Spg009879 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009879
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
Location	scaffold7: 5441650 .. 5443377 (+)
RNA-Seq Expression	Spg009879
Synteny	Spg009879

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTGAAAAAGAACATCAACTGAAAGAAGAGCGTAGCAGCGAAATGTTCTTATCTTACAATTCGGAAAAAGAGGAATTCAACTTACTTTTCAAAATATATGCATCCAAATTTTCACAACGCCAAACCACCAATTATTCTTCCGATCAGCGCCGCCGCCGGATTCTGGTGATCTCACGAGATGGCTGAGAACAGAGACATTATTCATAGAAACCCTAAATTCGCGAGGTCGTCGTTGTTGAAACATCTGCAGAATTTTGGGGAAAAGAAAGAAGAAACTCCGCGAGTGCCACCGGAGAAACCCAACGTCGTCACTGTTCCGGTGACGGAACCGGTTGCTCCGCCGCCGTTGGCGGCTGAGTGCAAGCGGCCGGGCAAGTTCTCGCATCCGGCGATCCGGTGGTCGGTAGGGTTCCTTCCCATTTTTATGATATCATATTAATTAGTGGAATATGTTTGAAATTTAGTGGAACTTTTGAATGTGTAGGCAAACATGAAACCGGACTTTGAGATATATATTTGTTTGGTTAAATTAGAAAGAAAATACCACTAAATTATGAGATTGGTTTTAATTATACATTTGAACTTTCAAAAGTTTCATTTTAGCGTTCAAAGTTGGAAGTTTGGAAAATAACGTGTTTGCATATGAATTGTTGCTTATGTGAATAGATTTAAATACATAGGTGGAATTCCCTAAAAAAAAAAAATACATAGGTGGAAAAAACAATAAAATCACATACAACCACATTATTTTTTGTCAATAAATTTCATAGAAAATGTCTCCAATGGTCGCTTTGAAACAATGTTCAAACTTCAAGGACTAAAATTAAACTTTTGAAAGTTCAAAGGTATAATTGAAACTAAATTTATAGTTTAGGAGTATTTTTTATAATTTAAACTATTTGTTTTAGAATATTTTGAAATTCACTGCATTTTGATTCCTAAAATTTGAACACTATTCTATTTTTATCTCTAAAGGTTTTTGCTCCAAATTTTTCATACTATATATTTTAATACTTGGACTTTTAAAAAAGAACTATTCTATGAAAGAAGTAACTCATATATCTTATTCAAAAAAAAAAAAAAAACCTCATATATCTTATGAAGATTGTGAGGTCTCCTCATCTTTTCAGTGTGATATCTTTCATCAACAAAATTTTAAAAAGTTTAGGAAGTAAACTTGTAATTTACTTTTTTCTCCTTGTTCTTTTTTTTTTTTTCAAGTTTTATATCAATTAAGCTATGCTTATGTTGGCTTTTAATTCTATGAGCTGTCGTCAGAATTCTCGACTGCAATGCTACACTACCAAACAAATTGCAGCCCTTCCAAGCTCTAATAAGAATTAAAAATTTTAAATCTGAATGTAATTTTTTTTGGAAAAAAAATATTATTTTGATGTGGTTCATGTCATTTTCATCTACTTTCAGCTATATGCTTTAGGAGGATATCTTATCGTAAGGTGGGCTTGGAAAAGATGGAAGTCTGAGGAAGACGAAGACAAAAAATAAGCTTTCGAGATTCGAAATGCAGTTTCTTATTAATTTTAGTGCTTTGCTTTGCCATGTGATTGCCAATAAATTTAAGCCAAGAGAATAAGGCTTCAAATGATATATTCTTTTACTATATGATTCTTGTAATTATTATTGTACTAAATATTGTTTGTAAAAGTAAATTAAAAGTTTCGAAATCGATTACATTTATACTTGGCAAGCGTCTTTCAGCCTATTCG

mRNA sequence

ATGGCTGAGAACAGAGACATTATTCATAGAAACCCTAAATTCGCGAGGTCGTCGTTGTTGAAACATCTGCAGAATTTTGGGGAAAAGAAAGAAGAAACTCCGCGAGTGCCACCGGAGAAACCCAACGTCGTCACTGTTCCGGTGACGGAACCGGTTGCTCCGCCGCCGTTGGCGGCTGAGTGCAAGCGGCCGGGCAAGTTCTCGCATCCGGCGATCCGGTGGTCGCTATATGCTTTAGGAGGATATCTTATCGTAAGGTGGGCTTGGAAAAGATGGAAGTCTGAGGAAGACGAAGACAAAAAATAA

Coding sequence (CDS)

ATGGCTGAGAACAGAGACATTATTCATAGAAACCCTAAATTCGCGAGGTCGTCGTTGTTGAAACATCTGCAGAATTTTGGGGAAAAGAAAGAAGAAACTCCGCGAGTGCCACCGGAGAAACCCAACGTCGTCACTGTTCCGGTGACGGAACCGGTTGCTCCGCCGCCGTTGGCGGCTGAGTGCAAGCGGCCGGGCAAGTTCTCGCATCCGGCGATCCGGTGGTCGCTATATGCTTTAGGAGGATATCTTATCGTAAGGTGGGCTTGGAAAAGATGGAAGTCTGAGGAAGACGAAGACAAAAAATAA

Protein sequence

MAENRDIIHRNPKFARSSLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAAECKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDKK

Homology

[Close]

BLAST of Spg009879 vs. NCBI nr
Match: XP_022957161.1 (uncharacterized protein LOC111458630 [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MAENRDIIHRNPKFARS-SLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAA 60
           M +NRDI+  NP+   S S  ++L   G+ +++T  +PP KPN+VT+P +E   PPPL A
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  ECKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDK 101
           ECKRPGKFSHPAIRW LYALGG+LI RWA K+WKS EDE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

[Close]

BLAST of Spg009879 vs. NCBI nr
Match: KAG6601203.1 (hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MAENRDIIHRNPKFARS-SLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAA 60
           M +NRDI+  NP+   S S  ++L   G+ +++T  +PP KPN+VT+P +E   PPPL A
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 76

Query: 61  ECKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDK 101
           ECKRPGKFSHPAIRW LYALGG+LI RWA K+WKS EDE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

[Close]

BLAST of Spg009879 vs. NCBI nr
Match: KAG7031999.1 (hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MAENRDIIHRNPKFARS-SLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAA 60
           M +NRDI+  NP+   S S  ++L   G+ +++T  +PP KPN+VT+P +E   PPPL A
Sbjct: 1   MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 60

Query: 61  ECKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDK 101
           ECKRPGKFSHPAIRW LYALGG+LI RWA K+WKS EDE K
Sbjct: 61  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 101

[Close]

BLAST of Spg009879 vs. NCBI nr
Match: XP_022985696.1 (uncharacterized protein LOC111483672 [Cucurbita maxima])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MAENRDIIHRNPKFARSSLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAAE 60
           M E RDI+  NPK A     ++    G+ +EE   +PP+KPNVVT+P +E   PPPLAAE
Sbjct: 1   MVEYRDIVPTNPKVA-WFWPRNRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAAE 60

Query: 61  CKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDK 101
           CKRPGKFSHPAIRWSLYALGG++I RWA KRWKS EDE K
Sbjct: 61  CKRPGKFSHPAIRWSLYALGGFIIARWALKRWKSGEDEGK 99

[Close]

BLAST of Spg009879 vs. NCBI nr
Match: XP_023553666.1 (uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 2.8e-24
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   MAENRDIIHRNPKFARSSLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAAE 60
           M +NRDI+  +PK    S  ++L   G+ +++T  +PP+KPN+VT+P ++   PPPL AE
Sbjct: 17  MVDNRDIVPTDPK-VTWSWSRNLNKLGDNQQQTSPLPPQKPNLVTLPGSQVPPPPPLTAE 76

Query: 61  CKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDK 101
           CKRPGKFSHPAIRW LYALGG+LI RWA K+WKS EDE K
Sbjct: 77  CKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 115

[Close]

BLAST of Spg009879 vs. ExPASy TrEMBL
Match: A0A6J1GYG5 (uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC111458630 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.3e-26
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MAENRDIIHRNPKFARS-SLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAA 60
           M +NRDI+  NP+   S S  ++L   G+ +++T  +PP KPN+VT+P +E   PPPL A
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  ECKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDK 101
           ECKRPGKFSHPAIRW LYALGG+LI RWA K+WKS EDE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

[Close]

BLAST of Spg009879 vs. ExPASy TrEMBL
Match: A0A6J1J8Z1 (uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MAENRDIIHRNPKFARSSLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAAE 60
           M E RDI+  NPK A     ++    G+ +EE   +PP+KPNVVT+P +E   PPPLAAE
Sbjct: 1   MVEYRDIVPTNPKVA-WFWPRNRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAAE 60

Query: 61  CKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDK 101
           CKRPGKFSHPAIRWSLYALGG++I RWA KRWKS EDE K
Sbjct: 61  CKRPGKFSHPAIRWSLYALGGFIIARWALKRWKSGEDEGK 99

[Close]

BLAST of Spg009879 vs. ExPASy TrEMBL
Match: A0A1S3BGK5 (uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.4e-20
Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MAENRDIIHRNPKFARSSLLKHLQN-FGEKKEETPRVPPEKPNVVTVPVTEPVAPPPLAA 60
           MAEN++ I +NPK     L  + Q    +KKEET   PPEKP+VVT+P +  V+PPP+ A
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETN--PPEKPDVVTIPASGVVSPPPVKA 60

Query: 61  ECKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDKK 102
           E K PGKFSHPA+ W L ALGG+LI+ WAW++W+ ++DE KK
Sbjct: 61  EFKFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETKK 100

[Close]

BLAST of Spg009879 vs. ExPASy TrEMBL
Match: A0A0A0KRF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-19
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MAENRDIIHRNPK---FARSSLLKHLQNFGEKKEETPRVPPEKPNVVTVPVTEPVAPPPL 60
           MAEN + I RNPK   F R++  K L N  +KKEE   +P  K  VVT+P  E V PPP+
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQK-LNNVDQKKEEI-NLPETKSEVVTIPAPEVVPPPPI 60

Query: 61  AAECKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWKSEEDEDKK 102
            AE K  GKFSHPAI WSL ALGG+ I+++AWK+WK ++DE KK
Sbjct: 61  KAEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKK 102

[Close]

BLAST of Spg009879 vs. ExPASy TrEMBL
Match: A0A6J1CDG9 (uncharacterized protein LOC111010218 OS=Momordica charantia OX=3673 GN=LOC111010218 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.9e-16
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 39  EKPNVVTVPVTEPVAPPPLAAECKRPGKFSHPAIRWSLYALGGYLIVRWAWKRWK-SEED 98
           EKPNVV VP  + VAPPPL AE K P KFSHPAIRW LY+LGGYLI+RWAW RWK S+ D
Sbjct: 32  EKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLILRWAWTRWKESQSD 91

Query: 99  EDKK 102
            D K
Sbjct: 92  GDDK 95

[Close]

BLAST of Spg009879 vs. TAIR 10
Match: AT3G52230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 9.5e-07
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 44  VTVPVTEPVAPPPLAAECK-RPGKFSHPAIRWSLYALGGYLIVRWAWKRW-KSEEDEDKK 102
           VT P   P +  P+  E +   G+ S+  I W +YALGG+L+++WAW RW +  E  DKK
Sbjct: 63  VTFPYNPPKSAEPIKFEAEPSSGRTSNSVILWQVYALGGFLVLKWAWARWNERNERSDKK 122

The following BLAST results are available for this feature:

BLAST of Spg009879 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957161.1	1.9e-25	59.41	uncharacterized protein LOC111458630 [Cucurbita moschata]	[more]
KAG6601203.1	3.3e-25	59.41	hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031999.1	3.3e-25	59.41	hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022985696.1	3.3e-25	63.00	uncharacterized protein LOC111483672 [Cucurbita maxima]	[more]
XP_023553666.1	2.8e-24	58.00	uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg009879 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg009879 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYG5	9.3e-26	59.41	uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A6J1J8Z1	1.6e-25	63.00	uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672...	[more]
A0A1S3BGK5	3.4e-20	53.92	uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=...	[more]
A0A0A0KRF3	2.9e-19	54.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1	[more]
A0A6J1CDG9	3.9e-16	71.88	uncharacterized protein LOC111010218 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]

BLAST of Spg009879 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52230.1	9.5e-07	41.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..48
None	No IPR available	PANTHER	PTHR36374:SF1	OS01G0969000 PROTEIN	coord: 28..101
None	No IPR available	PANTHER	PTHR36374	OS01G0969000 PROTEIN	coord: 28..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009879.1	Spg009879.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane