Spg009728 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009728
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	VQ motif-containing protein 8, chloroplastic
Location	scaffold7: 4225266 .. 4225766 (+)
RNA-Seq Expression	Spg009728
Synteny	Spg009728

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCAGCTAAATCCTGCGACCTCAATGGCCCTCGCCCGTCTCCTCTCCTAATTCACAAAGATTCTCGCTTGATTCGCAAGGCTCCTCAGCAGCCGCAGCTCCGGCAGCCCGTCATAATCTACACCCATTCCCCGAAAATCATCCACACGCAGCCCAAGGATTTCATGGCCCTCGTCCAACGCCTCACCGGCTTCACGCCCTCCGACGCCGCCCGGCCTCAACAAACGCTTCAGAAACCGCCCTCCGACTCCGACAGGAATCTCAACGACAATGATTCTTCCTCGGTTCTCACGGACGACGAGAATAATAACGACGGCCGTCGTCCTCACAGAGATTGTAATTCGTCGTTTTTGTCCGATGATGCTCCTCTGTTCACTCCTCGTTCTTCGCTTCTCAGATATTCTTCTTTCGATACGGCGCCGTTTTCGTCTCCTGGTTTGGTTAACTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGCCTCCCTGAATTTTAA

mRNA sequence

ATGAGCCCAGCTAAATCCTGCGACCTCAATGGCCCTCGCCCGTCTCCTCTCCTAATTCACAAAGATTCTCGCTTGATTCGCAAGGCTCCTCAGCAGCCGCAGCTCCGGCAGCCCGTCATAATCTACACCCATTCCCCGAAAATCATCCACACGCAGCCCAAGGATTTCATGGCCCTCGTCCAACGCCTCACCGGCTTCACGCCCTCCGACGCCGCCCGGCCTCAACAAACGCTTCAGAAACCGCCCTCCGACTCCGACAGGAATCTCAACGACAATGATTCTTCCTCGGTTCTCACGGACGACGAGAATAATAACGACGGCCGTCGTCCTCACAGAGATTGTAATTCGTCGTTTTTGTCCGATGATGCTCCTCTGTTCACTCCTCGTTCTTCGCTTCTCAGATATTCTTCTTTCGATACGGCGCCGTTTTCGTCTCCTGGTTTGGTTAACTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGCCTCCCTGAATTTTAA

Coding sequence (CDS)

ATGAGCCCAGCTAAATCCTGCGACCTCAATGGCCCTCGCCCGTCTCCTCTCCTAATTCACAAAGATTCTCGCTTGATTCGCAAGGCTCCTCAGCAGCCGCAGCTCCGGCAGCCCGTCATAATCTACACCCATTCCCCGAAAATCATCCACACGCAGCCCAAGGATTTCATGGCCCTCGTCCAACGCCTCACCGGCTTCACGCCCTCCGACGCCGCCCGGCCTCAACAAACGCTTCAGAAACCGCCCTCCGACTCCGACAGGAATCTCAACGACAATGATTCTTCCTCGGTTCTCACGGACGACGAGAATAATAACGACGGCCGTCGTCCTCACAGAGATTGTAATTCGTCGTTTTTGTCCGATGATGCTCCTCTGTTCACTCCTCGTTCTTCGCTTCTCAGATATTCTTCTTTCGATACGGCGCCGTTTTCGTCTCCTGGTTTGGTTAACTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGCCTCCCTGAATTTTAA

Protein sequence

MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

Homology

[Close]

BLAST of Spg009728 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 184.1 bits (466), Expect = 9.7e-43
Identity = 116/179 (64.80%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSPAKSCD+NGPRPSPLLIHK SRLIRK P  PQLRQP+IIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPP--PQLRQPLIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPP--SDSDRNLN---DNDSSSVLTDDENNNDGRR------ 120
           QRLTGFTP            PP   DSDRN N   DNDSSSVLT++ N  D         
Sbjct: 61  QRLTGFTP----------PPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVK 120

Query: 121 --PHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 167
               +  + SFL+ D PLFTP    LRY+  D   F+SPGL NSLSPSFMEFLKGLPEF
Sbjct: 121 EVQSQSQSHSFLA-DVPLFTPAG--LRYAP-DATSFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of Spg009728 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 9.7e-43
Identity = 109/166 (65.66%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KSC++NGPRPSPLLIHKDSR IRK    PQLRQPVIIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRK----PQLRQPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPHRDCNSSFLS 120
           QRLTGF P     P   L    S S+RN NDNDSSS LT +E  N+      D   S + 
Sbjct: 61  QRLTGFNPPPPPPPSNALSL--SFSERNFNDNDSSSGLTTEEEINE----CGDQKQSVVL 120

Query: 121 DDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 167
                    SSLLRYSS  T PFSSP L+NSLSPSFMEFLK LPEF
Sbjct: 121 KQLVQRQSNSSLLRYSSDVTTPFSSPALINSLSPSFMEFLKALPEF 156

[Close]

BLAST of Spg009728 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-34
Identity = 92/166 (55.42%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPHRDCNSSFLS 120
           QRLTGF P            PP   +RN NDNDS+S +T +E+ N+ +            
Sbjct: 61  QRLTGFNP------------PPPQPERNSNDNDSTSGVTSEEDVNEKQ------------ 120

Query: 121 DDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 167
                     S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Sbjct: 121 -------SNCSVLKYSSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Spg009728 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 5.0e-31
Identity = 90/166 (54.22%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP K   ++GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPHRDCNSSFLS 120
           QRLTG +P +A        K PSD      +NDSSSV+T++++N                
Sbjct: 61  QRLTGCSPPNA-------DKAPSD------NNDSSSVVTEEDSN---------------- 118

Query: 121 DDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 167
              PLFTPRS                 LVNSLSPSFMEFLKGLPEF
Sbjct: 121 --CPLFTPRS-----------------LVNSLSPSFMEFLKGLPEF 118

[Close]

BLAST of Spg009728 vs. NCBI nr
Match: XP_027096313.1 (VQ motif-containing protein 8, chloroplastic-like [Coffea arabica])

HSP 1 Score: 127.9 bits (320), Expect = 8.3e-26
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 9   LNGPRPSPLLIHKDSRLI----------RKAPQQ-------PQLRQPVIIYTHSPKIIHT 68
           +NGPRPSPL I+KDS +I          +KAP++        Q RQPVIIYTHSPKIIHT
Sbjct: 15  INGPRPSPLRINKDSHVIQKPSSMNQVYKKAPKEQNTRLSTQQPRQPVIIYTHSPKIIHT 74

Query: 69  QPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPH 128
           +PKDFMALVQ+LTGF+ S+    +   ++       +  DNDSSSV +DD+   D     
Sbjct: 75  KPKDFMALVQKLTGFSRSEEQIVEAESKRDDQTITISQEDNDSSSVTSDDKYEGDNASDV 134

Query: 129 RDCNSSFLS----------DDAPLFTPRSSLLRYSS----FDTAPFSSPGLVNSLSPSFM 167
              +SS +S           D PLFTP S+L         +    F+SP +V+SLSPSF+
Sbjct: 135 IKESSSAVSPVNKGLNPYLTDIPLFTPNSNLFSSPQPVFRYPDVVFTSPNIVSSLSPSFV 194

[Close]

BLAST of Spg009728 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-12
Identity = 58/163 (35.58%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKA------PQQPQLRQPVIIYTHSPKIIHTQPK 60
           M P +  ++NG RPS L +  +S  I+K       P+      PVIIY HSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRP---H 120
           DFMALVQRLTG          + +++  S+S        SSSV+T++ N  D        
Sbjct: 61  DFMALVQRLTGL--------DEIIRRNTSES--------SSSVVTEEVNVGDDNTAAPFS 120

Query: 121 RDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSP 155
           +D        D PLFTP SS+  + S     + SP   +S  P
Sbjct: 121 QDRTQRQKLTDMPLFTP-SSMTLFGSPTQLMYMSPNRTDSFRP 146

[Close]

BLAST of Spg009728 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-10
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 11 GPRPSPLLIHKDSRLIRKAPQQPQ------------LRQPVIIYTHSPKIIHTQPKDFMA 68
          GPRPSPL +HKDS  I+K P+ P              R+PV+IY  SPK++H    +FM 
Sbjct: 26 GPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEFMN 85

[Close]

BLAST of Spg009728 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-10
Identity = 54/156 (34.62%), Postives = 69/156 (44.23%), Query Frame = 0


Query: 12  PRPSPLLIHKDSRLIRKAPQQPQL------RQPVIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P P  L ++KDS +I+K P           R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  FTPSD--------------AARPQQTLQKPPSDSDRNLN--------------------- 118
            T SD                   +T+ +P  D   N N                     
Sbjct: 101 MTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGI 160

[Close]

BLAST of Spg009728 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-07
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 11 GPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIH 68
          GP+P+PL +  DS ++I+K         PQ PQ  Q           PV IYT +P+IIH
Sbjct: 13 GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

[Close]

BLAST of Spg009728 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.7e-43
Identity = 116/179 (64.80%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSPAKSCD+NGPRPSPLLIHK SRLIRK P  PQLRQP+IIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPP--PQLRQPLIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPP--SDSDRNLN---DNDSSSVLTDDENNNDGRR------ 120
           QRLTGFTP            PP   DSDRN N   DNDSSSVLT++ N  D         
Sbjct: 61  QRLTGFTP----------PPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVK 120

Query: 121 --PHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 167
               +  + SFL+ D PLFTP    LRY+  D   F+SPGL NSLSPSFMEFLKGLPEF
Sbjct: 121 EVQSQSQSHSFLA-DVPLFTPAG--LRYAP-DATSFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of Spg009728 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 92/166 (55.42%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPHRDCNSSFLS 120
           QRLTGF P            PP   +RN NDNDS+S +T +E+ N+ +            
Sbjct: 61  QRLTGFNP------------PPPQPERNSNDNDSTSGVTSEEDVNEKQ------------ 120

Query: 121 DDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 167
                     S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Sbjct: 121 -------SNCSVLKYSSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Spg009728 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 92/166 (55.42%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPHRDCNSSFLS 120
           QRLTGF P            PP   +RN NDNDS+S +T +E+ N+ +            
Sbjct: 61  QRLTGFNP------------PPPQPERNSNDNDSTSGVTSEEDVNEKQ------------ 120

Query: 121 DDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF 167
                     S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Sbjct: 121 -------SNCSVLKYSSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of Spg009728 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.4e-33
Identity = 97/168 (57.74%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALV 60
           MSP KS ++NGPRPSPLLIH  SRLIRK     QLRQP+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRK---PVQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPHRDCNSSFLS 120
           QRLTG  P     P       PS S+RNLNDNDSSS +T +E+ N+ +            
Sbjct: 61  QRLTGCNPPP---PLPLPSAKPSLSERNLNDNDSSSGVTTEEDINEKQ------------ 120

Query: 121 DDAPLFTPRSSLLRYSSFD-TAPFSSPG-LVNSLSPSFMEFLKGLPEF 167
                     S+L+YSS D T PFSSP  L +SLSPSFM+FLK LPEF
Sbjct: 121 -------SNCSVLKYSSHDVTTPFSSPAFLSSSLSPSFMDFLKALPEF 143

[Close]

BLAST of Spg009728 vs. ExPASy TrEMBL
Match: A0A6P6V0F4 (VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=LOC113716215 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.0e-26
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 9   LNGPRPSPLLIHKDSRLI----------RKAPQQ-------PQLRQPVIIYTHSPKIIHT 68
           +NGPRPSPL I+KDS +I          +KAP++        Q RQPVIIYTHSPKIIHT
Sbjct: 15  INGPRPSPLRINKDSHVIQKPSSMNQVYKKAPKEQNTRLSTQQPRQPVIIYTHSPKIIHT 74

Query: 69  QPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRPH 128
           +PKDFMALVQ+LTGF+ S+    +   ++       +  DNDSSSV +DD+   D     
Sbjct: 75  KPKDFMALVQKLTGFSRSEEQIVEAESKRDDQTITISQEDNDSSSVTSDDKYEGDNASDV 134

Query: 129 RDCNSSFLS----------DDAPLFTPRSSLLRYSS----FDTAPFSSPGLVNSLSPSFM 167
              +SS +S           D PLFTP S+L         +    F+SP +V+SLSPSF+
Sbjct: 135 IKESSSAVSPVNKGLNPYLTDIPLFTPNSNLFSSPQPVFRYPDVVFTSPNIVSSLSPSFV 194

[Close]

BLAST of Spg009728 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-13
Identity = 58/163 (35.58%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 1   MSPAKSCDLNGPRPSPLLIHKDSRLIRKA------PQQPQLRQPVIIYTHSPKIIHTQPK 60
           M P +  ++NG RPS L +  +S  I+K       P+      PVIIY HSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRP---H 120
           DFMALVQRLTG          + +++  S+S        SSSV+T++ N  D        
Sbjct: 61  DFMALVQRLTGL--------DEIIRRNTSES--------SSSVVTEEVNVGDDNTAAPFS 120

Query: 121 RDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSP 155
           +D        D PLFTP SS+  + S     + SP   +S  P
Sbjct: 121 QDRTQRQKLTDMPLFTP-SSMTLFGSPTQLMYMSPNRTDSFRP 146

[Close]

BLAST of Spg009728 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-11
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 11 GPRPSPLLIHKDSRLIRKAPQQPQ------------LRQPVIIYTHSPKIIHTQPKDFMA 68
          GPRPSPL +HKDS  I+K P+ P              R+PV+IY  SPK++H    +FM 
Sbjct: 26 GPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEFMN 85

[Close]

BLAST of Spg009728 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-11
Identity = 54/156 (34.62%), Postives = 69/156 (44.23%), Query Frame = 0


Query: 12  PRPSPLLIHKDSRLIRKAPQQPQL------RQPVIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P P  L ++KDS +I+K P           R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  FTPSD--------------AARPQQTLQKPPSDSDRNLN--------------------- 118
            T SD                   +T+ +P  D   N N                     
Sbjct: 101 MTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGI 160

[Close]

BLAST of Spg009728 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-10
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 5  KSCDLNGPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTH 64
          +S  + GPRP PL +  DS ++I+K         PQ PQ  Q           PVIIYT 
Sbjct: 7  RSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTV 66

Query: 65 SPKIIHTQPKDFMALVQRLTGFT 68
          SP+IIHT P +FM LVQRLTG T
Sbjct: 67 SPRIIHTHPNNFMTLVQRLTGKT 89

[Close]

BLAST of Spg009728 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-08
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 11 GPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIH 68
          GP+P+PL +  DS ++I+K         PQ PQ  Q           PV IYT +P+IIH
Sbjct: 13 GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

The following BLAST results are available for this feature:

BLAST of Spg009728 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150646.1	9.7e-43	64.80	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
XP_038893302.1	9.7e-43	65.66	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
XP_008466850.1	2.8e-34	55.42	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
KAG7013019.1	5.0e-31	54.22	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_027096313.1	8.3e-26	44.97	VQ motif-containing protein 8, chloroplastic-like [Coffea arabica]	[more]

BLAST of Spg009728 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA36	4.1e-12	35.58	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8LGD5	6.6e-10	46.38	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
Q9LS54	6.6e-10	34.62	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
F4HWF9	2.4e-07	45.45	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of Spg009728 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC48	4.7e-43	64.80	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5D3CFH5	1.4e-34	55.42	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	1.4e-34	55.42	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KT78	4.4e-33	57.74	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A6P6V0F4	4.0e-26	44.97	VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=...	[more]

BLAST of Spg009728 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68450.1	2.9e-13	35.58	VQ motif-containing protein	[more]
AT3G18690.1	4.7e-11	46.38	MAP kinase substrate 1	[more]
AT3G18360.1	4.7e-11	34.62	VQ motif-containing protein	[more]
AT1G21326.1	6.8e-10	46.99	VQ motif-containing protein	[more]
AT1G21320.1	1.7e-08	45.45	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..67 e-value: 4.9E-11 score: 41.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..101
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 9..166
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 9..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009728.1	Spg009728.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding