Spg009908 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009908
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	tetratricopeptide repeat protein 5-like
Location	scaffold7: 4623097 .. 4623719 (-)
RNA-Seq Expression	Spg009908
Synteny	Spg009908

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCGAAGCCAAGGAACACACGTTCGACGAAGCCACAGCGGCCGCCGAAGAGCTATATCTCATCAGAGACACTTTTTTTCCTGTAAATCCCGATGACAAAACTTCCAAATTGCAAGAGCTCTCGGATCTTGCTGTCAAGATCCTCGATTCTATTCCTCCAGGTCGATTCTGCTTTCATTTTTCTTTGAACTTGCCTATTGCAATAAGCTACTATTCGACCTGGGATTTTGGCTTCCTTGTATGATATCAGAGAAAAATGTTGGGAAATGAGTGATAACGGAAATAAAACTTGGGATTGCGCTTGGTTTGATGTTTGATTTCTGAATATCTTGGACGTTTGGCTGATTTTTTGTGTAAAATATGTTTTCATTAGCTATGAAAGTTACTGCACTATTGTTTGGTGACATGTGTATAGGCTTGGGGTTGGTAATAATGTGAGTGCGTCTGTAGGGAGCTGTAAGTTATATGGGTTTTGATGGTAACTGTTGATACCAGAATTCGTATTGTCAGGTCAATGGTAAATTTGTAATGGATGGAGACAATAATGTGCCTGCAACAAAGGGAACTGAGCACCGGTGCGATGATAAGCCACACACTCCAATGCTCAAGTTAGAATAG

mRNA sequence

ATGAGCAGCGAAGCCAAGGAACACACGTTCGACGAAGCCACAGCGGCCGCCGAAGAGCTATATCTCATCAGAGACACTTTTTTTCCTGTAAATCCCGATGACAAAACTTCCAAATTGCAAGAGCTCTCGGATCTTGCTGTCAAGATCCTCGATTCTATTCCTCCAGGTCGATTCTGCTTTCATTTTTCTTTGAACTTGCCTATTGCAATAAGCTACTATTCGACCTGGGATTTTGGCTTCCTTGTCAATGGTAAATTTGTAATGGATGGAGACAATAATGTGCCTGCAACAAAGGGAACTGAGCACCGGTGCGATGATAAGCCACACACTCCAATGCTCAAGTTAGAATAG

Coding sequence (CDS)

ATGAGCAGCGAAGCCAAGGAACACACGTTCGACGAAGCCACAGCGGCCGCCGAAGAGCTATATCTCATCAGAGACACTTTTTTTCCTGTAAATCCCGATGACAAAACTTCCAAATTGCAAGAGCTCTCGGATCTTGCTGTCAAGATCCTCGATTCTATTCCTCCAGGTCGATTCTGCTTTCATTTTTCTTTGAACTTGCCTATTGCAATAAGCTACTATTCGACCTGGGATTTTGGCTTCCTTGTCAATGGTAAATTTGTAATGGATGGAGACAATAATGTGCCTGCAACAAAGGGAACTGAGCACCGGTGCGATGATAAGCCACACACTCCAATGCTCAAGTTAGAATAG

Protein sequence

MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPPGRFCFHFSLNLPIAISYYSTWDFGFLVNGKFVMDGDNNVPATKGTEHRCDDKPHTPMLKLE

Homology

[Close]

BLAST of Spg009908 vs. NCBI nr
Match: XP_008446682.1 (PREDICTED: tetratricopeptide repeat protein 5-like isoform X1 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. NCBI nr
Match: XP_008446683.1 (PREDICTED: tetratricopeptide repeat protein 5-like isoform X2 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. NCBI nr
Match: TYK09157.1 (tetratricopeptide repeat protein 5-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. NCBI nr
Match: XP_008446684.1 (PREDICTED: tetratricopeptide repeat protein 5-like isoform X3 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. NCBI nr
Match: KAA0034605.1 (tetratricopeptide repeat protein 5-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. ExPASy TrEMBL
Match: A0A5A7SZG5 (Tetratricopeptide repeat protein 5-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G006210 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.2e-18
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. ExPASy TrEMBL
Match: A0A5D3CAY6 (Tetratricopeptide repeat protein 5-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001480 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.2e-18
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. ExPASy TrEMBL
Match: A0A1S3BF62 (tetratricopeptide repeat protein 5-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489332 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.2e-18
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. ExPASy TrEMBL
Match: A0A1S3BGG9 (tetratricopeptide repeat protein 5-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489332 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.2e-18
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

[Close]

BLAST of Spg009908 vs. ExPASy TrEMBL
Match: A0A1S3BFP3 (tetratricopeptide repeat protein 5-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489332 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.2e-18
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MSSEAKEHTFDEATAAAEELYLIRDTFFPVNPDDKTSKLQELSDLAVKILDSIPP 56
          M SEAKE TFD+ATAA EELYLIRDTFFPVNPDDKTSKL+ELSDLA+KILDSIPP
Sbjct: 1  MCSEAKEDTFDKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPP 55

The following BLAST results are available for this feature:

BLAST of Spg009908 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446682.1	1.7e-17	89.09	PREDICTED: tetratricopeptide repeat protein 5-like isoform X1 [Cucumis melo]	[more]
XP_008446683.1	1.7e-17	89.09	PREDICTED: tetratricopeptide repeat protein 5-like isoform X2 [Cucumis melo]	[more]
TYK09157.1	1.7e-17	89.09	tetratricopeptide repeat protein 5-like isoform X3 [Cucumis melo var. makuwa]	[more]
XP_008446684.1	1.7e-17	89.09	PREDICTED: tetratricopeptide repeat protein 5-like isoform X3 [Cucumis melo]	[more]
KAA0034605.1	1.7e-17	89.09	tetratricopeptide repeat protein 5-like isoform X3 [Cucumis melo var. makuwa]	[more]

BLAST of Spg009908 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg009908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZG5	8.2e-18	89.09	Tetratricopeptide repeat protein 5-like isoform X3 OS=Cucumis melo var. makuwa O...	[more]
A0A5D3CAY6	8.2e-18	89.09	Tetratricopeptide repeat protein 5-like isoform X3 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BF62	8.2e-18	89.09	tetratricopeptide repeat protein 5-like isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A1S3BGG9	8.2e-18	89.09	tetratricopeptide repeat protein 5-like isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A1S3BFP3	8.2e-18	89.09	tetratricopeptide repeat protein 5-like isoform X3 OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Spg009908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009908.1	Spg009908.1	mRNA