Spg009586 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009586
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 8826840 .. 8828157 (-)
RNA-Seq Expression	Spg009586
Synteny	Spg009586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGAAACATATACTCGGATTAGACTCAAAGAAGATAAAGATTCAGATGAACACAAACGAGCTCCTACTTTCTGAAGCGACATATCTCTATCGGATCAGAAATTAGGGTGGGATTCACATAGTTATTGAATTTAATGCAAATAAGGCAATAGAAATATAACATGTAAGAAAGTAAGAAGAACATGTACTCATCTTCTTGTTCTTCAAAAGAACAACATGATCAGAAGAAAACTCAACAAATTAAAGGTTACCAACTTTACTGCTTGCTTGTCCTGTTACTTTTTGTCATCTTTACTTTGTGGCATGCTTTGATGAATGAACCTGAGATAATCATTCACAAACAGCTTAAAAAGTCCAAATCAGTTGAAGAAAAGATGAAGAAATCATAATAATGTCATTGGGGCATTTCAACAAACACGTATGCTGCATAACGAGAAGTGACAACATAACCAGTAGTTTTCGATCCAAGTTACAGCTGTGTGGAGAAAAATTTGGAAGCACGCTTTCAATTCAATGGAAATGAGTATTTTTACAAGATGATTACACAGTGCACTCACAAGTCAACGAAAAACGACGCAGAAATCGACATCACAGATCTGTTTTGGCATAGGATTCCCAGACACAATTTGGATCGAAATCTCAAATGCTTCAAATAAGCTATGATTATGTTGAAATTGAAATGCAACTATAAATAAGCTCTCATGCTTACAAATCTCGGTAGAAATTGGCTTCTTCGATCGCCATTAAAACGCAGAGACAAATGACAGAGCAGAACAGAACGCTAGTTCTAGCTTACCTCTTGATGGGCCTCCTCATAGCTTCTCAATGTGTTAATTCGCATGGCTTCGTGATTCTTGAATCGGCTGAATCCAGAGAAGCGCAATTGGGCAGAAGATTCATGCTCGTCGATACAGTGAGTCGATTCTCTCTGCTTTTTACATTCAATTCTTGACAAAATCTTATCGTTTTTTGCTTGCAATTTGAAATTCGATGAAGGGCGAAGAACAGGCGAGAGATAGCAAACGGAAGAATCCTTCGGGGCCGAACCCAATTGGGAATCGACACCCACCGTCGATCCAAGGCTGAAACAATGGGAAATCTATCTGTTGGTTATACTGCAGAGGGGGTGGGTTTGGAATTCTTTGTGGAGTTTAATCAGCTTGAAAATCTGTCAAAATTTTCGTTTGTGAAGATGAAGAACGTTGAATTTCATGGAGTTTATATATGAATTTTGGCAATGGTATTGAAGTGTTTTTCCTCTGCGTTGGATTTGATAACATATTTGAATTTTGGCTATATAGTCAAGACTAAGAGCAG

mRNA sequence

ATGACAGAGCAGAACAGAACGCTAGTTCTAGCTTACCTCTTGATGGGCCTCCTCATAGCTTCTCAATGTGTTAATTCGCATGGCTTCGTGATTCTTGAATCGGCTGAATCCAGAGAAGCGCAATTGGGCAGAAGATTCATGCTCGTCGATACAGGCGAAGAACAGGCGAGAGATAGCAAACGGAAGAATCCTTCGGGGCCGAACCCAATTGGGAATCGACACCCACCGTCGATCCAAGGCTGA

Coding sequence (CDS)

ATGACAGAGCAGAACAGAACGCTAGTTCTAGCTTACCTCTTGATGGGCCTCCTCATAGCTTCTCAATGTGTTAATTCGCATGGCTTCGTGATTCTTGAATCGGCTGAATCCAGAGAAGCGCAATTGGGCAGAAGATTCATGCTCGTCGATACAGGCGAAGAACAGGCGAGAGATAGCAAACGGAAGAATCCTTCGGGGCCGAACCCAATTGGGAATCGACACCCACCGTCGATCCAAGGCTGA

Protein sequence

MTEQNRTLVLAYLLMGLLIASQCVNSHGFVILESAESREAQLGRRFMLVDTGEEQARDSKRKNPSGPNPIGNRHPPSIQG

Homology

[Close]

BLAST of Spg009586 vs. NCBI nr
Match: KAG6600053.1 (hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 3.2e-23
Identity = 66/83 (79.52%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 1  MTEQNRTLVLAYLLMGLLIASQCVNSHGFV-ILESAESREAQLGRRFMLVDT--GEEQAR 60
          MTEQNRTLVLAYLL GLLI+SQCV+S GFV   ESAESR+AQ GR+FM VDT  G EQ R
Sbjct: 5  MTEQNRTLVLAYLLFGLLISSQCVHSIGFVNHFESAESRQAQPGRKFMFVDTMKGREQVR 64

Query: 61 DSKRKNPSGPNPIGNRHPPSIQG 81
           S RKNPSGPNPIGNRHPPSIQG
Sbjct: 65 ASGRKNPSGPNPIGNRHPPSIQG 87

The following BLAST results are available for this feature:

BLAST of Spg009586 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600053.1	3.2e-23	79.52	hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg009586 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg009586 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg009586 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009586.1	Spg009586.1	mRNA