Spg010421 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010421
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold5: 11057026 .. 11062579 (-)
RNA-Seq Expression	Spg010421
Synteny	Spg010421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTTGTCTATTACTGATCCATTGGATGACATAAGTCAAGTCCAATCAAATTATGCCATGTGGCAATTGGACCCGAGACTAATGTAACCCGAGGTCATTGAAGAAATTGGGCTAAATTAAAATAATTCAACTTTATTAAAAAGGATTTGATTAAAGTCCAAATATAGCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGACCACCATTCATTTTGGGCATTGAGATTCAGAGACAGAGTCAAAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCCAAAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGGTTTGAAGACTAGAAGACTCTAAGAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGACCGGTCAAGAGGATCAACAAGTCAGAAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACGGGCCGATCCAAAAGAATGTCAAGCCAGTGGGCCGATCATCCAAGAAGATCAACAAGCCAACCGACCGATCAAGAGGATCAACAAGTCAGAAGGCCGATCATCCAAGAGGGTCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGACCGATCCAAAAGAACGTCAAGCCAGTAGGCCGATCATCCAAGAAGATCAACAAGCCAACAAGTCTATCCAAGAGATCATCAAACCAACAAGCTGATCCAGGAGATCATCAAGCCAACAGGCCGATCCAAGAGGTCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAACCAACAAGCCGATCCAAGAGATCATCAAGCCAACAGACCGATCTAAGAGATCATCAAACCAACAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGCTAGAGGCCAAAGTTTATATATTTGTGAGAAAGAATCAGAGGATAAATATTAGAGACTGTAACACTTCTATATCAAATTCAATAAAATCAAGTTCATTTCCACGAATTAAATTTTCCTATCGAAATCTCGTGTGAACAAATTGGCACACCCAGTGGGACAGTCTCTACCTCTCATCTCTTTTTCTCACAAAGAAATCATGACTTCTGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTTCTACGTGGGGTCAATTACTCGCAGTCGCTCCAAGAAAACCCAACACGAAGGCAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACACATGACAAAATCTGCTCAACTTGAAATTGCAACTGCAAAAAATATGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACCAAATGAAACATCGAGTCTTGACGTAATGTCTGTTATGATGACTGGTGCAGGAACTAGTGAAGAATGGATGGCTGAAGTTGAGAAGAAAATTAGCATGTTACTGAAGATTGTTGAAGAGAAAGACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCGCTGAATCAAGTCAAACCCTCGCCATCAAAGACAAGGGAAAGACCACTATACAAGATTAGTCACAACATTCCACTTCTATTGTTTCACTGTCCGTCCAACAGCTCCAGGATATGATCATGAACTCCATCAGAGCTCAATATGGTGGACCGACTCAAAATTCTCTATTGTACTCCAAGCCATATACCAAGAGAATCAACAATCTGAGAATGCCTAATGGATACCAGCCACCAAAGTTTCAACAATTTGACGGGAAGGGCAATCCCAAGCAGCACGTTGCTCATTTCGTCGAGACATGTGAAAATGATGGTACTAGAGGAGACCTACTGGCCAAGCAGTTCGTACGAACACTGAAGGGAAATGCTTTCGACTGGTATACCGACCTTGAGCCTAAGACTATTGATAGTTGGGAGCAACTTGAGAAGGAGTTCCTCAACCGCTTCTACAGCACAAGACGAACAGTCAGCATGATAGAGCTCACCAATGCCAAACAACGAAAAGACGAACCAGTTGTTGACTACATCAATCGTTGGAGAGCTGTAAGCCTAGACTCCAAGGACCGACTCACCGAAGTGTCTTCTGTTGAAATGTGCATCCAAGGCATGCATTGGGGACTTCTCTATATTCTAAAAGGAATAAAACCTCGTACTTTCGAAGAATTAGCAACACGCGCCCACGATATGGAGTTAAGTATTGCTAGTCGAGGAGATAAAAGACCTTCTACTCTCTAATATGAAGAAAGACGAAAAGGACATTGAAACAACTATAGAAGAATCTATGGTTGTAAATACAACCCCTCCCGAGTTGTAAGCACAAGAAGATTGAAAAGCAACAAGGAAATGAAAGGCGTCGCTTGACTTTGAAGGAAAGACAAAAAAAAAGATCTATCCTTTTCCTAATTCCGACGTCCCTAACATGTTAGAACAACTATTGAAAATGCGGTTGATAGAACTTCCCGAGTGCAAACGACCAGAAGAGATTGAAAAGGTCGATCATCCCAACTATTGCAAATATCATCGAGTTATCAGTCATCCGGTAGAAAAATGTTTTGTCCTGAAAGAGCTAATTCTGAGGTTAGCTAAAGAAGGAAAAATCGAGTTGGATCTTGAGGAAGTAGCTCAATCAAATCATGCTACAACAACAACAAGCACTTACAATCAAATGTGTTTTGATTCGCTTCACGGTCAAGAGATGCACCTACTCCAATTTGGAACCTTGGAGCCTATAGCTATTTGGTTTCACCATGAGGTATCAGGAGACAAATCTCAAGATACAGTCAATCTTGTCAGTGATAAAGGTAAAGGAAATACTGTCATGACTCGTCAGAAGAAACAAAGACGACATCTCGTTCAAAAAGGATGTTGCTCATCCAAAAGAGTGAATAAACATCGAAGACAAAAGAATCTAAGGAAACCCAAACTTGAGGAAAAGAGAAATCAAGATCCTTCTCAACATTGTCAACTAGTAACCTTAAAAGAATCATCCTCGAGAAATTTTCATCCCATCAAGAAAATGGAAGAAAATTTTGCAAGTTCATGTTATATCAATGTAGAAGAAGATGGCGATTCAAAGGAAGTCGAGCAAAGAACTTCTATCTTCGATCGCATTGAGCCTTCAACTACTCGACCTTCGGTCTTCCAAAGAATGAGTATGGCTGCAACAGAAGAAGAAACTCAAAGCTTGACTTCCACCATCACTCGACATTCAGCCTTCCAAAGGCTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAACAACTGTTTTTTATCGCCTCAAAGTGACAAGCAACCAACATGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACAATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTTTGTTCTCATAAACACAGAAGGTTCCTTGAAGGTGAAACTAAATCTTATCATTTTGACAAATCCTACAAATGAAGGGTCTGATCAAGACTATGATAGAGAAAAAGAAATTTAAAATGTATTTCTCCTTATCGCATGAACATAAACTGCATGATGCTCCTGGCCCACACGAGCTTAAAAGGTGAATGCGAAAAAAAAAAAACTTGAACTACGTTATGACTTGATCCCTTTCCTTCAAGGGTACGTAGGCAACTTAAAGAAAACTTAAAAGCATGACAATACAAGTTAAAGATGCTTACCCTTACTGGGGGCAACACAGTAAATTGAAGACGTACATTGCTATGAATGGAATTCTACGAATTAAATGCATAAAAGAAGGCTCCGTTCTTTCAAGTTCGACGATTCGCTCGCTCCAAGTCCGGCGTCTCGCCTAGTTCGGTGTCTCGCTCCTTCTATGTTTGCATTCCACACACTTCAAGTTTGGTGTTTCGCTCCTTCAAAGTTTGGAGTCTCACCCCCTTGAAGTTTGGCGTCCTGCTTCCTCTAAGTTTGTATTCTCCATGCTTCAAGTTTGGTGTTTCGCTCGCTCAAAGTTCGATGTCTCACCCTCTCCACGTTCGGCGATTACTCCATTCAGGGTGGCAGTTGAAGGCTTTGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGGCAGTTGAAAACTTTGCTTCACTACAAATGTTGGCGGTTGAAGACTTCGCTATCGTTTCATCTTCAAAATTTGGCGGACGATGTCACTTCATTTTCAAAGGTTGATCATCAAAAACTTTGCTTCATCTTCAAAGGATAGCGGTGGAAGGATTCGTTGTCGCTTCAGCTTCAAAAGTTGACAGTCGGCGACTTCACTGCAATTTTAAAAGTTGACGGTTGGCGACTTTTGCTTCATCTTCAAAAGTTGACGGTTGGCAGTCTCACTTCTTTTTCAAAAGTTGACAGCTGGCGGCTTCGCTTCGTCTTCAAAACTTCGCAGTTGGCGGTTTTTGCTTCATCTTCAAATATTGATAGTTGGCAACTTTCGCTTCAACTTCAAAAGTTGACAGTTGATGACTTCAGTTCATCTTCAAAAGTTGGCGGTCGGCTTCTTTCGCTTCATTTTCAAAAGTTGACGGTTGACGGCCTTGCTTCTTCTTCAAAATTTGATGGTTGATAACTTTCGCTTCATCTTCAAAAGTTGACGGTTGGCGGCCCCACTTCTTCAAAAGTTGACGATTGACAACTTCACTTCATCTTCAAAAGTTGGCAATTGAAAGTTTTGCTTTCACTTCATATTCCAAAAGTTGACAGTTGAAGGCTTCACGTTAGAACATCTTCAAAGATGGGCGACTTTAACGTTGGCTTTATCTTGAAAGTGTCTAGACTGGAAGATGCATCTTAGCTGCAAGTAAAAAAAAAATGCTTGATATCAAACCAAAAAAAAAAAAAAAAGAAAGAAAGACAATAAAGGTGTTGTTAAAAAAATGGTGACCACCCCTGCAGGATACTACAGTCATCAAAGTGACTGGTCTAGACATGTGGTGAAATCACTGCAAATGGATCTGATGACGACCATTGTAGGCGAGTCTGGTGACCACCCCTGCAGGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAATGAATCTGATGACGATCACTGTAGGCAAATCTCGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAAGAGTGCATCGCTGTAGGCAAATATGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAATATAGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCAAATCTGGTGACTACCCTTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGAAGTGCATCACTGTAGCCGATCCAAGAGATCATCAAACCAACAAGCCGATCCAAGAGATCATCAAGCCAACAGGTCGATCTAA

mRNA sequence

ATGCCACTTAGACAGAGTCAAAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCCAAAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGTCGCTCCAAGAAAACCCAACACGAAGGCAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACACATGACAAAATCTGCTCAACTTGAAATTGCAACTGCAAAAAATATGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACCAAATGAAACATCGAGTCTTGACGTAATGTCTGTTATGATGACTGGTGCAGGAACTAGTGAAGAATGGATGGCTGAAGTTGAGAAGAAAATTAGCATGTTACTGAAGATTGTTGAAGAGAAAGACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCGCTGAATCAAGAGACAAATCTCAAGATACAGTCAATCTTGTCAGTGATAAAGGTAAAGGAAATACTGTCATGACTCGTCAGAAGAAACAAAGACGACATCTCGTTCAAAAAGGATGTTGCTCATCCAAAAGAGTGAATAAACATCGAAGACAAAAGAATCTAAGGAAACCCAAACTTGAGGAAAAGAGAAATCAAGATCCTTCTCAACATTGTCAACTAGTAACCTTAAAAGAATCATCCTCGAGAAATTTTCATCCCATCAAGAAAATGGAAGAAAATTTTGCAAGTTCATGTTATATCAATGTAGAAGAAGATGGCGATTCAAAGGAAGTCGAGCAAAGAACTTCTATCTTCGATCGCATTGAGCCTTCAACTACTCGACCTTCGGTCTTCCAAAGAATGAGTATGGCTGCAACAGAAGAAGAAACTCAAAGCTTGACTTCCACCATCACTCGACATTCAGCCTTCCAAAGGCTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAACAACTGTTTTTTATCGCCTCAAAGTGACAAGCAACCAACATGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACAATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTTTGTTCTCATAAACACAGAAGGTTCCTTGAAGGATTCGTTGTCGCTTCAGCTTCAAAAGTTGACAGTCGGCGACTTCACTGCAATTTTAAAAGTTGACGGTTGGCGACTTTTGCTTCATCTTCAAAAGTTGACGGTTGGCAGTCTCACTTCTTTTTCAAAAGTTGACAGCTGGCGGCTTCGCTTCGTCTTCAAAACTTCGCAGTTGGCGGTTTTTGCTTCATCTTCAAATATTGATAGTTGGCAACTTTCGCTTCAACTTCAAAAGTTGACAGTTGATGACTTCAGTTCATCTTCAAAAGTTGGCGGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAATGAATCTGATGACGATCACTGTAGGCAAATCTCGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAAGAGTGCATCGCTGTAGGCAAATATGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGAAGTGCATCACTGTAGCCGATCCAAGAGATCATCAAACCAACAAGCCGATCCAAGAGATCATCAAGCCAACAGGTCGATCTAA

Coding sequence (CDS)

ATGCCACTTAGACAGAGTCAAAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCCAAAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGTCGCTCCAAGAAAACCCAACACGAAGGCAACCAAACTCTTGTCATTGCAAACAAGATGCTGAGACACATGACAAAATCTGCTCAACTTGAAATTGCAACTGCAAAAAATATGATGCTTGGCAAATTCATCTCTCTTTCTCAGCAACCAAATGAAACATCGAGTCTTGACGTAATGTCTGTTATGATGACTGGTGCAGGAACTAGTGAAGAATGGATGGCTGAAGTTGAGAAGAAAATTAGCATGTTACTGAAGATTGTTGAAGAGAAAGACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCGCTGAATCAAGAGACAAATCTCAAGATACAGTCAATCTTGTCAGTGATAAAGGTAAAGGAAATACTGTCATGACTCGTCAGAAGAAACAAAGACGACATCTCGTTCAAAAAGGATGTTGCTCATCCAAAAGAGTGAATAAACATCGAAGACAAAAGAATCTAAGGAAACCCAAACTTGAGGAAAAGAGAAATCAAGATCCTTCTCAACATTGTCAACTAGTAACCTTAAAAGAATCATCCTCGAGAAATTTTCATCCCATCAAGAAAATGGAAGAAAATTTTGCAAGTTCATGTTATATCAATGTAGAAGAAGATGGCGATTCAAAGGAAGTCGAGCAAAGAACTTCTATCTTCGATCGCATTGAGCCTTCAACTACTCGACCTTCGGTCTTCCAAAGAATGAGTATGGCTGCAACAGAAGAAGAAACTCAAAGCTTGACTTCCACCATCACTCGACATTCAGCCTTCCAAAGGCTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTCAACAACTGTTTTTTATCGCCTCAAAGTGACAAGCAACCAACATGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAATAAACAATGACAATAAGCTTCATAGTACCACGCCGTCACGTATGAAGAGGAAGTTTTTTGTTCTCATAAACACAGAAGGTTCCTTGAAGGATTCGTTGTCGCTTCAGCTTCAAAAGTTGACAGTCGGCGACTTCACTGCAATTTTAAAAGTTGACGGTTGGCGACTTTTGCTTCATCTTCAAAAGTTGACGGTTGGCAGTCTCACTTCTTTTTCAAAAGTTGACAGCTGGCGGCTTCGCTTCGTCTTCAAAACTTCGCAGTTGGCGGTTTTTGCTTCATCTTCAAATATTGATAGTTGGCAACTTTCGCTTCAACTTCAAAAGTTGACAGTTGATGACTTCAGTTCATCTTCAAAAGTTGGCGGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAATGAATCTGATGACGATCACTGTAGGCAAATCTCGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAAGAGTGCATCGCTGTAGGCAAATATGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGAAGTGCATCACTGTAGCCGATCCAAGAGATCATCAAACCAACAAGCCGATCCAAGAGATCATCAAGCCAACAGGTCGATCTAA

Protein sequence

MPLRQSQRTQSPEHSARVQSRQKPKSPKNSEGFEIQNSKDSRLRSRSKKTQHEGNQTLVIANKMLRHMTKSAQLEIATAKNMMLGKFISLSQQPNETSSLDVMSVMMTGAGTSEEWMAEVEKKISMLLKIVEEKDYEIASLKSQMESRDAAESRDKSQDTVNLVSDKGKGNTVMTRQKKQRRHLVQKGCCSSKRVNKHRRQKNLRKPKLEEKRNQDPSQHCQLVTLKESSSRNFHPIKKMEENFASSCYINVEEDGDSKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSLTSTITRHSAFQRLSVSTSRKCRPSTTVFYRLKVTSNQHERKVDNSEVKLFDEINNDNKLHSTTPSRMKRKFFVLINTEGSLKDSLSLQLQKLTVGDFTAILKVDGWRLLLHLQKLTVGSLTSFSKVDSWRLRFVFKTSQLAVFASSSNIDSWQLSLQLQKLTVDDFSSSSKVGGYYSHQSDWSRQVVKSLQMNLMTITVGKSRDYPCRLLRSPNKMGTGLARVHRCRQIWLLRSPNKMGTGLAEVHHCSRSKRSSNQQADPRDHQANRSI

Homology

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BLAST of Spg010421 vs. NCBI nr
Match: KAA0063700.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 6.9e-32
Identity = 138/381 (36.22%), Postives = 190/381 (49.87%), Query Frame = 0


Query: 101 DVMSVMMTGAGTSEEWMAEVEKKISMLLKIVEEKDYEIASLKSQMESRDAAESRDK---- 160
           ++MSVM+T   TSE  MAE+EKK++ML+K+VEE++Y IASLK+ ++SRDAAES  K    
Sbjct: 5   NIMSVMVTDVDTSENRMAELEKKVNMLMKVVEEREYAIASLKNHIKSRDAAESSHKHTIK 64

Query: 161 -------------SQDTVNLVS-------------------------------------- 220
                         Q++ ++ S                                      
Sbjct: 65  NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTSSLYSKPYTKMIDN 124

Query: 221 --------------DKGKGN-------------TVMTRQKKQRRHLVQ--KG----CCSS 280
                           GKGN             T  TR     +  V+  KG    C S 
Sbjct: 125 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDCISH 184

Query: 281 KRVNKHRRQKNLRKPKLEEKRNQDPSQHCQLVTLKESSSRNF---HP------------- 340
           K+  K RR K +   K  + +++D  Q  + +TL E   R+F   HP             
Sbjct: 185 KK--KGRRNKKIWNLKPIKGKDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVIACHVAS 244

Query: 341 IKKMEENFASSCYINVEEDGDSKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSL 378
           I ++  N+ SS     EE  +S E+++R  +FDRI+  TTR SVFQR+S A  EEE Q  
Sbjct: 245 IVEVNNNYGSS-----EEVDNSNEIKKRIYVFDRIKSLTTRSSVFQRLSKATREEENQCP 304

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BLAST of Spg010421 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 4.5e-31
Identity = 107/242 (44.21%), Postives = 149/242 (61.57%), Query Frame = 0


Query: 157 SQDTVNLVSDKGKGNTVMTRQKKQRRHLVQ----------KGCCSSKRVNKHRRQKNLRK 216
           SQ+    + D+G+   V+  +K+++   VQ          KG  S K+  K RR K + K
Sbjct: 5   SQNKEEPIEDEGEEWIVVAHKKERQTSSVQTKSHFHQKHSKGNISHKK--KGRRNKKMWK 64

Query: 217 PKLEEKRNQDPSQHCQLVTLKESSSRNF---HPIKKMEENFASSC--------YINVEED 276
           PK  + +++D  Q  Q +TL E   R+F   HP + +E     +         Y + EE 
Sbjct: 65  PKPIKGKDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEV 124

Query: 277 GDSKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSLTSTITRHSAFQRLSVSTSR 336
            +S E++QRTS+FDRI+P TTR SVFQR+SMA  EEE Q  TST  R SAF+RLS+STS+
Sbjct: 125 DNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSK 184

Query: 337 KCRPSTTVFYRLKVTSNQHERKVDNSEVKLFDEINNDNKLHSTTPSRMKRKFFVLINTEG 378
           K RPST+ F RLK+T++Q +R++ + + K F E N+D+K+HS  PSRMKRK  V INTEG
Sbjct: 185 KHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEG 244

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BLAST of Spg010421 vs. NCBI nr
Match: KAA0061331.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-30
Identity = 136/385 (35.32%), Postives = 194/385 (50.39%), Query Frame = 0


Query: 70  KSAQLEIATAKNMMLGKFISLSQQPNETSSLDVMSVMMTGAGTSEEWMAEVEKKISMLLK 129
           +S +  I   +N +     S S +  + +  DVM  MM    T+E  MAE+E+K++ L+K
Sbjct: 2   ESPKAGIVLKENPLYDNSDSASSKSKKEAHPDVMFAMMANI-TAEAVMAEMERKVNFLMK 61

Query: 130 IVEEKDYEIASLKSQMESRDAAESRDKSQDTVNLVSDKGKGNTVMTRQKKQRRHLV---- 189
           +VEE+D+EI +L+ QM++R+ AES   SQ  V   +DKGK N V   Q +Q+   V    
Sbjct: 62  VVEERDHEITTLREQMQTRETAES---SQTPVVKATDKGK-NAVQDNQPQQQSVSVASLS 121

Query: 190 --------------QKGCCS----------SKR--------------------------- 249
                         Q G  S          +KR                           
Sbjct: 122 VQQLHDMIANSIRAQYGGPSQTSFMYSKSYTKRIDNLRMPLGIKSRPTSQAVRLKLKSKC 181

Query: 250 ------VNKH-----RRQKNLRKPKLEEKRNQDPSQHCQLVTLKESSSRNF---HPIKKM 309
                 VNK+     R    L KP    K       H + V  ++   R+F   HP + +
Sbjct: 182 FRVYDGVNKYQTTEGRANHRLHKPMESSKPGLQRQAH-RTVCSRDVHLRSFLEDHPEEIL 241

Query: 310 EENFASSC--------YINVEEDGDSKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEE 369
           E     +         Y + EE  +S E++Q+TS+FDRI+P TTR S+FQR+SMA  +EE
Sbjct: 242 EVTACHTASIVEVDNNYGSYEEVDNSNEIKQKTSVFDRIKPLTTRSSIFQRLSMATKKEE 301

Query: 370 TQSLTSTITRHSAFQRLSVSTSRKCRPSTTVFYRLKVTSNQHERKVDNSEVKLFDEINND 378
            Q  T T TR SAF+RLS+S S+K RP+T+ F RLK+T+ Q +R++ + + K F E N+D
Sbjct: 302 NQCPTPTYTRTSAFKRLSISISKKDRPATSAFDRLKITNVQQQREMKSLKAKPFHEENDD 361

[Close]

BLAST of Spg010421 vs. NCBI nr
Match: TYK27425.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-30
Identity = 109/243 (44.86%), Postives = 148/243 (60.91%), Query Frame = 0


Query: 157 SQDTVNLVSDKGKGNTVMTRQKKQRRHLVQ----------KGCCSSKRVNKHRRQKNLRK 216
           SQ+    + D+GK   V+T +K+++   +Q          KG    K+  K RR K +RK
Sbjct: 252 SQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKK--KGRRNKKMRK 311

Query: 217 PKLEEKRNQDPSQHCQLVTLKESSSRNF---HPIKKMEENFASSCYINVEEDGD------ 276
           PK  + +++D  Q  Q +TL E   R F   HP + +E     +  I VE D +      
Sbjct: 312 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSI-VEVDNNQVSSKE 371

Query: 277 ---SKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSLTSTITRHSAFQRLSVSTS 336
              S E+++RTSIFDRI+PSTTR SVFQR+SMA  EEE Q  TS  TR SAF+RLS+STS
Sbjct: 372 VDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTS 431

Query: 337 RKCRPSTTVFYRLKVTSNQHERKVDNSEVKLFDEINNDNKLHSTTPSRMKRKFFVLINTE 378
           +K RPST+VF RLK+T++Q +R+  + + K F E N+D+K+HS  PS MKR   V INTE
Sbjct: 432 KKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTE 491

[Close]

BLAST of Spg010421 vs. NCBI nr
Match: KAA0062458.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-30
Identity = 109/243 (44.86%), Postives = 148/243 (60.91%), Query Frame = 0


Query: 157 SQDTVNLVSDKGKGNTVMTRQKKQRRHLVQ----------KGCCSSKRVNKHRRQKNLRK 216
           SQ+    + D+GK   V+T +K+++   +Q          KG    K+  K RR K +RK
Sbjct: 345 SQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKK--KGRRNKKMRK 404

Query: 217 PKLEEKRNQDPSQHCQLVTLKESSSRNF---HPIKKMEENFASSCYINVEEDGD------ 276
           PK  + +++D  Q  Q +TL E   R F   HP + +E     +  I VE D +      
Sbjct: 405 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSI-VEVDNNQVSSKE 464

Query: 277 ---SKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSLTSTITRHSAFQRLSVSTS 336
              S E+++RTSIFDRI+PSTTR SVFQR+SMA  EEE Q  TS  TR SAF+RLS+STS
Sbjct: 465 VDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTS 524

Query: 337 RKCRPSTTVFYRLKVTSNQHERKVDNSEVKLFDEINNDNKLHSTTPSRMKRKFFVLINTE 378
           +K RPST+VF RLK+T++Q +R+  + + K F E N+D+K+HS  PS MKR   V INTE
Sbjct: 525 KKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTE 584

[Close]

BLAST of Spg010421 vs. ExPASy TrEMBL
Match: A0A5A7V935 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002200 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-32
Identity = 138/381 (36.22%), Postives = 190/381 (49.87%), Query Frame = 0


Query: 101 DVMSVMMTGAGTSEEWMAEVEKKISMLLKIVEEKDYEIASLKSQMESRDAAESRDK---- 160
           ++MSVM+T   TSE  MAE+EKK++ML+K+VEE++Y IASLK+ ++SRDAAES  K    
Sbjct: 5   NIMSVMVTDVDTSENRMAELEKKVNMLMKVVEEREYAIASLKNHIKSRDAAESSHKHTIK 64

Query: 161 -------------SQDTVNLVS-------------------------------------- 220
                         Q++ ++ S                                      
Sbjct: 65  NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTSSLYSKPYTKMIDN 124

Query: 221 --------------DKGKGN-------------TVMTRQKKQRRHLVQ--KG----CCSS 280
                           GKGN             T  TR     +  V+  KG    C S 
Sbjct: 125 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDCISH 184

Query: 281 KRVNKHRRQKNLRKPKLEEKRNQDPSQHCQLVTLKESSSRNF---HP------------- 340
           K+  K RR K +   K  + +++D  Q  + +TL E   R+F   HP             
Sbjct: 185 KK--KGRRNKKIWNLKPIKGKDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVIACHVAS 244

Query: 341 IKKMEENFASSCYINVEEDGDSKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSL 378
           I ++  N+ SS     EE  +S E+++R  +FDRI+  TTR SVFQR+S A  EEE Q  
Sbjct: 245 IVEVNNNYGSS-----EEVDNSNEIKKRIYVFDRIKSLTTRSSVFQRLSKATREEENQCP 304

[Close]

BLAST of Spg010421 vs. ExPASy TrEMBL
Match: A0A5A7V6H5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00040 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.3e-31
Identity = 136/385 (35.32%), Postives = 194/385 (50.39%), Query Frame = 0


Query: 70  KSAQLEIATAKNMMLGKFISLSQQPNETSSLDVMSVMMTGAGTSEEWMAEVEKKISMLLK 129
           +S +  I   +N +     S S +  + +  DVM  MM    T+E  MAE+E+K++ L+K
Sbjct: 2   ESPKAGIVLKENPLYDNSDSASSKSKKEAHPDVMFAMMANI-TAEAVMAEMERKVNFLMK 61

Query: 130 IVEEKDYEIASLKSQMESRDAAESRDKSQDTVNLVSDKGKGNTVMTRQKKQRRHLV---- 189
           +VEE+D+EI +L+ QM++R+ AES   SQ  V   +DKGK N V   Q +Q+   V    
Sbjct: 62  VVEERDHEITTLREQMQTRETAES---SQTPVVKATDKGK-NAVQDNQPQQQSVSVASLS 121

Query: 190 --------------QKGCCS----------SKR--------------------------- 249
                         Q G  S          +KR                           
Sbjct: 122 VQQLHDMIANSIRAQYGGPSQTSFMYSKSYTKRIDNLRMPLGIKSRPTSQAVRLKLKSKC 181

Query: 250 ------VNKH-----RRQKNLRKPKLEEKRNQDPSQHCQLVTLKESSSRNF---HPIKKM 309
                 VNK+     R    L KP    K       H + V  ++   R+F   HP + +
Sbjct: 182 FRVYDGVNKYQTTEGRANHRLHKPMESSKPGLQRQAH-RTVCSRDVHLRSFLEDHPEEIL 241

Query: 310 EENFASSC--------YINVEEDGDSKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEE 369
           E     +         Y + EE  +S E++Q+TS+FDRI+P TTR S+FQR+SMA  +EE
Sbjct: 242 EVTACHTASIVEVDNNYGSYEEVDNSNEIKQKTSVFDRIKPLTTRSSIFQRLSMATKKEE 301

Query: 370 TQSLTSTITRHSAFQRLSVSTSRKCRPSTTVFYRLKVTSNQHERKVDNSEVKLFDEINND 378
            Q  T T TR SAF+RLS+S S+K RP+T+ F RLK+T+ Q +R++ + + K F E N+D
Sbjct: 302 NQCPTPTYTRTSAFKRLSISISKKDRPATSAFDRLKITNVQQQREMKSLKAKPFHEENDD 361

[Close]

BLAST of Spg010421 vs. ExPASy TrEMBL
Match: A0A5D3DVW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001190 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-30
Identity = 109/243 (44.86%), Postives = 148/243 (60.91%), Query Frame = 0


Query: 157 SQDTVNLVSDKGKGNTVMTRQKKQRRHLVQ----------KGCCSSKRVNKHRRQKNLRK 216
           SQ+    + D+GK   V+T +K+++   +Q          KG    K+  K RR K +RK
Sbjct: 252 SQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKK--KGRRNKKMRK 311

Query: 217 PKLEEKRNQDPSQHCQLVTLKESSSRNF---HPIKKMEENFASSCYINVEEDGD------ 276
           PK  + +++D  Q  Q +TL E   R F   HP + +E     +  I VE D +      
Sbjct: 312 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSI-VEVDNNQVSSKE 371

Query: 277 ---SKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSLTSTITRHSAFQRLSVSTS 336
              S E+++RTSIFDRI+PSTTR SVFQR+SMA  EEE Q  TS  TR SAF+RLS+STS
Sbjct: 372 VDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTS 431

Query: 337 RKCRPSTTVFYRLKVTSNQHERKVDNSEVKLFDEINNDNKLHSTTPSRMKRKFFVLINTE 378
           +K RPST+VF RLK+T++Q +R+  + + K F E N+D+K+HS  PS MKR   V INTE
Sbjct: 432 KKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTE 491

[Close]

BLAST of Spg010421 vs. ExPASy TrEMBL
Match: A0A5A7V4E9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00430 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-30
Identity = 109/243 (44.86%), Postives = 148/243 (60.91%), Query Frame = 0


Query: 157 SQDTVNLVSDKGKGNTVMTRQKKQRRHLVQ----------KGCCSSKRVNKHRRQKNLRK 216
           SQ+    + D+GK   V+T +K+++   +Q          KG    K+  K RR K +RK
Sbjct: 345 SQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKK--KGRRNKKMRK 404

Query: 217 PKLEEKRNQDPSQHCQLVTLKESSSRNF---HPIKKMEENFASSCYINVEEDGD------ 276
           PK  + +++D  Q  Q +TL E   R F   HP + +E     +  I VE D +      
Sbjct: 405 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSI-VEVDNNQVSSKE 464

Query: 277 ---SKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSLTSTITRHSAFQRLSVSTS 336
              S E+++RTSIFDRI+PSTTR SVFQR+SMA  EEE Q  TS  TR SAF+RLS+STS
Sbjct: 465 VDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSISTS 524

Query: 337 RKCRPSTTVFYRLKVTSNQHERKVDNSEVKLFDEINNDNKLHSTTPSRMKRKFFVLINTE 378
           +K RPST+VF RLK+T++Q +R+  + + K F E N+D+K+HS  PS MKR   V INTE
Sbjct: 525 KKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKRTLSVDINTE 584

[Close]

BLAST of Spg010421 vs. ExPASy TrEMBL
Match: A0A5D3DU03 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G00150 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-30
Identity = 135/378 (35.71%), Postives = 187/378 (49.47%), Query Frame = 0


Query: 101 DVMSVMMTGAGTSEEWMAEVEKKISMLLKIVEEKDYEIASLKSQMESRDAAESRDK---- 160
           ++MSVM+T   TSE  MAE+EKK++ML+K+VEE++Y IASLK+ ++SRDAAES  K    
Sbjct: 5   NIMSVMVTDVDTSENRMAELEKKVNMLMKVVEEREYAIASLKNHIKSRDAAESSHKHTIK 64

Query: 161 -------------SQDTVNLVS-------------------------------------- 220
                         Q++ ++ S                                      
Sbjct: 65  NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTSSLYSKPYTKMIDN 124

Query: 221 --------------DKGKGN-------------TVMTRQKKQRRHLVQ--KG----CCSS 280
                           GKGN             T  TR     +  V+  KG    C S 
Sbjct: 125 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDCISH 184

Query: 281 KRVNKHRRQKNLRKPKLEEKRNQDPSQHCQLVTLKESSSRNF---HP------------- 340
           K+  K RR K +   K  + +++D  Q  + +TL E   R+F   HP             
Sbjct: 185 KK--KGRRNKKIWNLKPIKGKDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVIACHVAS 244

Query: 341 IKKMEENFASSCYINVEEDGDSKEVEQRTSIFDRIEPSTTRPSVFQRMSMAATEEETQSL 375
           I ++  N+ SS     EE  +S E+++R  +FDRI+  TTR SVFQR+S A  EEE Q  
Sbjct: 245 IVEVNNNYGSS-----EEVDNSNEIKKRIYVFDRIKSLTTRSSVFQRLSKATREEENQCP 304

The following BLAST results are available for this feature:

BLAST of Spg010421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063700.1	6.9e-32	36.22	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	4.5e-31	44.21	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0061331.1	1.3e-30	35.32	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gyp...	[more]
TYK27425.1	2.2e-30	44.86	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0062458.1	2.2e-30	44.86	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg010421 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V935	3.4e-32	36.22	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V6H5	6.3e-31	35.32	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DVW2	1.1e-30	44.86	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V4E9	1.1e-30	44.86	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DU03	1.4e-30	35.71	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg010421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 538..566
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 542..566
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010421.1	Spg010421.1	mRNA