Spg010024 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg010024
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold7: 9147365 .. 9152016 (+)
RNA-Seq ExpressionSpg010024
SyntenySpg010024
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTGCTCACTACGGGTTCACGCGTGGTGGATCTGCGAGAGAGAGATTGAGAAGGAGGGTTTGGGGAGAGAGAGATATTCGAAGAAAAAAATTACTGGAACGTCGCCGGAGTTGGGGCTAGAGAAGCTGCAACCATCGAGTAGAGAGGAAGGAGATGAGAGTGTTAAAAAAAAAAAAAAGTCGTCGGCGGACAGCGAGCGGTGGTCGCCGGCCGTTGGCCGCCGGCCATGTGTTGAAGAAGAAGACAAGTTCATGAAGAAGAAGGAAGGAAGAAGGAAGGAAGAAGGAAGAGAGAAAAAGAAATTAAAAATAATTAAAAATAATAATATTTTTATTATTGTAATATATTTTTAATTAAATAATTTAAAAAATAATTTTTTAAAATAAAAAAATAGCGCCACGTCATCCACCCGTTAGTTTTAACGGAAAAGATGGATGGAGGGACCAAAATGAAACTAAAACCAAACCTCAGGGACTAAATTGTTGAGTTTGAAAACTCAGGGACCAAAGTGTAACTTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTCCAAAAAAAAAAAAAAGATTCGTAATATTCTTGAAACTAAGGTTTGGAATTTGTATGCAGTTATTAATTTTTAATATATAACAACGTAATAGTATTTTCTATATTTTAAATTTATTTAATGCACGTTATTAATTTTTTTTTTAAGAATAGAATATATTTCTTTTTGTTTACTTATAAAATTTGTAGAAATTATTGCTAAAAATCATTAAAAAAAGCCTAACTAATTACTTTGGATTATAATTAAGTTAAACTACAAGTTTAGTCTTTATAGTTTAAAGTTGTATCAAATAAGTCGTTGAACTTCAAAAAGTGTTTTATTAAGTTCATAAACTTTTAATTTTTGTTTAACAAGTTCTTTTCAATTTTACGTCTATTGAAAGTTTGAAACCACATTATTAACTGGTAGGGAAAAAAACAATTTGTTTTTTGTTTTGTTTTTTTTTTTTTTGATATACCTCTAAGCTTTGGAAGTTAGGTATAAATTAAAACTCTAAACTAATAATTGTATTAATTTAAACTCTAAACTTTCACAAATGAATCAATTTAGACCCTCCATTGATTTATAATTATTTTAACTTGATTTTGTTTAAAATCGAACACAAAATCACCAAAATAAAAATATTATGTCTCAAGATCCTACCAAAATAAAAATACTAGTAACCATAATTATCACTATATTCTTCTTAAATAAATCGAGAAAAATAGAGGTAGATTAGAAGATAAAAAAAACTACTCATATTAATGAAAAAAATGAAAACTACTATCCATTTGATTCTAACCTTTTCTGTAATATTACGTTAATCTTTATTCGTGCATGGCAATTGTTGAGCTTAGCTCAACGATAATTAACATATACTTTCGACAAAAAAATAGATATTCGAATCCCCACCCTAAAATGTTGTTGAACTCAAAAAAAGAAGATCAATAATGCTTTATTGATCTTTAAAGTTGAAAATAAATGTCGTGTACAAGTTGAAGTTTGTTTTTTTGTCAAAATAATAATAATAGTTTAGTTAGAGAGAGCTAGATAAACTTTGCATAAATGTATTATTTGTAAATTCACAAATAATGTTTGAAATCGTATTTGAAATATGTAGACACATAGTTTATACTATAGACAAACTACAAGGTGCAATTTGTAATATTGTCCCTATATGTATATTAATATTAGCTCCACATGTACAAAGAAAATAGGAAACCTTGGGGTGACCATAGCTAGCTACCTTTTAGCTATAAATTAAACCCTTTACTTCAAATAATTGGTTTTAGAAAATTAAAAATTCAAACTATATGACTCATCTAATTGATAATTATAGCACTTATCTTATCATCCCTCTTAAAAAAAAAATAAAAAAAATAAAAAAAAAAAAAAATCTTATCATCATCATATATAAATGTTATTGTTAAAAGCTTTTTTTTTTTTTTTTTTTTGGAAAAGAGTTATTGTTAAAAGCTTTACCATATACAATTATGTTTCAAAAGGATATAAAGACAATAACTATATTGTCAAAAAAAAAAAAAAAAAAGACAATAACTATATATATATAGGATTTCTTCTCAAAAAAAAAAAAATATATAGGATTTTACTGGATAACAATTTCTTAAAAAAAATAAATAAATAGAATTGTTTATCTACTTTTTTTTTTTTACCTTTTAAATAACAGTTTTGTATTTTTTACCTAAACAAAAAGATACAGTTTTTTTAAAATGGACTAAAATTTTAAAATATTTTCAAAAGGTAAGATTACTTAACAAAGAAATTTTAAGAGATTTTTTTTAGTGGGAAATTTAAAAAGTAATTGAATGAATGATTAAATTACCAATTTGATCCCTAAAGTTTTGACTTAATTTCAATTTATTCCAAGTCTTATTTCTAGCTCCTTATGGTTTTAACTTTTTTTTTTTTTTTTGAGAAGAAATACATTTCATTACGCCACAAGGGCAAAAAACTAAGGGTCCGAATCGACCAAAGACAATAACCAACCCGGTTTCACTCAAGCCTATCCTTTTAGCTCTTTTGGCAATACAATCAGCCACCCCATTAATATTTCTAGAAATACAGACAAATTTAACTTCAGAGAAAAAAGACAACAAAGATCTAGTGGCTTCCACCCAAGCTTCCACCTCACCCTAAACTTCAATTTCTTTTTTCACAAGTCTGATTGCTTGGGAACAGTCAGCTTCCACAATTATCTTCCCAAAACCTAATAATTTGGCCATTTTAATTCCCTCCCAGATCGCCATTAATTCAGCTAGAGGAGCTTTGAAGTCAACATTTACATAGGAAGACATTGCCCCAGTCATATCCCCATGTCGCATCCACGTTTATTTCCAAGAAACTCTCAAGCGGGGGAATCCATCGTGCATGGGTCAGTTCATGGGGGCTTCGAGAAACTGAGTTCCCAACAGGCTTCAAATTTGCTTCCTTATATTTCTTTAGGTAATTTACTATCCAATTGCTCCGAAATGACTTCTGGTACAATACTCTGTCCATGAACCACTTTATTTATTTCTGTCACTCCAGATGGCCCAGCTTGTGACTGCAATCAATTCAAGCTCTTCCAATGGCAGAGACGAATTGATTTTCAACCATCTATCTGCAAAGCAATTGTGGAAATTCTCCTCCAGGAACACACGATTACAGGTACTTCTCCATATTTCTTTAGCTCTGGTACACCTGAAAATTATGTGGTCTGTGGATTCAAAATAGTTAGAACACATAGGACATTCAAAATTAGTATCAATACCACTGTTTTTTAAGTTGAAATTAGTGGGGAGATTTTTATTAATCGCTCTCCAACAAAAATGTTTTATTTTAGTTGGAATTTGAAGCTTCCATAGGTTTTCCTATATCGCTCCCATTACATTGCTACTAGAAGAGGCCTCACAAATTTTAGTATTCAAATATAGTTTATATCCGCTCTTTGCAGTATATCTGCCAGTTTGGTCATAGTGTCAAATAAGTCTGTCTTCTAAGTTCAAATTAGTCGAAACTCTTTTGATAACTTCTGAGTCTTCCTCCATAACACAGCTACTTAGTTTACTATAGTTCCAGAAGCCAGATGGATCTATGAAATCAGCTACTCTTTCATTGAGCATCTCCATATTAGTACAGACAGGTTTAAAAGTGGATTCTTTTGGGATCCAAGGATCCTTAAACATGTAAATGGAAAGACCATTACCAACCCTAGATCTTAATCCTTTTTTTTAAGAAGATCTCTTCTCCAAATAAGACTCTTCCACAAGTAAGATGGTTTAGATCCTAGGTTAGCGTCCATTATGTTGCTATTGCTAAAGTAAATGCTTTTTACGAACCAGGCTACTGTTGAATTTGGATTAGATGGAATCCTCCAAGCTTGCTTTGCAATGAGAGCTTGGTTAAAACCCTCCACATCCCTAAAATTCAGACCCCGAAGGCTAAACTTTAACTTTAATTTCTATTAGATCTCTATGGTTTCAGACTTAATTTCAAATTACAAGCGTGAAACGCCAGAAATTTTTATATACAAAATCTTTCCATTTCGAAAATTTAAAGGATAAATTGAAGAGATAACTCTAAAATCTTAATTTTCTAGTACATTTAGGGGGAAAAAAAAAAAAAAGAAAAACTTCATATGAGGCAGTTCTTTTTTGCTCTACCCTGGATCGATGCACACCTGAACGAAGAAGAAAAATCCAGAGCAATCATCATTATCTGGAGCCTTTGGACCGGTCGAAATTCAATTTCTGTGAAGGATAGTAAAGCTTCTTACCAGGAATTGAAGCGGTTCATCATCCGCTTTATTGAAGAAGACGATGGAATCGTCTCGAGACCCTCTCCCTTGTCGTCGAAGAGCCAGGCGAGTCATGAAAGTTGGTCCCCTCTTCCGCCAGGGGTGTGGAAATTGAATAATGTTGATGCCGCTTGGAGGGAAGATCTTAGTTTCGGTGGCGTTGGTTGGTCAATCCCTGACTTTTCAGGATCTTCGATCTGTGCAGGGAGGAGGAAATGTTCGAGTAGGTGGCAAATCAAATCTCATGAGGCTTTGGCTATTTTGGAGGGGCTCAAAGGGGTAGTAAAAGCACCCGAAATCTCCTCATTTCCCTCTGATAATTGA

mRNA sequence

ATGGATCTGCTCACTACGGGTTCACGCGTGATGGCCCAGCTTGTGACTGCAATCAATTCAAGCTCTTCCAATGGCAGAGACGAATTGATTTTCAACCATCTATCTGCAAAGCAATTGTGGAAATTCTCCTCCAGGAACACACGATTACAGGATAGTAAAGCTTCTTACCAGGAATTGAAGCGGTTCATCATCCGCTTTATTGAAGAAGACGATGGAATCGTCTCGAGACCCTCTCCCTTGTCGTCGAAGAGCCAGGCGAGTCATGAAAGTTGGTCCCCTCTTCCGCCAGGGGTGTGGAAATTGAATAATGTTGATGCCGCTTGGAGGGAAGATCTTAGTTTCGGTGGCGTTGGTTGGTCAATCCCTGACTTTTCAGGATCTTCGATCTGTGCAGGGAGGAGGAAATGTTCGAGTAGGTGGCAAATCAAATCTCATGAGGCTTTGGCTATTTTGGAGGGGCTCAAAGGGGTAGTAAAAGCACCCGAAATCTCCTCATTTCCCTCTGATAATTGA

Coding sequence (CDS)

ATGGATCTGCTCACTACGGGTTCACGCGTGATGGCCCAGCTTGTGACTGCAATCAATTCAAGCTCTTCCAATGGCAGAGACGAATTGATTTTCAACCATCTATCTGCAAAGCAATTGTGGAAATTCTCCTCCAGGAACACACGATTACAGGATAGTAAAGCTTCTTACCAGGAATTGAAGCGGTTCATCATCCGCTTTATTGAAGAAGACGATGGAATCGTCTCGAGACCCTCTCCCTTGTCGTCGAAGAGCCAGGCGAGTCATGAAAGTTGGTCCCCTCTTCCGCCAGGGGTGTGGAAATTGAATAATGTTGATGCCGCTTGGAGGGAAGATCTTAGTTTCGGTGGCGTTGGTTGGTCAATCCCTGACTTTTCAGGATCTTCGATCTGTGCAGGGAGGAGGAAATGTTCGAGTAGGTGGCAAATCAAATCTCATGAGGCTTTGGCTATTTTGGAGGGGCTCAAAGGGGTAGTAAAAGCACCCGAAATCTCCTCATTTCCCTCTGATAATTGA

Protein sequence

MDLLTTGSRVMAQLVTAINSSSSNGRDELIFNHLSAKQLWKFSSRNTRLQDSKASYQELKRFIIRFIEEDDGIVSRPSPLSSKSQASHESWSPLPPGVWKLNNVDAAWREDLSFGGVGWSIPDFSGSSICAGRRKCSSRWQIKSHEALAILEGLKGVVKAPEISSFPSDN
Homology
[Close]
BLAST of Spg010024 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 0 

Query: 54  ASYQELKRFIIRFIEEDDGIVSRPSPLSSKSQASHESWSPLPPGVWKLNNVDAAWREDLS 113
           +S+  + + + +F+ E          +  K+  +   W P P  +W L N DA+W +   
Sbjct: 34  SSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTL-NADASWSDSTH 93

Query: 114 FGGVGWSIPDFSGSSICAGRRKCSSRWQIKSHEALAILEGLKGV 158
            GG+GW I  + G  + AG R   +   +K  EA AILEGL+ +
Sbjct: 94  RGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNL 136

[Close]
BLAST of Spg010024 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 40/142 (28.17%), Postives = 66/142 (46.48%), Query Frame = 0 

Query: 27  DELIFNHLSAKQLWKFSSRNTRLQDSKASYQELKRFIIRFIEE--DDGIVSRPSPLSSKS 86
           +E+  + + A Q+W+  +R+   +      Q+L R I+ FI    D G     +  S ++
Sbjct: 29  EEVATSMVIAWQIWESRNRSI-FRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQN 88

Query: 87  QA----SHES-------WSPLPPGVWKLNNVDAAWREDLSFGGVGWSIPDFSGSSICAGR 146
                   E+       WS  P   WKL N DA+W E+   GG+GW + D  G  + AG 
Sbjct: 89  DGYLPRGRENLNMLGVRWSAPPTNCWKL-NTDASWSEEREVGGIGWILCDCRGEIVLAGN 148

Query: 147 RKCSSRWQIKSHEALAILEGLK 156
            K   + +I + E + I+ GL+
Sbjct: 149 CKIREKKEINALELMTIIRGLQ 168

[Close]
BLAST of Spg010024 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-05
Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 0 

Query: 54  ASYQELKRFIIRFIEEDDGIVSRPSPLSSKSQASHESWSPLPPGVWKLNNVDAAWREDLS 113
           +S+  + + + +F+ E          +  K+  +   W P P  +W L N DA+W +   
Sbjct: 34  SSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTL-NADASWSDSTH 93

Query: 114 FGGVGWSIPDFSGSSICAGRRKCSSRWQIKSHEALAILEGLKGV 158
            GG+GW I  + G  + AG R   +   +K  EA AILEGL+ +
Sbjct: 94  RGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNL 136

[Close]
BLAST of Spg010024 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 40/142 (28.17%), Postives = 66/142 (46.48%), Query Frame = 0 

Query: 27  DELIFNHLSAKQLWKFSSRNTRLQDSKASYQELKRFIIRFIEE--DDGIVSRPSPLSSKS 86
           +E+  + + A Q+W+  +R+   +      Q+L R I+ FI    D G     +  S ++
Sbjct: 29  EEVATSMVIAWQIWESRNRSI-FRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQN 88

Query: 87  QA----SHES-------WSPLPPGVWKLNNVDAAWREDLSFGGVGWSIPDFSGSSICAGR 146
                   E+       WS  P   WKL N DA+W E+   GG+GW + D  G  + AG 
Sbjct: 89  DGYLPRGRENLNMLGVRWSAPPTNCWKL-NTDASWSEEREVGGIGWILCDCRGEIVLAGN 148

Query: 147 RKCSSRWQIKSHEALAILEGLK 156
            K   + +I + E + I+ GL+
Sbjct: 149 CKIREKKEINALELMTIIRGLQ 168

[Close]
BLAST of Spg010024 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-04
Identity = 38/115 (33.04%), Postives = 55/115 (47.83%), Query Frame = 0 

Query: 43  SSRNTRLQDSKASYQELKRFIIRFIEEDDGIVSRPSPLSSKSQASHESWSPLPPGVWKLN 102
           + RNT L+  K++ ++L   +IR IE++ G                  W P     WKL 
Sbjct: 50  AGRNTNLK-GKSTNKDL--HLIRRIEDNTG----------------AQWKPPTSNSWKL- 109

Query: 103 NVDAAWREDLSFGGVGWSIPDFSGSSICAGRRKCSSRWQIKSHEALAILEGLKGV 158
           N +AAWR D + GG+GW + D  G  I A  R   +   I   E +AI EGL+ +
Sbjct: 110 NTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAI 144

[Close]
BLAST of Spg010024 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.8e-04
Identity = 41/145 (28.28%), Postives = 65/145 (44.83%), Query Frame = 0 

Query: 25  GRDELIFNHLSAKQLWKFSSRNTRLQDSKASYQELKRFIIRFIEEDDGIVSRPSPLSSKS 84
           G +E   + + A Q+W+  +++   +   +  ++++  I R+I    G   R + L  KS
Sbjct: 5   GEEERRRSMIIAWQIWEMRNKSI-FKGVHSETRDIQLVIDRYIINSAG---RDTNLKGKS 64

Query: 85  ------------QASHESWSPLPPGVWKLNNVDAAWREDLSFGGVGWSIPDFSGSSICAG 144
                         +   W P     WKL N DAAWR D + GG+GW + D  G  I A 
Sbjct: 65  ANKDLHLIRRIGDNTGARWKPPTSNSWKL-NTDAAWRADTNTGGIGWILRDEKGEVIKAD 124

Query: 145 RRKCSSRWQIKSHEALAILEGLKGV 158
            R   +   I   E +AI EGL+ +
Sbjct: 125 CRIIRTERNITYLEVMAICEGLRAI 144

The following BLAST results are available for this feature:
BLAST of Spg010024 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155262.11.1e-0429.81uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143317.12.4e-0428.17uncharacterized protein LOC111013216 [Momordica charantia][more]
BLAST of Spg010024 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg010024 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNV95.2e-0529.81uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CQG01.2e-0428.17uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1CP267.5e-0433.04uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV19.8e-0428.28uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of Spg010024 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg010024.1Spg010024.1mRNA