Spg010119 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010119
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold7: 7821447 .. 7825041 (-)
RNA-Seq Expression	Spg010119
Synteny	Spg010119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTACTGCCCATTGGTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGTCAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAACACCTAAAGAGTCAAATTGAGAACCAACATATTGCCGAATCAAGTCAAACCCGAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTACAAGATGATCAACCACAGTGTTTTGCTTCGGTTGCTTCACTATCCATCCAACAGCTCCAAGATATAATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCAAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCGAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGTGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTTGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTTGAAAGAGAGTTTTTGAATCGCTTCTATAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAATACTGAACAACGAAAGGGTGAACTTGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCACCTTTGAGGAACTAGCAACTCGCGCTCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGATCTTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGACGAAGAGACTATAGAAGAATCTAGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACAAATGGAATGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCGCTGATGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAAGACTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCGACCTTGATGAAATAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAGACTTCAACCCAAGAGGAAAAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCTTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACTTTGCAACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAGCCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACGAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACTGCGGCGAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATCTTGAACTACGTTATGACTTGATCCCTGTTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCGATCTCTATAAACAAAAAAAAAAAAAAGAGGGTGCAACAAATATTGAAGCATGACAATACAAATCGAAGAAATTCTTTAGTACTGGGGGCAACACAACAAATTGAAGTTGTACACCGTTATAAATGTGAAGCTACGAGTTTGATGAATGAAAGAAGACGTCATTCCTCCAAGTTCAATGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGCTCCCCCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTCCTCACGCGCTTCACTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACTCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCAGTTCCTTCTCTCAAGTTCAAAGGTTCTTACGCGTTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGTTTCGCTGCAGTTCCTTCTCCCCCAAGTTCGAAGGTTCTCACGCGTTCCGCTGCAGTTCCTTCTCTCAAAGTTCGAGGGTCCTTACACTGTACGCTATTGTATTGTTCCTTCTCAAGGTTCGAAGGTTATTCGTTGTACTCTGCTGCTTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCTTCCAAGTGCGAAGGATTTTATGTTGTACGCTACTGCGTTGTTCCCTCTTCTCTCAAGTTTGAAGGTTCGCATGGCGTTGCTTCGCTAGTCATTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTTTAAGTTTGAAAGTTCGCACGTTGTGCTGCTGCGCGCTGCTCCTTTCTCTCACCAAAGTTCGAGGGTTTTGACGTTGCGCTGCTTCTTTCACCAAGTTCGAAGGTTCTCACGCTGCGTTGCTTCCTTCTCCAAATTCGAAGGTTGTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAGTTCAAAAGTTCACCCGCTGTATGCTGCTTCGCAGCTAGTTCTTCTCCAAGTTCGAAGGTTCGCACGTTGTACGCTGCTTTGCTGTTGTTCCCTCTTCAAGTTTGAAGGTTCACGTGGCGTTACTTCGCTGTTCATTCTCTAAGTTCGAAGGTTCTAACGCTATGCTGATTCCTTCTCCACGTTCGAAGGTTCTCATGCTACGCTGTTTTGCTGTTCCTTCTCCAAGTTTGAAGGTTCTGATTTGCTGAAAGACGTGGCAACAGTAATGGAGCCCAAGTGGGAATGA

mRNA sequence

ATGGGTTCTACTGCCCATTGGTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGTCAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAACACCTAAAGAAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAGCCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACGAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACTGCGGCGAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGCTCCCCCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTCCTCACGCGCTTCACTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACTCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCAGTTCCTTCTCTCAAGTTCAAAGGTTCTTACGCGTTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGTTTCGCTGCAGTTCCTTCTCCCCCAAGTTCGAAGGTTCTCACGCGTTCCGCTGCAGTTCCTTCTCTCAAAGTTCGAGGGTCCTTACACTGTACGCTATTGTATTGTTCCTTCTCAAGGTTCGAAGGTTATTCGTTGTACTCTGCTGCTTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCTTCCAAGTGCGAAGGATTTTATGTTGTACGCTACTGCGTTGTTCCCTCTTCTCTCAAGTTTGAAGTTCGCACGTTGTGCTGCTGCGCGCTGCTCCTTTCTCTCACCAAAGTTCGAGGGTTTTGACGTTGCGCTGCTTCTTTCACCAAGTTCGAAGGTTCTCACGCTGCGTTGCTTCCTTCTCCAAATTCGAAGGTTGTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAGTTCAAAAGTTCACCCGCTTTTGAAGGTTCACGTTCTCATGCTACGCTGTTTTGCTGTTCCTTCTCCAAGTTTGAAGGTTCTGATTTGCTGAAAGACGTGGCAACAGTAATGGAGCCCAAGTGGGAATGA

Coding sequence (CDS)

ATGGGTTCTACTGCCCATTGGTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGTCAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAACACCTAAAGAAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAGCCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACGAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACTGCGGCGAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGCTCCCCCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTCCTCACGCGCTTCACTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACTCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCAGTTCCTTCTCTCAAGTTCAAAGGTTCTTACGCGTTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGTTTCGCTGCAGTTCCTTCTCCCCCAAGTTCGAAGGTTCTCACGCGTTCCGCTGCAGTTCCTTCTCTCAAAGTTCGAGGGTCCTTACACTGTACGCTATTGTATTGTTCCTTCTCAAGGTTCGAAGGTTATTCGTTGTACTCTGCTGCTTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCTTCCAAGTGCGAAGGATTTTATGTTGTACGCTACTGCGTTGTTCCCTCTTCTCTCAAGTTTGAAGTTCGCACGTTGTGCTGCTGCGCGCTGCTCCTTTCTCTCACCAAAGTTCGAGGGTTTTGACGTTGCGCTGCTTCTTTCACCAAGTTCGAAGGTTCTCACGCTGCGTTGCTTCCTTCTCCAAATTCGAAGGTTGTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAGTTCAAAAGTTCACCCGCTTTTGAAGGTTCACGTTCTCATGCTACGCTGTTTTGCTGTTCCTTCTCCAAGTTTGAAGGTTCTGATTTGCTGAAAGACGTGGCAACAGTAATGGAGCCCAAGTGGGAATGA

Protein sequence

MGSTAHWCFNELTLQEDKASIVAGQETTLQGAYTNDKFLVKYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSLKPQVRCFTHPKFVAPPSSSSKVLTRFVGVPSLQVRRSSRASLEFLLPKFEGSHSFRCSSFSPSSKVLTRFAPVPSLKFKGSYAFRWSSFSPSSKVLTRFAAVPSLKFEGSHAVSLQFLLPQVRRFSRVPLQFLLSKFEGPYTVRYCIVPSQGSKVIRCTLLLCSFSKFEGSQLYDCYVVPLPSAKDFMLYATALFPLLSSLKFARCAAARCSFLSPKFEGFDVALLLSPSSKVLTLRCFLLQIRRLSYCAATLLPSPNSKVLILRCYVASFSKFKSSPAFEGSRSHATLFCCSFSKFEGSDLLKDVATVMEPKWE

Homology

[Close]

BLAST of Spg010119 vs. NCBI nr
Match: KAA0063719.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 5.7e-36
Identity = 98/188 (52.13%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 41  KYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKG 100
           K     +P   I          +E+   E+ E       +I E D+  +  K+VDNS + 
Sbjct: 134 KDEDFLQPRQSITLAEFLPRSFLEDHPKEILEVTACHTTSIAEVDNNYDSYKEVDNSNEI 193

Query: 101 EQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPST 160
           +QRTSVFDRIKP TTR SVFQR+SMA  +EENQCPTST+ R S F+RLS+STSKK +PST
Sbjct: 194 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPST 253

Query: 161 SVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGS--LKP 220
           S FD LK+TNDQ +R+M  L+ K F E N  +K+ S +PSRMKRK SV INTEGS  LKP
Sbjct: 254 SAFDRLKMTNDQQQREMKFLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTLKP 313

Query: 221 QVRCFTHP 227
           +   FT+P
Sbjct: 314 RFIIFTNP 321

[Close]

BLAST of Spg010119 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 7.4e-36
Identity = 96/182 (52.75%), Postives = 124/182 (68.13%), Query Frame = 0


Query: 47  EPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSV 106
           +P   I          +E+   E+ E       +I + D+  +  ++VDNS + +QRTSV
Sbjct: 75  QPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSV 134

Query: 107 FDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCL 166
           FDRIKP TTR SVFQR+SMA  +EENQCPTST+ R SAF+RLS+STSKK +PSTS FD L
Sbjct: 135 FDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRL 194

Query: 167 KVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSL--KPQVRCFT 226
           K+TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV INTEGSL  KP+   FT
Sbjct: 195 KMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFT 254

[Close]

BLAST of Spg010119 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 9.7e-36
Identity = 96/188 (51.06%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 41  KYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKG 100
           K     +P   I          +E+   E+ E       +I E D+  +  ++VDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 101 EQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPST 160
           +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQCPTST+ R SAF+RLS+STSKK +PST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 161 SVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSL--KP 220
           S FD LK+TNDQ +R+M +L+ K F E N  +K+ + +PSRMKRK SV INTEGSL  KP
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

Query: 221 QVRCFTHP 227
           +   FT+P
Sbjct: 666 RFIIFTNP 673

[Close]

BLAST of Spg010119 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 9.7e-36
Identity = 96/188 (51.06%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 41  KYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKG 100
           K     +P   I          +E+   E+ E       +I E D+  +  ++VDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 101 EQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPST 160
           +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQCPTST+ R SAF+RLS+STSKK +PST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 161 SVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSL--KP 220
           S FD LK+TNDQ +R+M +L+ K F E N  +K+ + +PSRMKRK SV INTEGSL  KP
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

Query: 221 QVRCFTHP 227
           +   FT+P
Sbjct: 666 RFIIFTNP 673

[Close]

BLAST of Spg010119 vs. NCBI nr
Match: KAA0052018.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 2.8e-35
Identity = 96/188 (51.06%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 41  KYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKG 100
           K     +P   I          +E+   E+ E       +I E D+  +  +++DNS + 
Sbjct: 423 KDEDFLQPRQSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEI 482

Query: 101 EQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPST 160
           +QRTSVFDRIKP TTR SVFQR+SMA  KEENQCPTST+ R SAF+RLS+STSKK +PST
Sbjct: 483 KQRTSVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPST 542

Query: 161 SVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSL--KP 220
           S FD LK+TNDQ +R+M  L+ K F E N  +K+ S +PS MKRK SV INT+GSL  KP
Sbjct: 543 SAFDRLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRVPSHMKRKLSVDINTKGSLTVKP 602

Query: 221 QVRCFTHP 227
           +   FT+P
Sbjct: 603 RFIIFTNP 610

[Close]

BLAST of Spg010119 vs. ExPASy TrEMBL
Match: A0A5A7VDY3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002440 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-36
Identity = 98/188 (52.13%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 41  KYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKG 100
           K     +P   I          +E+   E+ E       +I E D+  +  K+VDNS + 
Sbjct: 134 KDEDFLQPRQSITLAEFLPRSFLEDHPKEILEVTACHTTSIAEVDNNYDSYKEVDNSNEI 193

Query: 101 EQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPST 160
           +QRTSVFDRIKP TTR SVFQR+SMA  +EENQCPTST+ R S F+RLS+STSKK +PST
Sbjct: 194 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPST 253

Query: 161 SVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGS--LKP 220
           S FD LK+TNDQ +R+M  L+ K F E N  +K+ S +PSRMKRK SV INTEGS  LKP
Sbjct: 254 SAFDRLKMTNDQQQREMKFLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTLKP 313

Query: 221 QVRCFTHP 227
           +   FT+P
Sbjct: 314 RFIIFTNP 321

[Close]

BLAST of Spg010119 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.6e-36
Identity = 96/182 (52.75%), Postives = 124/182 (68.13%), Query Frame = 0


Query: 47  EPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSV 106
           +P   I          +E+   E+ E       +I + D+  +  ++VDNS + +QRTSV
Sbjct: 75  QPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSV 134

Query: 107 FDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCL 166
           FDRIKP TTR SVFQR+SMA  +EENQCPTST+ R SAF+RLS+STSKK +PSTS FD L
Sbjct: 135 FDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRL 194

Query: 167 KVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSL--KPQVRCFT 226
           K+TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV INTEGSL  KP+   FT
Sbjct: 195 KMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFT 254

[Close]

BLAST of Spg010119 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.7e-36
Identity = 96/188 (51.06%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 41  KYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKG 100
           K     +P   I          +E+   E+ E       +I E D+  +  ++VDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 101 EQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPST 160
           +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQCPTST+ R SAF+RLS+STSKK +PST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 161 SVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSL--KP 220
           S FD LK+TNDQ +R+M +L+ K F E N  +K+ + +PSRMKRK SV INTEGSL  KP
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

Query: 221 QVRCFTHP 227
           +   FT+P
Sbjct: 666 RFIIFTNP 673

[Close]

BLAST of Spg010119 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.7e-36
Identity = 96/188 (51.06%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 41  KYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKG 100
           K     +P   I          +E+   E+ E       +I E D+  +  ++VDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 101 EQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPST 160
           +QRTSVFDRIKP TTR SVFQR+SMA  +E+NQCPTST+ R SAF+RLS+STSKK +PST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 161 SVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSL--KP 220
           S FD LK+TNDQ +R+M +L+ K F E N  +K+ + +PSRMKRK SV INTEGSL  KP
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

Query: 221 QVRCFTHP 227
           +   FT+P
Sbjct: 666 RFIIFTNP 673

[Close]

BLAST of Spg010119 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-35
Identity = 96/188 (51.06%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 41  KYNPLFEPDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKG 100
           K     +P   I          +E+   E+ E       +I E D   +  ++VDNS + 
Sbjct: 10  KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69

Query: 101 EQRTSVFDRIKPSTTRPSVFQRMSMAATKEENQCPTSTFTRPSAFQRLSVSTSKKSQPST 160
           +QRTS+FDRIKP TTR  VFQR+SMA  +EENQCPTST+ R SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 161 SVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEGSL--KP 220
           S FD LK+TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV INTEGSL  KP
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKP 189

Query: 221 QVRCFTHP 227
           +   FT+P
Sbjct: 190 RFIIFTNP 197

The following BLAST results are available for this feature:

BLAST of Spg010119 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063719.1	5.7e-36	52.13	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	7.4e-36	52.75	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK08944.1	9.7e-36	51.06	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	9.7e-36	51.06	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0052018.1	2.8e-35	51.06	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg010119 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDY3	2.8e-36	52.13	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TQ06	3.6e-36	52.75	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7UI09	4.7e-36	51.06	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	4.7e-36	51.06	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BBF9	1.4e-35	51.06	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Spg010119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010119.1	Spg010119.1	mRNA