[Close]
BLAST of Spg010565 vs. ExPASy Swiss-Prot
Match: Q8T2T7 (DNA topoisomerase 3 OS=Dictyostelium discoideum OX=44689 GN=top3 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-09
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 84  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRF 143
           F P  + L  G T  P  ++EA+LL+ MD   IGTDATM  HI+ + DRFY  K+ + +F
Sbjct: 500 FTPKRIDLTKGTTVAPHYITEAELLTAMDNNKIGTDATMATHIQTIQDRFYVKKNESNQF 559

Query: 144 TPTNLSENRV 154
            P+NL  + V
Sbjct: 560 VPSNLGVSLV 569

[Close]
BLAST of Spg010565 vs. ExPASy Swiss-Prot
Match: O70157 (DNA topoisomerase 3-alpha OS=Mus musculus OX=10090 GN=Top3a PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-09
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF---YRSFNRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +GL+ ++   LDV+   + S   L     GS  F P+T+ +  G T PP LL+EADL++ 
Sbjct: 468 HGLIILARNYLDVYPYDHWSDKLLPVYEQGS-HFQPSTVEMVDGETSPPQLLTEADLIAL 527

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVIHSYSS 160
           M+K GIGTDAT  +HI+ +  R Y    ++ RF P +L    ++  Y S
Sbjct: 528 MEKHGIGTDATHAEHIETIKARMYVGLTSDKRFLPGHLGMG-LVEGYDS 574

[Close]
BLAST of Spg010565 vs. ExPASy Swiss-Prot
Match: Q13472 (DNA topoisomerase 3-alpha OS=Homo sapiens OX=9606 GN=TOP3A PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-09
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF---YRSFNRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +GL+ ++   LDV+   + S   L     GS  F P+T+ +  G T PP LL+EADL++ 
Sbjct: 468 HGLMILARNYLDVYPYDHWSDKILPVYEQGS-HFQPSTVEMVDGETSPPKLLTEADLIAL 527

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVIHSYSS 160
           M+K GIGTDAT  +HI+ +  R Y     + RF P +L    ++  Y S
Sbjct: 528 MEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMG-LVEGYDS 574

[Close]
BLAST of Spg010565 vs. ExPASy TrEMBL
Match: A0A445C164 (DNA topoisomerase OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040948 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-29
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+C
Sbjct: 451 SGRVVLERNYLDVYRYESWGGTMLPTYTVGQ-QFVPTTLTLDSGVTRPPPLLSEADLLTC 510

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI 155
           MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Sbjct: 511 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVM 553

[Close]
BLAST of Spg010565 vs. ExPASy TrEMBL
Match: A0A444XXP0 (DNA topoisomerase OS=Arachis hypogaea OX=3818 GN=Ahy_B08g089281 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-29
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+C
Sbjct: 517 SGRVVLERNYLDVYRYESWGGTMLPTYTVGQ-QFVPTTLTLDSGVTRPPPLLSEADLLTC 576

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI 155
           MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Sbjct: 577 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVM 619

[Close]
BLAST of Spg010565 vs. ExPASy TrEMBL
Match: A0A444XXP6 (DNA topoisomerase OS=Arachis hypogaea OX=3818 GN=Ahy_B08g089281 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-29
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+C
Sbjct: 523 SGRVVLERNYLDVYRYESWGGTMLPTYTVGQ-QFVPTTLTLDSGVTRPPPLLSEADLLTC 582

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI 155
           MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Sbjct: 583 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVM 625

[Close]
BLAST of Spg010565 vs. ExPASy TrEMBL
Match: A0A6P4BYM4 (DNA topoisomerase OS=Arachis duranensis OX=130453 GN=LOC107463313 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-29
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 54  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC 113
           +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+C
Sbjct: 520 SGRVVLERNYLDVYRYESWGGTMLPTYTVGQ-QFVPTTLTLDSGVTRPPPLLSEADLLTC 579

Query: 114 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI 155
           MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Sbjct: 580 MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVM 622

[Close]
BLAST of Spg010565 vs. ExPASy TrEMBL
Match: A0A0A0LBG7 (DNA topoisomerase OS=Cucumis sativus OX=3659 GN=Csa_3G813290 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-29
Identity = 67/76 (88.16%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 79  IGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKD 138
           +    FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKD
Sbjct: 479 VSGQQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKD 538

Query: 139 ANTRFTPTNLSENRVI 155
           ANTRFTPTNL E  V+
Sbjct: 539 ANTRFTPTNLGEALVM 554

[Close]
BLAST of Spg010565 vs. TAIR 10
Match: AT5G63920.1 (topoisomerase 3alpha )

HSP 1 Score: 125.6 bits (314), Expect = 8.6e-29
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 84  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRF 143
           F+PTTLTLD+ VTRPPPLL EADLLSCMDK GIGTDATMHDHIKKLLDR YATKDANTRF
Sbjct: 486 FIPTTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANTRF 545

Query: 144 TPTNLSENRVI 155
           +PTNL E  V+
Sbjct: 546 SPTNLGEALVM 556

[Close]
BLAST of Spg010565 vs. TAIR 10
Match: AT2G32000.1 (DNA topoisomerase, type IA, core )

HSP 1 Score: 49.7 bits (117), Expect = 6.0e-06
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 91  LDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL 149
           L  G T PP  L+E++L+S M+K GIGTDA++  HI  + +R Y    +  +  PT L
Sbjct: 477 LYEGNTAPPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVPTAL 534

[Close]
BLAST of Spg010565 vs. TAIR 10
Match: AT2G32000.2 (DNA topoisomerase, type IA, core )

HSP 1 Score: 49.7 bits (117), Expect = 6.0e-06
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 91  LDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL 149
           L  G T PP  L+E++L+S M+K GIGTDA++  HI  + +R Y    +  +  PT L
Sbjct: 450 LYEGNTAPPDYLTESELISLMEKHGIGTDASIAVHINNIGERNYVQVQSGRKMVPTAL 507

The following BLAST results are available for this feature:
BLAST of Spg010565 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7834128.14.7e-2970.19DNA topoisomerase 3-alpha isoform X1 [Senna tora][more]
XP_025672469.16.2e-2971.15DNA topoisomerase 3-alpha [Arachis hypogaea] >RYQ94374.1 hypothetical protein Ah... [more]
XP_025615779.16.2e-2971.15DNA topoisomerase 3-alpha isoform X3 [Arachis hypogaea][more]
XP_038904102.16.2e-2993.15DNA topoisomerase 3-alpha isoform X2 [Benincasa hispida][more]
XP_025615776.16.2e-2971.15DNA topoisomerase 3-alpha isoform X2 [Arachis hypogaea] >XP_025615778.1 DNA topo... [more]
BLAST of Spg010565 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
C7J0A21.1e-2880.25DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=TOP3A PE=3... [more]
Q9LVP11.2e-2784.51DNA topoisomerase 3-alpha OS=Arabidopsis thaliana OX=3702 GN=TOP3A PE=1 SV=1[more]
Q8T2T71.9e-0944.29DNA topoisomerase 3 OS=Dictyostelium discoideum OX=44689 GN=top3 PE=3 SV=1[more]
O701572.5e-0937.61DNA topoisomerase 3-alpha OS=Mus musculus OX=10090 GN=Top3a PE=2 SV=1[more]
Q134725.7e-0937.61DNA topoisomerase 3-alpha OS=Homo sapiens OX=9606 GN=TOP3A PE=1 SV=1[more]
BLAST of Spg010565 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A445C1643.0e-2971.15DNA topoisomerase OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040948 PE=3 SV=1[more]
A0A444XXP03.0e-2971.15DNA topoisomerase OS=Arachis hypogaea OX=3818 GN=Ahy_B08g089281 PE=3 SV=1[more]
A0A444XXP63.0e-2971.15DNA topoisomerase OS=Arachis hypogaea OX=3818 GN=Ahy_B08g089281 PE=3 SV=1[more]
A0A6P4BYM43.0e-2971.15DNA topoisomerase OS=Arachis duranensis OX=130453 GN=LOC107463313 PE=3 SV=1[more]
A0A0A0LBG73.9e-2988.16DNA topoisomerase OS=Cucumis sativus OX=3659 GN=Csa_3G813290 PE=3 SV=1[more]
BLAST of Spg010565 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63920.18.6e-2984.51topoisomerase 3alpha [more]
AT2G32000.16.0e-0641.38DNA topoisomerase, type IA, core [more]
AT2G32000.26.0e-0641.38DNA topoisomerase, type IA, core [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013824DNA topoisomerase, type IA, central region, subdomain 1GENE3D1.10.460.10Topoisomerase I, domain 2coord: 67..195
e-value: 4.5E-16
score: 60.9
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 88..151
e-value: 5.7E-16
score: 58.6
NoneNo IPR availablePANTHERPTHR11390:SF21DNA TOPOISOMERASE 3-ALPHAcoord: 83..150
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 83..150
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 86..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg010565.1Spg010565.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006265 DNA topological change
cellular_component GO:0005694 chromosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003916 DNA topoisomerase activity