Spg010059 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010059
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL30
Location	scaffold7: 8750133 .. 8754933 (-)
RNA-Seq Expression	Spg010059
Synteny	Spg010059

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTAAACCCTACCATCGCAGTCTTCTTGCTCCTCCAAGACTTTACAGAAATCAGATCGAGAGAAGAATCTCTCTGCGCATTTTCTCGTCTTCCTTCTCTTTCATTCAGGTAAATTACGCACTTTCGATTTCTGGTTTCTCTATTTCCTTTCTCGATGTATATATACTTCGCATTATTTCTTGATCGAACTCTATCAATAGTTGTTCATCGCCACTTTCTTTGTTCGATCATTCGGAATTAACTTTGTAGGTTAACTCTTAGTCCGAATTACCTCTTGTCCTTTCTTTTGGGGGAAAATAAATTAGGAGAAGTGAAGAGAGGAGCCTTTTCGTCGAACCCTCTTGATTCCTTCTTCATTTACTTCTTTGATTTTCTTTCCTTTTCTTGTGTGGGTCTGTGATCTTCAAGACTTGAATATGTATCTTTAAGCTTTTAGCTATTTGGAGTTTCGAAACGGGCAATTGAGAGGTTTAACAGTCGAATCGGAAATCCTGAACATGTGAAGTGTGGTTTAGGGTTTAACAATTAAAGCTGTTATTAGTTTAGGATGATGTGTGGGTTTCATTGGATTAACTACCGTTTTAATTTTTATTATTTTTCTATTTTAGAAAATTATTGGTTTGAATAGATGGAGAATTTTAACGACATGCATCTTACTTGCGGACCTCACCTGGTAATTGTTTTGGATAGGTTGAAACATGAGAAGATACAGTCCACCATATCATAGTCCTCCAAGAAGAGGGTATGGTGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGCCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGTCAGGATTTTTCCACTTTCTTTTCAATTCAACTACTATATTGCTCTGTCCATTTTAGGTTCCAGTACTACTATTCAAATTTATTAATTTGTTGTTTTCTCTAACTGATTTTTAAGAATTTGGCTTCTGGTTATGTGATACTTGCAGGCCAGAGGAGCTTAGAGTGCCATTTGAGAGGTTTGGACTTGTTCGAGATGTGTATATTCCGAAAGATTATTACTCAGGGTGAGCATCTTGTGTTTATTTTTCTTATTTGTTTTCCACACCACTCCAACCATGGTATGTGATAGGATTTATTAAGCTGTTATTCAACCTAATTCCTGAACGTGTACTTTTACATTCCTTGTGAGTTAGTTTGATAATGACACGTCTTTTTATATTTAATATCTGGACTTCTGATCACCAATTTGCACAAAGATTTAATCAAATTAACCTCAAACAGGGTTCAGGTGGTAATTTAGGTTTACTGGTTAAGCATCAAGCCAAGCCTTTTGCATTAGAAATAGAGCCTGATTACTCACTCTTTGTTTGATGCTCTCAACGATGTGTCATACTAAGCTTCTTGTCTAGACCAATCATTGATGAAACTTGAAAGTCAAAATATATAGAGTACATTTAAAGCTTTTCTCATTTGCATTTCAAGATGCTATTTTCAGAACAATATCCAACTTTCTTTTTCTCCTGGAAAGAACTCTTATGTGCCTACATGCGCAAGATGAAGTAAACTCTTATGCAATTGACCGTGGACTTTTTAACAACTACTTTTGAACTTGATCAATTCTTGAGGGTGTACATTTGTGCACTGAGTTATAAATTTGTAGATGAAATTTTAGAACATATGGAACATCCAGTTGAGTTTGTTATTTACAGTTAGGGAATGAAGAGGATGAAAAATGTCAAATGAAATTTCACCAGACCTTTACTTTTCTGGGTGAATTTTATTCCCATTTCATAGTGTGTTAAATTTTGAACTGCTTTGTCAGGGGGCATATTTGGTTTGAACTTTGAAGTTAAAACAAGCCCAAGCCCCTATTAATGAAGGGTCTACTACTTTTCACTGCCTAACATATTGCTCATCAAGAATGTAAAGAGTAATATCAAATGAGGGTGTCTCTCTCTGAGGAGATATTAGATAATTACCCCATCAATAGAAGTTGATGAGGAAGAAGATAGATTCTTGAGCAATTGAAGCCAACAAGGTGAAGGTTTTAAGGTTGTGGATTGTTTGTTCAAGTGCTTCATGTGTTTCCAAGTAGTTGAAGAATTTTCAAGTCATGAATTGTTGGTTTCAAGTACTTATATCAAGAAATGTGAAGATTTTTCAAGTCAAGTTACGTTGAATCGAAGTGCTTATAGTTACAAGAATATGAAGATTTTTCAAGTCACTTGCCTCTTTCATGCTTGATTGTAAAGAGAAGGTTAGCCACTAAACTTTGAAATTAGCTGCTTTATGTAACTTCAGCCTCAGCTTTGAAGAAAGCAGTCTGAAGTTAATATTGGATATGAAAAGAAAGCTATTTAGATTATGGTATCCCGAATCCTTTTAGCCATGATAAGCATTCCAATATTATCATTTGGTCTAGTTACCTAGATTTTTGTCCAGAACGAGTTTCTTATTTTCATCATGTAAATTTTGTTTGAATTCTTTGTAGTGAACCTCGAGGATTTGCATTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCCGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGCCAAAGAAGTAGAAGGTAGTTTGTTTGCTCTCTTTTACCTCTCTTTGTTGATTTCAAGAGACTCACTTGCTTCTACTTTCATGCTTGTTTCCTGATGTATATTTATTCTTGTTCACCGTGAAAAAAATTTCCCCTTTTCCACATTGGAACTGACATGCCATACTGTTAAACTGAAAGCAATGTTTAGTTGCAAGTTACTTGTGTTTTACTATTCTTTTTCCCTCTCTGTAGGGGACCCTCTGGCCATGGTGGGCGACGTTCTTATTATGGTATGGGTACAAGTAGTCTCTCTTCAAATTTTACACACCTTTTAAGTGAAAACCTGAACCAAAAAAAAAAAAAAGAAAGAAAGAAAGGTTCAGTGAGAAGACCTCTTATATTCAATTTCTCAATTTTCTAGTTCATGTTATTTGTACATTTTGATTTTTCAAGAAGACTAAGCATTCTCCTTGTTATGGAAATCTTGAACGCTAGAGCTTGAAGCAGCTATCACTGATACAGTAGTATATGAGATTTATTTCCGATATGTTAAATTGCACATTTATTATTCTTCAACTTTTCTTGAGACTTAAGATTGGTGTATATATTTTTCAAAAAAAAAAAAGAAAGAAAGATTGGTGTATATATTTACCTGCCAATGCAATCGAACTTATTTGTAAGCTCTTAGGTAATTGGTCATATGATATCCTTTAAAATGGGCATCCATTTCTGGCTTCTATTAGGTCCAAATATAAGCATATAATAATTATTTTGTATCTGTTAGCATAATGACAGCTCGTTTGTTCTGAAATTGTGAATGTGCAATCTTGTAGGTTTTGTTAATTGATTGAATTAAAAATACAATCCTCCTCTGTATATTTAACTTGTTTGTGGATATGATATTGATAGGTTTCAATTTGTTACTAAACTTCAAGTTACACATACTAAAGCTTGAAATCAAATCAATCCTTATTAACTATTGTACTGGCAAAATTAGTCCATTTGGAATATTTTATTCAATGATCAACGTGGTTTCAGGCAGTGAGTGATATTGATTTTTATTTTTTTTTTTGACAATATAGGGCGTTCTAGATCTCGTTCAGTATCCCGATCACGCTCCCCTCATCATCCTTCAGGTTCAAGAAGTAGATACCGATCAAGGTAATCTATTTAAAACAGAATGTTCATATTTATTTATGCTTCATTTAGTAAATATTCCAAATGTAATCGTCAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGCGACTATTCTGTTTCCCCTAGTAGAAGGCATGCAGACTACCCCAGATCACCAAGAGGTGCTCCTCGGGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCAGGTTATGATAATGCTGATGCTCACGATCACGATGGAAATGGATATCATGAGTAAGTTGAATGATTTACTGATGACTTTTGGACCTGCTTGGTTGTATGTATGGGTGCTTTCATGTTCTGTTGCAACATGAGTTTTTCCCCTAATCTCAGCCATTTTGCAATTTTGACATTATTGCTGTTCGGGATTTTAGTCTGTATTTCTGCATTGCTTATTACATACGCTAGCCTCATGGATGAGAATGTTTTATTCTATTTATTTGGCTATCCTTTCTTTTCTTTAGCAAGTCTGCATTTGAAGGAGAGGATGCACGAGCTAATTGGAGGAGGTCTTCTCCTGGTAGAAGGTCGTCTCCTGGTAGAACATCAAGATCCCCTTCGGGTTCTCGATCCCGCTCTGCGGATGCATCACCAAGACATGGTAGATGATTTTTCCTTGAGAAAACATGGTAGAAGATTATGTAAACCTTCGTTCTAATATTTCAACATTTGTTACTCTGAAGTTAGAATCCACTATCCAGGAAAAATTTCAAGATTGTATTTTGTAAGATGTTCTTAGTGTTCGGGTTTTCAAGACATGGGAAATTTACTTTGCTGTTTGCTCTCATTTTAAGTTCTAAAATTATTATGGCAGACCATCCAACCTCTTGCTACTTTTCTCGATTGTAAACGCTCTTGTTCTTCATCTATCTCGTTTAGCATCATCGACGAGATGGCTATTAATATGAAAACTTTGACTTCTCTACTTTGTAGAGATGATGTTCTTCACCAGCAATTGAT

mRNA sequence

ATGAGAAGATACAGTCCACCATATCATAGTCCTCCAAGAAGAGGGTATGGTGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGCCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGTGAACCTCGAGGATTTGCATTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCCGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGCCAAAGAAGTAGAAGGGGACCCTCTGGCCATGGTGGGCGACGTTCTTATTATGGGCGTTCTAGATCTCGTTCAGTATCCCGATCACGCTCCCCTCATCATCCTTCAGGTTCAAGAAGTAGATACCGATCAAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGCGACTATTCTGTTTCCCCTAGTAGAAGGCATGCAGACTACCCCAGATCACCAAGAGGTGCTCCTCGGGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCAGGTTATGATAATGCTGATGCTCACGATCACGATGGAAATGGATATCATGACAAGTCTGCATTTGAAGGAGAGGATGCACGAGCTAATTGGAGGAGGTCTTCTCCTGGTAGAAGGTCGTCTCCTGGTAGAACATCAAGATCCCCTTCGGGTTCTCGATCCCGCTCTGCGGATGCATCACCAAGACATGGTAGATGA

Coding sequence (CDS)

ATGAGAAGATACAGTCCACCATATCATAGTCCTCCAAGAAGAGGGTATGGTGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGCCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGTGAACCTCGAGGATTTGCATTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCCGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGCCAAAGAAGTAGAAGGGGACCCTCTGGCCATGGTGGGCGACGTTCTTATTATGGGCGTTCTAGATCTCGTTCAGTATCCCGATCACGCTCCCCTCATCATCCTTCAGGTTCAAGAAGTAGATACCGATCAAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGCGACTATTCTGTTTCCCCTAGTAGAAGGCATGCAGACTACCCCAGATCACCAAGAGGTGCTCCTCGGGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCAGGTTATGATAATGCTGATGCTCACGATCACGATGGAAATGGATATCATGACAAGTCTGCATTTGAAGGAGAGGATGCACGAGCTAATTGGAGGAGGTCTTCTCCTGGTAGAAGGTCGTCTCCTGGTAGAACATCAAGATCCCCTTCGGGTTCTCGATCCCGCTCTGCGGATGCATCACCAAGACATGGTAGATGA

Protein sequence

MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCSEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYHDKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR

Homology

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BLAST of Spg010059 vs. NCBI nr
Match: XP_022139086.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Momordica charantia])

HSP 1 Score: 459.1 bits (1180), Expect = 2.5e-125
Identity = 251/288 (87.15%), Postives = 252/288 (87.50%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY GGGGGGGGGYGRRREQ HGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGYGRRREQSHGSLLVRNIPMDCR 60

Query: 61  -------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     EPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYSGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSG+GGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYH 240
           YSPAPRWRGDYSVSPSRRHADYPRSPRGAP ERDGERSQQ YSPGYDNAD HDHDGNGYH
Sbjct: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPHERDGERSQQAYSPGYDNADGHDHDGNGYH 240

Query: 241 DKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           DKSAFEG D RANW RSSPGRRSSPGR SRSPSGSRSRSADASPRHGR
Sbjct: 241 DKSAFEGGDVRANW-RSSPGRRSSPGRISRSPSGSRSRSADASPRHGR 286

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BLAST of Spg010059 vs. NCBI nr
Match: XP_008461655.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461656.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461657.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo])

HSP 1 Score: 437.6 bits (1124), Expect = 7.7e-119
Identity = 241/288 (83.68%), Postives = 245/288 (85.07%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY GGGGGGGGGYGRRREQPHGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGYGRRREQPHGSLLVRNIPMDCR 60

Query: 61  -------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     EPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSG+GGRRS+YGRSRSRSVSRSRSP HPSGSRSRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYH 240
           YSPAPRWRGDYSVSP RRHADYP SPRGAPRERD ERS+QVYSPGYDNAD HD +GNGYH
Sbjct: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDVERSRQVYSPGYDNADEHDQNGNGYH 240

Query: 241 DKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           DKS FEGEDAR NW       RSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 DKSGFEGEDARGNW-------RSSPGRTSRSPSGSRSRSADASPRHGR 280

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BLAST of Spg010059 vs. NCBI nr
Match: XP_038892248.1 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispida])

HSP 1 Score: 437.2 bits (1123), Expect = 1.0e-118
Identity = 242/290 (83.45%), Postives = 249/290 (85.86%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY--GGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY  GGGGGGGGGGYGRRREQPHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60

Query: 61  C--------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           C                           EPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRS 180
           ITVVLAAESRKRPEQMRQRSRRGPSG+GGRRS+YGRSRSRS+SRSRSP HPSGSRSRYRS
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSISRSRSPRHPSGSRSRYRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNG 240
           RSYSPAPRWRGDYSVSPSRRHADYP SPRG PRERD ER++QVYSPGYDNAD H+H+GNG
Sbjct: 181 RSYSPAPRWRGDYSVSPSRRHADYPESPRG-PRERDAERNRQVYSPGYDNADDHNHNGNG 240

Query: 241 YHDKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           YHDKSAFEGEDARANW       RSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 YHDKSAFEGEDARANW-------RSSPGRTSRSPSGSRSRSADASPRHGR 282

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BLAST of Spg010059 vs. NCBI nr
Match: KAG7030730.1 (Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434.5 bits (1116), Expect = 6.5e-118
Identity = 241/290 (83.10%), Postives = 247/290 (85.17%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY--GGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY  GGGGGGGGGGYGRRREQ HGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQSHGSLLVRNIPMD 60

Query: 61  C--------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           C                           +PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRS 180
           ITVVLAAESRKRPEQMRQRSRRGPSG+GGRRSYYGRSRSRSVSRSRSPH PSGS SRYRS
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHRPSGS-SRYRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNG 240
           RSYSPAPRWRG+YS+SP RRHADYPRSPRGAPRERDGERS QVYSPGYDNA  HDHDGNG
Sbjct: 181 RSYSPAPRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHDGNG 240

Query: 241 YHDKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           YHDK+AFEGEDARA+W       RSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 YHDKTAFEGEDARADW-------RSSPGRTSRSPSGSRSRSADASPRHGR 282

[Close]

BLAST of Spg010059 vs. NCBI nr
Match: XP_023515541.1 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.1 bits (1115), Expect = 8.5e-118
Identity = 239/288 (82.99%), Postives = 245/288 (85.07%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQ HGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQSHGSLLVRNIPMDCR 60

Query: 61  -------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     +PRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSG+GGRRSYYGRSRSRSVSRSRSPH PSGS SRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHRPSGS-SRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYH 240
           YSPAPRWRG+YS+SP RRHA+YPRSPRGAP ERDGERS QVYSPGYDNA  HDHDGNGYH
Sbjct: 181 YSPAPRWRGNYSLSPDRRHAEYPRSPRGAPCERDGERSHQVYSPGYDNAGGHDHDGNGYH 240

Query: 241 DKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           DK AFEGEDARA+W       RSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 DKPAFEGEDARADW-------RSSPGRTSRSPSGSRSRSADASPRHGR 280

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BLAST of Spg010059 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-54
Identity = 158/295 (53.56%), Postives = 176/295 (59.66%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIP 60
           MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG     RR   HGSLLVRNIP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGG-----RRGSSHGSLLVRNIP 60

Query: 61  MDC--------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAG 120
           +DC                           +PRGFAFVEFVD Y+A EAQ  MN + FAG
Sbjct: 61  LDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAG 120

Query: 121 REITVVLAAESRKRPEQMRQRSR-RGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSR 180
           REITVV+A+ESRKRPE+MR ++R R     G R   +GRSRSRS+SRSRSP  PS SRSR
Sbjct: 121 REITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSR 180

Query: 181 YRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDN--ADAHD 240
           YRSRSYSPAPR RG                PRG   E D   S++ YSPGY+   A A D
Sbjct: 181 YRSRSYSPAPRRRGG--------------PPRG---EEDENYSRRSYSPGYEGAAAAAPD 240

Query: 241 HDGNG---YHDKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPR 260
            D NG     +K  +E ED R   R             SRSPSGSRSRS + SPR
Sbjct: 241 RDRNGDNEIREKPGYEAEDRRRGGR-----------AVSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of Spg010059 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.8e-16
Identity = 109/296 (36.82%), Postives = 139/296 (46.96%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 62  ------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    +PRGF FV+F+DP +A++A++HM+G    GRE+TV
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS- 181
           V A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS   
Sbjct: 124 VFAEENRKKPTEMRARER-----GGGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDY 183

Query: 182 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQV-----YSPGYDNADAHDHD 241
           YSP PR     S+SP     D  RS   +P   DG R + +      S     +      
Sbjct: 184 YSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSLTPVRGKSRSLSPSPRRSIS 243

Query: 242 GNGYHDKSAFEGEDARANWRRS---SPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
            +    +S     +   + RRS   SP R  SP R+ RS +   +RS   SP  G+
Sbjct: 244 RSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQ 278

[Close]

BLAST of Spg010059 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13
Identity = 101/287 (35.19%), Postives = 129/287 (44.95%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  GG          R      SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRFGGS---------RDSDLPTSLLVRNLRHDCRQ 63

Query: 62  ------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    +PRGF F++F+DP +A+EA++ M+G    GRE+TV
Sbjct: 64  EDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRSY 181
           V A E+RK+P +MR R R      GGR + +   R      SRSP    G RSR RSR Y
Sbjct: 124 VFAEENRKKPTEMRTRDR------GGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGY 183

Query: 182 SPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYHD 241
           +            P++RH     SP+   R  + ERS       Y  +  H    NG   
Sbjct: 184 NS----------PPAKRHQSRSVSPQ--DRRYEKERS-------YSRSPPH----NGSRV 243

Query: 242 KSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           +S   G   R      SP R  SP R +RS +  ++RS    PR  R
Sbjct: 244 RS---GSPGRVKSHSRSPRRSVSP-RKNRSYTPEQARSQSPVPRQSR 244

[Close]

BLAST of Spg010059 vs. ExPASy Swiss-Prot
Match: Q9BRL6 (Serine/arginine-rich splicing factor 8 OS=Homo sapiens OX=9606 GN=SRSF8 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.5e-12
Identity = 82/206 (39.81%), Postives = 99/206 (48.06%), Query Frame = 0


Query: 62  PRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGHGG 121
           PRGFAFV F D  +A +A+  M+G +  GRE+ V +A   R+   + RQ   RG S  GG
Sbjct: 54  PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGG 113

Query: 122 ----RRSYYGRSRS---RSVSRSRSPH-HPSGSRSRYRSRSYSPAPRWRGDYSVSPSRRH 181
                RSY  RSRS   R  SRSR P    S SRSRYR   YS +P  R  YS       
Sbjct: 114 YGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYS------R 173

Query: 182 ADYPRSPRGAPRERDGERSQQVY-SPGYDNADAHDHDGNGYHDKSAFEGEDARANWRRSS 241
           + Y RSP    R R+       Y S GY N+    +  +  H KS        A+  +SS
Sbjct: 174 SRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSS 233

Query: 242 PGRRSSPGRTSRSPSGSRSRSADASP 259
             RRS     SRS S SRS S   SP
Sbjct: 234 SARRSKSSSVSRSRSRSRSSSMTRSP 253

[Close]

BLAST of Spg010059 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-04
Identity = 74/229 (32.31%), Postives = 92/229 (40.17%), Query Frame = 0


Query: 2   RRYS--PPYHSPP--RRGYGGR--GRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNI 61
           R YS  P   SPP  R+GY        P  R +   G  G              LL+RN+
Sbjct: 9   RSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSGPSG--------------LLIRNL 68

Query: 62  PMDC--------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFA 121
           P+D                            EPRGF FV++    +A+EA   MN K   
Sbjct: 69  PLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 128

Query: 122 GREITVVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSR 181
           GREI +V A E+RK P++MR       +G  GR   Y R+  RS  R    H    SRSR
Sbjct: 129 GREIAIVFAEENRKTPQEMRT-----TNGTSGRHGDYKRTSHRSPRRRYRSH----SRSR 188

Query: 182 YRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSP 199
              R  S   + R D   SP RR     RSP   PR     +S+   SP
Sbjct: 189 SPPRRESRHSKVREDDLYSPRRRSRSISRSP--LPRNEREYKSRNCRSP 212

[Close]

BLAST of Spg010059 vs. ExPASy TrEMBL
Match: A0A6J1CBL6 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Momordica charantia OX=3673 GN=LOC111010084 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.2e-125
Identity = 251/288 (87.15%), Postives = 252/288 (87.50%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY GGGGGGGGGYGRRREQ HGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGYGRRREQSHGSLLVRNIPMDCR 60

Query: 61  -------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     EPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYSGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSG+GGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYH 240
           YSPAPRWRGDYSVSPSRRHADYPRSPRGAP ERDGERSQQ YSPGYDNAD HDHDGNGYH
Sbjct: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPHERDGERSQQAYSPGYDNADGHDHDGNGYH 240

Query: 241 DKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           DKSAFEG D RANW RSSPGRRSSPGR SRSPSGSRSRSADASPRHGR
Sbjct: 241 DKSAFEGGDVRANW-RSSPGRRSSPGRISRSPSGSRSRSADASPRHGR 286

[Close]

BLAST of Spg010059 vs. ExPASy TrEMBL
Match: A0A1S3CFP8 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=LOC103500205 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.7e-119
Identity = 241/288 (83.68%), Postives = 245/288 (85.07%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY GGGGGGGGGYGRRREQPHGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY-GGGGGGGGGYGRRREQPHGSLLVRNIPMDCR 60

Query: 61  -------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     EPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSG+GGRRS+YGRSRSRSVSRSRSP HPSGSRSRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYH 240
           YSPAPRWRGDYSVSP RRHADYP SPRGAPRERD ERS+QVYSPGYDNAD HD +GNGYH
Sbjct: 181 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDVERSRQVYSPGYDNADEHDQNGNGYH 240

Query: 241 DKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           DKS FEGEDAR NW       RSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 DKSGFEGEDARGNW-------RSSPGRTSRSPSGSRSRSADASPRHGR 280

[Close]

BLAST of Spg010059 vs. ExPASy TrEMBL
Match: A0A6J1FWZ5 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=3662 GN=LOC111447732 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 6.6e-116
Identity = 236/288 (81.94%), Postives = 242/288 (84.03%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY    GGGGGGYGR+REQ HGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY----GGGGGGYGRQREQSHGSLLVRNIPMDCR 60

Query: 61  -------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     +PRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPSG+GGRRSYYGRSRSRSVSRSRSPH PSGS SRYRSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHRPSGS-SRYRSRS 180

Query: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYH 240
           YSPAPRWRG+YS+SP RRHADYPRSPRGAPRERDGERS QVYSPGYDNA  HDHDGNGYH
Sbjct: 181 YSPAPRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHDGNGYH 240

Query: 241 DKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           DK AFEGEDARA+W       RSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 DKPAFEGEDARADW-------RSSPGRTSRSPSGSRSRSADASPRHGR 276

[Close]

BLAST of Spg010059 vs. ExPASy TrEMBL
Match: A0A6J1JIZ1 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita maxima OX=3661 GN=LOC111485002 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.9e-115
Identity = 240/292 (82.19%), Postives = 244/292 (83.56%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY--GGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY  GGGGGGGGGGYGRRREQPHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIPMD 60

Query: 61  C--------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           C                           +PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRS 180
           I VVLAAESRKRPEQMRQRSRRGPS +GGRRSYYGRSRSRSVSRSRSP HPSGSRSR+RS
Sbjct: 121 IAVVLAAESRKRPEQMRQRSRRGPSDYGGRRSYYGRSRSRSVSRSRSPRHPSGSRSRHRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHD--G 240
           RSYSPAPRWRGDYSVSPSRRHADYPRSPRGA RERDGERS+QVYSPGYDNAD  D D  G
Sbjct: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAARERDGERSRQVYSPGYDNADGPDVDGNG 240

Query: 241 NGYHDKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           NGYHDK AFEGEDARANW       R SP RTSRSPSGSRSRSADASPRHGR
Sbjct: 241 NGYHDKPAFEGEDARANW-------RPSPDRTSRSPSGSRSRSADASPRHGR 285

[Close]

BLAST of Spg010059 vs. ExPASy TrEMBL
Match: A0A6J1H0N2 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=3662 GN=LOC111458935 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 6.2e-114
Identity = 236/290 (81.38%), Postives = 241/290 (83.10%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC- 60
           MRRYSPPYHSPPRRGYGGRGRSPPGRGY   GGGGGGGYGRRREQPHGSLLVRNIPMDC 
Sbjct: 1   MRRYSPPYHSPPRRGYGGRGRSPPGRGY---GGGGGGGYGRRREQPHGSLLVRNIPMDCR 60

Query: 61  -------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT 120
                                     +PRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 
Sbjct: 61  PEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIA 120

Query: 121 VVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS 180
           VVLAAESRKRPEQMRQRSRRGPS +GGRRSYYGRSRSRSVSRSRSP HPSGSRSR+RSRS
Sbjct: 121 VVLAAESRKRPEQMRQRSRRGPSDYGGRRSYYGRSRSRSVSRSRSPRHPSGSRSRHRSRS 180

Query: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHD--GNG 240
           YSPAPRWRGDYSVSPSRRHADYPRSPRGA RERDGER++QVYSPGYDNAD  D D  GNG
Sbjct: 181 YSPAPRWRGDYSVSPSRRHADYPRSPRGAARERDGERNRQVYSPGYDNADGPDVDGNGNG 240

Query: 241 YHDKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           YHDK AFEGEDARANW       R SP RTSRSPSGSRSRSADASPRHGR
Sbjct: 241 YHDKPAFEGEDARANW-------RPSPDRTSRSPSGSRSRSADASPRHGR 280

[Close]

BLAST of Spg010059 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 214.9 bits (546), Expect = 7.6e-56
Identity = 158/295 (53.56%), Postives = 176/295 (59.66%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIP 60
           MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG     RR   HGSLLVRNIP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGG-----RRGSSHGSLLVRNIP 60

Query: 61  MDC--------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAG 120
           +DC                           +PRGFAFVEFVD Y+A EAQ  MN + FAG
Sbjct: 61  LDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAG 120

Query: 121 REITVVLAAESRKRPEQMRQRSR-RGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSR 180
           REITVV+A+ESRKRPE+MR ++R R     G R   +GRSRSRS+SRSRSP  PS SRSR
Sbjct: 121 REITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSR 180

Query: 181 YRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDN--ADAHD 240
           YRSRSYSPAPR RG                PRG   E D   S++ YSPGY+   A A D
Sbjct: 181 YRSRSYSPAPRRRGG--------------PPRG---EEDENYSRRSYSPGYEGAAAAAPD 240

Query: 241 HDGNG---YHDKSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPR 260
            D NG     +K  +E ED R   R             SRSPSGSRSRS + SPR
Sbjct: 241 RDRNGDNEIREKPGYEAEDRRRGGR-----------AVSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of Spg010059 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19
Identity = 91/221 (41.18%), Postives = 112/221 (50.68%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 62  ------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    +PRGF FV+F+DP +A++A++HM+G    GRE+TV
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS- 181
           V A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS   
Sbjct: 124 VFAEENRKKPTEMRARER-----GGGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDY 183

Query: 182 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQV 196
           YSP PR     S+SP     D  RS   +P   DG R + +
Sbjct: 184 YSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSL 203

[Close]

BLAST of Spg010059 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 85.5 bits (210), Expect = 6.9e-17
Identity = 109/296 (36.82%), Postives = 139/296 (46.96%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 62  ------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    +PRGF FV+F+DP +A++A++HM+G    GRE+TV
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRS- 181
           V A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS   
Sbjct: 124 VFAEENRKKPTEMRARER-----GGGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDY 183

Query: 182 YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQV-----YSPGYDNADAHDHD 241
           YSP PR     S+SP     D  RS   +P   DG R + +      S     +      
Sbjct: 184 YSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSLTPVRGKSRSLSPSPRRSIS 243

Query: 242 GNGYHDKSAFEGEDARANWRRS---SPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
            +    +S     +   + RRS   SP R  SP R+ RS +   +RS   SP  G+
Sbjct: 244 RSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQ 278

[Close]

BLAST of Spg010059 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-16
Identity = 110/308 (35.71%), Postives = 140/308 (45.45%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 62  ------------------------------------SEPRGFAFVEFVDPYEASEAQYHM 121
                                                +PRGF FV+F+DP +A++A++HM
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHM 123

Query: 122 NGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHP 181
           +G    GRE+TVV A E+RK+P +MR R R G S    RR    R+  R  SRSRSP  P
Sbjct: 124 DGYLLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDRR----RTPPRYYSRSRSP-PP 183

Query: 182 SGSRSRYRSRS-YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQV-----YS 241
              RSR RS   YSP PR     S+SP     D  RS   +P   DG R + +      S
Sbjct: 184 RRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSLTPVRGKS 243

Query: 242 PGYDNADAHDHDGNGYHDKSAFEGEDARANWRRS---SPGRRSSPGRTSRSPSGSRSRSA 263
                +       +    +S     +   + RRS   SP R  SP R+ RS +   +RS 
Sbjct: 244 RSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSR 291

[Close]

BLAST of Spg010059 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-14
Identity = 101/287 (35.19%), Postives = 129/287 (44.95%), Query Frame = 0


Query: 2   RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDC-- 61
           R Y+P   SPP RGYG RGRSP  RG  GG          R      SLLVRN+  DC  
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRFGGS---------RDSDLPTSLLVRNLRHDCRQ 63

Query: 62  ------------------------SEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 121
                                    +PRGF F++F+DP +A+EA++ M+G    GRE+TV
Sbjct: 64  EDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTV 123

Query: 122 VLAAESRKRPEQMRQRSRRGPSGHGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRSRSY 181
           V A E+RK+P +MR R R      GGR + +   R      SRSP    G RSR RSR Y
Sbjct: 124 VFAEENRKKPTEMRTRDR------GGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGY 183

Query: 182 SPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDNADAHDHDGNGYHD 241
           +            P++RH     SP+   R  + ERS       Y  +  H    NG   
Sbjct: 184 NS----------PPAKRHQSRSVSPQ--DRRYEKERS-------YSRSPPH----NGSRV 243

Query: 242 KSAFEGEDARANWRRSSPGRRSSPGRTSRSPSGSRSRSADASPRHGR 263
           +S   G   R      SP R  SP R +RS +  ++RS    PR  R
Sbjct: 244 RS---GSPGRVKSHSRSPRRSVSP-RKNRSYTPEQARSQSPVPRQSR 244

The following BLAST results are available for this feature:

BLAST of Spg010059 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139086.1	2.5e-125	87.15	serine/arginine-rich SC35-like splicing factor SCL30 [Momordica charantia]	[more]
XP_008461655.1	7.7e-119	83.68	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >...	[more]
XP_038892248.1	1.0e-118	83.45	serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispi...	[more]
KAG7030730.1	6.5e-118	83.10	Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyros...	[more]
XP_023515541.1	8.5e-118	82.99	serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Cucurbita pepo ...	[more]

BLAST of Spg010059 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3X8	1.1e-54	53.56	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q9SEU4	9.8e-16	36.82	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	2.7e-13	35.19	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q9BRL6	6.5e-12	39.81	Serine/arginine-rich splicing factor 8 OS=Homo sapiens OX=9606 GN=SRSF8 PE=1 SV=...	[more]
Q1PDV2	1.0e-04	32.31	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]

BLAST of Spg010059 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBL6	1.2e-125	87.15	serine/arginine-rich SC35-like splicing factor SCL30 OS=Momordica charantia OX=3...	[more]
A0A1S3CFP8	3.7e-119	83.68	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1FWZ5	6.6e-116	81.94	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=36...	[more]
A0A6J1JIZ1	1.9e-115	82.19	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1H0N2	6.2e-114	81.38	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=36...	[more]

BLAST of Spg010059 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55460.1	7.6e-56	53.56	SC35-like splicing factor 30	[more]
AT1G55310.2	1.9e-19	41.18	SC35-like splicing factor 33	[more]
AT1G55310.1	6.9e-17	36.82	SC35-like splicing factor 33	[more]
AT1G55310.3	5.9e-16	35.71	SC35-like splicing factor 33	[more]
AT3G13570.1	1.9e-14	35.19	SC35-like splicing factor 30A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 45..138 e-value: 3.8E-12 score: 48.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 61..94 e-value: 3.0E-7 score: 30.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 39..100 score: 9.814416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..113
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 59..258 coord: 23..59
None	No IPR available	PANTHER	PTHR23147:SF96	OS02G0252100 PROTEIN	coord: 59..258
None	No IPR available	PANTHER	PTHR23147:SF96	OS02G0252100 PROTEIN	coord: 23..59
None	No IPR available	CDD	cd00590	RRM_SF	coord: 50..95 e-value: 5.18316E-9 score: 49.9961
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 44..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010059.1	Spg010059.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding