Spg009875 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009875
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein, putative, unclassified
Location	scaffold7: 9064132 .. 9065292 (+)
RNA-Seq Expression	Spg009875
Synteny	Spg009875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTTCGGGATGAGCTTCGTTCAGAGACAGTGTCCTCATTGATTATGGAGGATGGGTCCTTGGATGTGGCGAAGGTGCGGGGGGACTTTCTGCGGGATGATGTTGAACATATTTTGGTTATACCATTAAGTGGTCAAAGAGAGGACGATGAGATTTGTTGGGTGCCCGATGGTAAGGGGCGTTTTTCTGTGAAAAGTGTTTATGCGCTTGGGGTAAGTTTGGTCAAAGATGCATATGGTGCATCGTCCTCCACAGATAAGGTGGAGGCTATTTAGAAAAGTTTCTGGAGTTTGCGATTGCCTCCAAAAATGAAAATTTGTGGCTGGAAAATCCTCAATGACATCATTCCCACTCGTGTGAATCTACAAAAAAAAGGGAGTTGATCTTTCTCTATGGTGCCCGTTATGCCATAAGGCTCCTGAAACCATTGTACATTTGTTTTGGCAATGTAAGGTGACTAGAGATTTGTGACGGTATTTTCTATCTTCTAATATTGGTTGTCTGTTGTGGTGCAGGTATGATTGGGATCCTCTAGATCTTTCGCAAGGGAGATCAACTTCATCCTACTTCTATGGCATATTTGGGAGTTAAGAAATCGCCAGATCTTTCGCAAGGGAGAGAGATCTCCATTGGGATGGTGAAGAAGGCTATTCAGACATCTATTTGGGAGTTTTTCCCCTCGACTACTAGTGGGACTTGTGTGGGATGACTGTTTTGATTCGCATGGGATAGTGGAATTGCATGCGGTGGCTGCTTGGATTCCCCCCCGGCGAATACGTGGTCTCTTTGCTGTGATGCAGCTTGGCTAAAGGAGGCTGGGTGTTGCGGGACCATGTTGGAAATTTGATAGGGGCAGGTTGTGAGTCAGTTTACAGGGCTCCTCGGGGGTGGATATGTTGAAAATGCAGGCAATTCAGGTTGGATTGTTGGCTGTTGGTGAGATGGGGCTTCCTCGATTGATGGTGGAGTTAGATTGTTTGGTTCTTGTAAATCTCTTGAATGGTGTGGATGAGAAATTCACTTTAGTTCGTTCTATTGCTATGGAGGTGCGGAAGCTTTCTTCTTGTTTGGTGGGGATACAGTTTAAGCATAATCGACGAGGCCAAAATTTAGTGGCTGATATGTTGGCGCGACGAGTAATGAGTAATGGGATTTAG

mRNA sequence

ATGGGGGTTCGGGATGAGCTTCGTTCAGAGACAGTGTCCTCATTGATTATGGAGGATGGGTCCTTGGATGTGGCGAAGGTGCGGGGGGACTTTCTGCGGGATGATGTTGAACATATTTTGGTTATACCATTAAGTGGTCAAAGAGAGGACGATGAGATTTGTTGGGTGCCCGATGGTAAGGGGCGTTTTTCTGTGAAAAGTGTTTATGCGCTTGGGGTAAGTTTGGTCAAAGATGCATATGGTGCATCGTCCTCCACAGATAAGATCTTTCGCAAGGGAGATCAACTTCATCCTACTTCTATGGCATATTTGGGAGTTAAGAAATCGCCAGATCTTTCGCAAGGGAGAGAGATCTCCATTGGGATGGGCTCCTCGGGGGTGGATATGTTGAAAATGCAGGCAATTCAGGTTGGATTGTTGGCTGTTGGTGAGATGGGGCTTCCTCGATTGATGGTGGAGTTAGATTGTTTGGTTCTTGTAAATCTCTTGAATGGTGTGGATGAGAAATTCACTTTAGTTCGTTCTATTGCTATGGAGGTGCGGAAGCTTTCTTCTTGTTTGGTGGGGATACAGTTTAAGCATAATCGACGAGGCCAAAATTTAGTGGCTGATATGTTGGCGCGACGAGTAATGAGTAATGGGATTTAG

Coding sequence (CDS)

ATGGGGGTTCGGGATGAGCTTCGTTCAGAGACAGTGTCCTCATTGATTATGGAGGATGGGTCCTTGGATGTGGCGAAGGTGCGGGGGGACTTTCTGCGGGATGATGTTGAACATATTTTGGTTATACCATTAAGTGGTCAAAGAGAGGACGATGAGATTTGTTGGGTGCCCGATGGTAAGGGGCGTTTTTCTGTGAAAAGTGTTTATGCGCTTGGGGTAAGTTTGGTCAAAGATGCATATGGTGCATCGTCCTCCACAGATAAGATCTTTCGCAAGGGAGATCAACTTCATCCTACTTCTATGGCATATTTGGGAGTTAAGAAATCGCCAGATCTTTCGCAAGGGAGAGAGATCTCCATTGGGATGGGCTCCTCGGGGGTGGATATGTTGAAAATGCAGGCAATTCAGGTTGGATTGTTGGCTGTTGGTGAGATGGGGCTTCCTCGATTGATGGTGGAGTTAGATTGTTTGGTTCTTGTAAATCTCTTGAATGGTGTGGATGAGAAATTCACTTTAGTTCGTTCTATTGCTATGGAGGTGCGGAAGCTTTCTTCTTGTTTGGTGGGGATACAGTTTAAGCATAATCGACGAGGCCAAAATTTAGTGGCTGATATGTTGGCGCGACGAGTAATGAGTAATGGGATTTAG

Protein sequence

MGVRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKIFRKGDQLHPTSMAYLGVKKSPDLSQGREISIGMGSSGVDMLKMQAIQVGLLAVGEMGLPRLMVELDCLVLVNLLNGVDEKFTLVRSIAMEVRKLSSCLVGIQFKHNRRGQNLVADMLARRVMSNGI

Homology

[Close]

BLAST of Spg009875 vs. NCBI nr
Match: ABA91072.1 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] >BAH95030.1 Os11g0106066 [Oryza sativa Japonica Group])

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-07
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 3    VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGR 62
            +R   R + VS LI +DG+ DVA++R  FL  D E IL I LS ++E+D + W PD  GR
Sbjct: 1439 MRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNIDTELILSICLSPRQEEDFLAWHPDKSGR 1498

Query: 63   FSVKSVYALGVSLVKDAYGASSS 86
            FSV+S Y L   L  +  G+SSS
Sbjct: 1499 FSVRSAYNLACRLA-NTEGSSSS 1520

[Close]

BLAST of Spg009875 vs. NCBI nr
Match: XP_025877668.1 (uncharacterized protein LOC4351546 [Oryza sativa Japonica Group] >ABA96496.2 retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group] >BAF29216.2 Os12g0156200 [Oryza sativa Japonica Group])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8    RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKS 67
            R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S
Sbjct: 1087 RLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRS 1146

Query: 68   VYALGVSLVKDAYGASSSTDKI 90
             Y L   LV     +SS T+ I
Sbjct: 1147 AYRLAAQLVNIEESSSSGTNNI 1168

[Close]

BLAST of Spg009875 vs. NCBI nr
Match: AAQ19327.1 (bZIP-like protein [Oryza sativa Japonica Group] >KAB8116658.1 hypothetical protein EE612_057881 [Oryza sativa])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8    RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKS 67
            R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S
Sbjct: 1690 RLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRS 1749

Query: 68   VYALGVSLVKDAYGASSSTDKI 90
             Y L   LV     +SS T+ I
Sbjct: 1750 AYRLAAQLVNIEESSSSGTNNI 1771

[Close]

BLAST of Spg009875 vs. NCBI nr
Match: EEC68887.1 (hypothetical protein OsI_37529 [Oryza sativa Indica Group])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8    RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKS 67
            R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S
Sbjct: 1413 RLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRS 1472

Query: 68   VYALGVSLVKDAYGASSSTDKI 90
             Y L   LV     +SS T+ I
Sbjct: 1473 AYRLAAQLVNIEESSSSGTNNI 1494

[Close]

BLAST of Spg009875 vs. NCBI nr
Match: AAK39575.1 (putative reverse transcriptase [Oryza sativa Japonica Group] >AAP54636.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8   RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKS 67
           R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S
Sbjct: 366 RLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRS 425

Query: 68  VYALGVSLVKDAYGASSSTDKI 90
            Y L   LV     +SS T+ I
Sbjct: 426 AYRLAAQLVNIEESSSSGTNNI 447

[Close]

BLAST of Spg009875 vs. ExPASy TrEMBL
Match: A0A803NVH0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.4e-08
Identity = 58/205 (28.29%), Postives = 92/205 (44.88%), Query Frame = 0


Query: 11  TVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYA 70
           TVS L+  D   D+  +   FL  DVE IL IPLS    +D + W  +  G ++VKS Y 
Sbjct: 795 TVSDLLTADNRWDIPLLHSLFLASDVEKILNIPLSPFPRNDHLIWHHETDGCYTVKSGYK 854

Query: 71  LGVSLVKDAYGASS---STDKIFRKGDQLHPTSMAYLGVKKSPDLSQGREISIGMGSSGV 130
           + +SL +     S    +TD    K  Q+  T    + ++ S         S   G S  
Sbjct: 855 MALSLEEQLPNTSRLKLNTDAAVDKAKQI--TGFGAI-LRNSSGECIAAMSSPFPGCSKP 914

Query: 131 DMLKMQAIQVGLLAVGEMGLPRLMVELDCLVLVNLLNGVDEKFTLVRSIAMEVRKLSSCL 190
           + ++  A+   L  + ++ LP   +E D LV+VN L       +    +  ++  L S  
Sbjct: 915 ETMEALALIHSLQWIQDLRLPMDFIESDSLVVVNGLQSQHVSISNFHCLLADILLLVSNF 974

Query: 191 VGIQFKHNRRGQNLVADMLARRVMS 213
            G+   H +RG N+ A  LA+  +S
Sbjct: 975 PGVIITHVKRGANIAAHTLAKHALS 996

[Close]

BLAST of Spg009875 vs. ExPASy TrEMBL
Match: C7J8D0 (Os11g0106066 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0106066 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.3e-08
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 3    VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGR 62
            +R   R + VS LI +DG+ DVA++R  FL  D E IL I LS ++E+D + W PD  GR
Sbjct: 1439 MRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNIDTELILSICLSPRQEEDFLAWHPDKSGR 1498

Query: 63   FSVKSVYALGVSLVKDAYGASSS 86
            FSV+S Y L   L  +  G+SSS
Sbjct: 1499 FSVRSAYNLACRLA-NTEGSSSS 1520

[Close]

BLAST of Spg009875 vs. ExPASy TrEMBL
Match: Q2RBM8 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g01470 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.3e-08
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 3    VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGR 62
            +R   R + VS LI +DG+ DVA++R  FL  D E IL I LS ++E+D + W PD  GR
Sbjct: 1439 MRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNIDTELILSICLSPRQEEDFLAWHPDKSGR 1498

Query: 63   FSVKSVYALGVSLVKDAYGASSS 86
            FSV+S Y L   L  +  G+SSS
Sbjct: 1499 FSVRSAYNLACRLA-NTEGSSSS 1520

[Close]

BLAST of Spg009875 vs. ExPASy TrEMBL
Match: B8BN96 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37529 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8    RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKS 67
            R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S
Sbjct: 1413 RLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRS 1472

Query: 68   VYALGVSLVKDAYGASSSTDKI 90
             Y L   LV     +SS T+ I
Sbjct: 1473 AYRLAAQLVNIEESSSSGTNNI 1494

[Close]

BLAST of Spg009875 vs. ExPASy TrEMBL
Match: Q0IPZ9 (Os12g0156200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0156200 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8    RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKS 67
            R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S
Sbjct: 1087 RLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRS 1146

Query: 68   VYALGVSLVKDAYGASSSTDKI 90
             Y L   LV     +SS T+ I
Sbjct: 1147 AYRLAAQLVNIEESSSSGTNNI 1168

The following BLAST results are available for this feature:

BLAST of Spg009875 vs. NCBI nr


Match Name	E-value	Identity	Description
ABA91072.1	1.7e-07	46.99	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] >B...	[more]
XP_025877668.1	3.8e-07	46.34	uncharacterized protein LOC4351546 [Oryza sativa Japonica Group] >ABA96496.2 ret...	[more]
AAQ19327.1	3.8e-07	46.34	bZIP-like protein [Oryza sativa Japonica Group] >KAB8116658.1 hypothetical prote...	[more]
EEC68887.1	3.8e-07	46.34	hypothetical protein OsI_37529 [Oryza sativa Indica Group]	[more]
AAK39575.1	3.8e-07	46.34	putative reverse transcriptase [Oryza sativa Japonica Group] >AAP54636.1 retrotr...	[more]

BLAST of Spg009875 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg009875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803NVH0	6.4e-08	28.29	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
C7J8D0	8.3e-08	46.99	Os11g0106066 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0106066 PE...	[more]
Q2RBM8	8.3e-08	46.99	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
B8BN96	1.9e-07	46.34	Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX...	[more]
Q0IPZ9	1.9e-07	46.34	Os12g0156200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0156200 PE...	[more]

BLAST of Spg009875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 132..209 e-value: 6.6E-12 score: 45.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 97..214 e-value: 1.8E-6 score: 29.9
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 118..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009875.1	Spg009875.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity