Spg009531 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009531
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold9: 24577849 .. 24583030 (+)
RNA-Seq Expression	Spg009531
Synteny	Spg009531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTTGTTGCCGATGCCGCTGTTGCCGTTGCCTGCGCCGCTGGCTAGAGGAGCTATGGCGTCAACAACGACCACGACGGCTGGAGAAGGTGCGAGAGAGAGAGAGAGACGATCCGAGGGAGAGAGGCGACGGCGGCGCTCATCGGGCAGAGATTCGATCTGAGACAGCGATGTGAGGGAGGTGACGATGGCGCGAGGGTATGGAACGAGAGGTTGGAGAGGTTAGAGAGAGAGGTAACGACGGCGTGAGGGGATGGAACCAGAGGTTAGAGAGAGGAAAAATCGAAAAAGGGAGAGACGTGAGGGCGTTTGATTTTCTATTTTGTTTTTTTTTAATTCTACTTTTTCTTTTTTTAAATTTTTTTCAAATTAATGACAGTTAATTAAAGTCGTTAATCTATGACATTGAAAAAACGTCATAAAATATCAAAAATACGAAAACTTTCGTCTTTTCCCGCCAAAAACGCGCCCCAATCATTTATGACATTTTTTTTCTTCCTCCCTTTATTTGGTTTGACTATGGTGTCATGAAATGTCAAAATTGTAGTAGTGAACATTACAGATTGTACACCCACATGCATACAACATTAATACTAATCAAATTTTATTCCACGTGTCTCCATCTTCGAAGTTACGTGTGAATAAATTGGCATGCCCAGTGGGACCATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAACATAAGTGAAAAGATGTCAATCAAAACTTTTTCAATGACTGCTGTCATGAGCAACTTTTACACAAGTTCTACCACCCACAGTTGCTCTGGTGAACTCAAGTTGCAAGATGATCAAGCTCTTATCATCATAAGCAAAGAAACAATATTTTCGGGGGCATGTACTAGTGACAAGTTTCTTGTAAAGTATAACCCTTTGTTCGAGCCTGATTCTGACGTAGTGACTGTCATGATGACTGAGGCAAGAACTATGAAAAAAAGAATGTCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGACCACCTAAAGAGCCAGATTGAGAACCAAAATATCGTTGAATCAAGTCAAACCTATGTCGTAAAAAATCATGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAATGTTCTGCTTCGATCGCTTCTCTATCTATCCAACAACTACAGGACATGATCACAAACTGTATTAGAGCTCAATACGGTGGACCTACTCAAGACTCCCTCTTGTATTACAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCTGTTGGGTATCAGTAGCCAAAGTTTCAGCAGTTTGATGGAAAGGGCAACCCTAAACAACATATTGCCCACTTCGTCGAGACATGCGAGAACGCTGGTACTCGAGGAAACCTACTAGTCAAGCAGTTTGTTTGAACACTTAAAGGAAATGCCTTTGACTGGTACACTGATCTAGAACCTGAGTCAATCGGCAGTTGGGAGGAATTCGAAAGAGAGTTCTTGAATCGCTTCTACAACACTAGACGAACAGTTAGCATGTTCGAGCTCACAAATACTAAACAACGAAAAGGTGAACTCGTTGTTAACTACATAAATCGCTGGAGAACTATGAATCTAAATTGCAAAGATGGCCTCACTGAACTCTCCGCTGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTATATCCTTCAAGGTATAAAACCTTGCACCTTTGAAGAACTAGCAACTCACGCCCACGATATGGAGCTAAGTATTTCTAGTCGAGAAAGCCAAGACCTTCTACTCTCTAACATGAGGAAAGAAGGAAAGGACCATCGAAACGACTATAGAAGAATCTATGGTTGTACATACAACCCTTCTAAAGTCGTCTTCAAAAGAAAAGCGACAAGAAAATGGAACGCGTCATTTAACTTTAAAGGAAAGAAAGAAAAAGGTCTATCATTTCCCTAATTTTGACATCCCAGACATGCTGGAACAACTACTGAAAACACGGTTGATAAAACTTCCTAAGTGTAAACGACCGGAAGAGATATAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTGTCAGCCATCCAGTGGAGAAATGTTTTGTCCTAAAAGAGTTAATCTTAAGGCTAGCTAAGGAAGGGAAAATTGAGCTTGACCTTGATGAAGTAGCTCAATCAAATCATGTTTCAGTCAAAGGAAAGGAAAAATATCAAAGAAAGAAGAATCCTAGGAAATCTCAACCTAAGAGGAAGAAAAGTAAAGAATTTTCTCAACCTTGACAACCGGTGACATTTAATAAATTCTTCTCCAAAATTTTCCACAAAAAGGAGAAAGAGAAATGTTCAACTTCATACTGCATCAATGTAGAAGAAGTTGACGATTCTAAAAAATTTGAACAAAGGACTTCTATTTTCAATCGCATAAAGCTTTCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTCTAACTGCGACAAAAGAAGAAAACCAATGTTTAGTGTCTACCTCCACTCGACCTTCAGCTTTTCAAAGGCTAAGTGTCTTCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGATGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTAAAACTGTTTGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTATTGTCTCGTCAAGTATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATAATCCTGACTAATCCTATAAGTGAAGGATCTGATCAAGACCATGATGAAAATAAAGGCTTTTAAGATGTAAAAGCTCATTATCGCAAGAGCCTACACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAATCCTAAACTACATTATGACTTGATCTCTGTTCCTCAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTCCAGTCTCTGCAAACAAAAAAAAAGTGCAACAAATATTGAAGCACAAAAAAATAAATTGAGGATGTCTCAAAAACAAAAGACAATATAAATTGAGGAAATTCATCACTACTAGGGGCAACACAACAAATTGAAGTTGGCACCGTTATGAATGTGAAGCTACGAGTTGGATGAATAAAAGAAGACTTCATTCCTCCAAATTCGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACTCTCACCCTAAGTTCGTTGTTCCCTCTTCCTCAAGTTCGAAGGTTCTTACACTGTACATTGCTGCATTGTTCCTTCTCCAAGTTCGAGGGTTCTTACATTGTACGTTACTATGTTGTTCCTTCCAAGTTCGAAGGTTCTTACGTTGTACGTTGTTGCGTTGTTCCTTCTCCATGTTCGAGGGTTCTTACGCTGTAAGCTACTGTGTTGTTCCTTCTCTAAGTTCGAAGGTTCTTACGATGTACGTTGTTGCGCAGTTCCTTCTCCAAGTTCGAAGGTTCCCCATTGTACACTACTGTGTTGTTCCTTCTTCAGGTTCGAAGGTTCTCCGCTCTACGCTGCTGCATTGCTCCTTCTTCAAGTTCGAAGGTTCTTATGTTGTACGTTGTTGCGTTATTTCTTCTTGAAGTTTTAAGGATCTTACACTGCTTCGTCGTTGTTCCTTCTTCAAGTTTGAGACTTCTCTCCAGGTTTGAAGGTTCTCACGCTGCTTTGCTGCAATTCCTTTCTCTCCAAGTTCAAAGGTTCTCACGCTGCTCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTTACACTGCTTCGTCACTGTTCCTTCTTCAAGTTTGAGACTTCTCTCCAAGTTTGAAGGTTCTCACGTTGCTTCGCTGTAGTTTATTCTATCCAAGTTCGAAGGTTCTCACATTGTTCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGCAGTTCATTCCCCAAGTTCGAAGGTTCTCACGCTACTTCGCTGAAGGAACTTCCTCTAAGTTCGAAGTTTCTCACGTTGTATGTTGCTTGTTCCTTCTCTAAGTTCAAAGATTCTCACGTTGTACTCTACTTCGCTGCTCCTTCTTCAAGTTTCGAAGGTTCTCACGATGTACGTTGCTTGTTCCTTCTCTAAGTTCGAAGGTTCTCACGTTGTACGTTACTTGTTCCTTCTCCAAGTTTCGAAGGTTCTCACGCTGCTTCACTGCTTGTTCCTTCTCCAAGTTCGAAGGTTTTTCTCACACTGATTCGCTATTTGTTCCTTCTCTAAGTTCGAAGGTTCTCAAAAATTCTCATGTTGCTTCGTTGCGGCTCCAATTCCTTCCTCCAAGTTTGAAAGTTCTCACATTGCTTCGTTGCAGTTCTTTCCTCCAAGTTCAAAGGTTCTCAGTGCCTTCTCTCCACGTTTAAAGGTTCTCACGCTGCTTCACTGTTGTTCCTTCTCCAAGTTCAAAGGTTCTCACGCTGCTTCTCTGTTGTTCCTTCTCCAAGTCGAAGGTTCTCACGTTGCTTCATTGTTGTTCCTTTTTTAAGTGTGAGGGTTCTCACATTGTTTCACTGCAGTTTTTTCTCCAAGTTTGAAGATTCTCACGCTACATTGTTTCGCTTGTGTTCCTTCTCCAAGTTTGAAGGTTCTCACGCGCTACACTACTGTTCCTTCTCCAAGTTCGAAGGTTTGCACGTGTTCTCATGTTGCTTCGCTGCAGCTCCAATTCCTTCCTCCAAGTTTGAAAGTTCTCACACTACTTCGTTGTAGTTCTTTCCTCCAAGTTCGAAGGTTCTCAATTCCTTCTCTCCACCTTTGAAGGTTCTCATGTTGCTTCGCTGTTGTTCCTTCTCCAAGTTCAAAGATTCTCACGCTGCTTCGCTGCTGTTCCTTCTCCAAGTCAAAGGTTCTCACGTTGCTTCACTTTTGTTCCTTTTTAAGTGTGGGGTTCTCACGTTGTTTCACTGCAATTTCTTCTCCAAGTTCGAAGGTTCTCACGTTGTACGCTATTTCGTTGTTGTTCCTTCTCTAAATTCTTGAAGGTTCTCACGCTGCTTTGTTGTTGTTCCTTTTCCAAATTCAAAGGTTCTCACGCTACGTTGTTCGAAGGTTCTTCCTCTTACGCTGCATTGCATCGCTGTTCCTTCTACAAGTTCAAAGGTTCTTAGCCCTTAA

mRNA sequence

ATGTCTATTTGTTGCCGATGCCGCTGTTGCCGTTGCCTGCGCCGCTGGCTAGAGGAGCTATGGCGTCAACAACGACCACGACGGCTGGAGAAGGTGCGAGAGAGAGAGAGAGACGATCCGAGGGAGAGAGGCGACGGCGGCGCTCATCGGGCAGAGATTCGATCTGAGACAGCGATTTGCTCTGGTGAACTCAAGTTGCAAGATGATCAAGCTCTTATCATCATAAGCAAAGAAACAATATTTTCGGGGGCATGTACTAGTGACAAGTTTCTTGTAAAGTATAACCCTTTGTTCGAGCCTGATTCTGACGTAGTGACTGTCATGATGACTGAGGCAAGAACTATGAAAAAAAGAATGTCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGACCACCTAAAGAGCCAGATTGAGAACCAAAATATCGTTGAATCAAAAGAAGTTGACGATTCTAAAAAATTTGAACAAAGGACTTCTATTTTCAATCGCATAAAGCTTTCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTCTAACTGCGACAAAAGAAGAAAACCAATGTTTAGTGTCTACCTCCACTCGACCTTCAGCTTTTCAAAGGCTAAGTGTCTTCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGATGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTAAAACTGTTTGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTATTGTCTCGTCAAGTATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTTACGTTGTACGTTGTTGCGTTGTTCCTTCTCCATGTTCGAGGGTTCTTACGCTGTAAGCTACTGTGTTGTTCCTTCTCTAAGTTCGAAGGTTCTTACGATGTTCGAAGGTTCTCCGCTCTACGCTGCTGCATTGCTCCTTCTTCAAGTTCGAAGGTTCTTATGTTGTACGTTGTTGCGTTATTTCTTCTTGAAGTTTTAAGGATCTTACACTGCTTCGTCGTTGTTCCTTCTTCAAGTTTGAGACTTCTCTCCAGGTTTGAAGGTTCTCACGCTGCTTTGCTGCAATTCCTTTCTCTCCAAGTTCAAAGGTTCTCACGCTGCTCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTTACACTGCTTCGTCACTGTTCCTTCTTCAAGTTTGAGACTTCTCTCCAAGTTTGAAGGTTCTCACGTTGCTTCGCTTTCATTCCCCAAGTTCGAAGGTTCTCACGCTACTTCGCTGAAGGAACTTCCTCTAAGTTCGAAGTTTCTCACGTTGTATGTTGCTTGTTCCTTCTCTAAGTTCAAAGATTCTCACGTTGTACTCTACTTCGCTGCTCCTTCTTCAAGTTTCGAAGGTTCTCACGATTTCGAAGGTTCTCAAAAATTCTCATGTTGCTTCGTTGCGGCTCCAATTCCTTCCTCCAAGTTTGAAAGTTCTCACATTGCTTCGTTGCAGTTCTTTCCTCCAAGTTCAAAGGTTCTCAGTGCCTTCTCTCCACGTTTAAAGGTTCTCACGCTGCTTCACTGTTGTTCCTTCTCCAAGTTCAAAGGTTCTCACGCTGCTTCTCTGTTGTTCCTTCTCCAAGTCGAAGATTCTCACGCTACATTGTTTCGCTTGTGTTCCTTCTCCAAGTTTGAAGGTTCTCACGCGCTACACTACTGTTCCTTCTCCAAGTTCGAAGTTCTTTCCTCCAAGTTCGAAGGTTCTCAATTCCTTCTCTCCACCTTTGAAGGTTCTCATGTTGCTTCGCTGTTGTTCCTTCTCCAAGTTCAAAGATTCTCACGCTGCTTCGCTGCTGTTCCTTCTCCAAGTCAAAGGTTCTCACGCTGCTTTGTTGTTGTTCCTTTTCCAAATTCAAAGGTTCTCACGCTACGTTGTTCGAAGGTTCTTCCTCTTACGCTGCATTGCATCGCTGTTCCTTCTACAAGTTCAAAGGTTCTTAGCCCTTAA

Coding sequence (CDS)

ATGTCTATTTGTTGCCGATGCCGCTGTTGCCGTTGCCTGCGCCGCTGGCTAGAGGAGCTATGGCGTCAACAACGACCACGACGGCTGGAGAAGGTGCGAGAGAGAGAGAGAGACGATCCGAGGGAGAGAGGCGACGGCGGCGCTCATCGGGCAGAGATTCGATCTGAGACAGCGATTTGCTCTGGTGAACTCAAGTTGCAAGATGATCAAGCTCTTATCATCATAAGCAAAGAAACAATATTTTCGGGGGCATGTACTAGTGACAAGTTTCTTGTAAAGTATAACCCTTTGTTCGAGCCTGATTCTGACGTAGTGACTGTCATGATGACTGAGGCAAGAACTATGAAAAAAAGAATGTCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGACCACCTAAAGAGCCAGATTGAGAACCAAAATATCGTTGAATCAAAAGAAGTTGACGATTCTAAAAAATTTGAACAAAGGACTTCTATTTTCAATCGCATAAAGCTTTCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTCTAACTGCGACAAAAGAAGAAAACCAATGTTTAGTGTCTACCTCCACTCGACCTTCAGCTTTTCAAAGGCTAAGTGTCTTCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGATGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTAAAACTGTTTGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTATTGTCTCGTCAAGTATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTTACGTTGTACGTTGTTGCGTTGTTCCTTCTCCATGTTCGAGGGTTCTTACGCTGTAAGCTACTGTGTTGTTCCTTCTCTAAGTTCGAAGGTTCTTACGATGTTCGAAGGTTCTCCGCTCTACGCTGCTGCATTGCTCCTTCTTCAAGTTCGAAGGTTCTTATGTTGTACGTTGTTGCGTTATTTCTTCTTGAAGTTTTAAGGATCTTACACTGCTTCGTCGTTGTTCCTTCTTCAAGTTTGAGACTTCTCTCCAGGTTTGAAGGTTCTCACGCTGCTTTGCTGCAATTCCTTTCTCTCCAAGTTCAAAGGTTCTCACGCTGCTCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTTACACTGCTTCGTCACTGTTCCTTCTTCAAGTTTGAGACTTCTCTCCAAGTTTGAAGGTTCTCACGTTGCTTCGCTTTCATTCCCCAAGTTCGAAGGTTCTCACGCTACTTCGCTGAAGGAACTTCCTCTAAGTTCGAAGTTTCTCACGTTGTATGTTGCTTGTTCCTTCTCTAAGTTCAAAGATTCTCACGTTGTACTCTACTTCGCTGCTCCTTCTTCAAGTTTCGAAGGTTCTCACGATTTCGAAGGTTCTCAAAAATTCTCATGTTGCTTCGTTGCGGCTCCAATTCCTTCCTCCAAGTTTGAAAGTTCTCACATTGCTTCGTTGCAGTTCTTTCCTCCAAGTTCAAAGGTTCTCAGTGCCTTCTCTCCACGTTTAAAGGTTCTCACGCTGCTTCACTGTTGTTCCTTCTCCAAGTTCAAAGGTTCTCACGCTGCTTCTCTGTTGTTCCTTCTCCAAGTCGAAGATTCTCACGCTACATTGTTTCGCTTGTGTTCCTTCTCCAAGTTTGAAGGTTCTCACGCGCTACACTACTGTTCCTTCTCCAAGTTCGAAGTTCTTTCCTCCAAGTTCGAAGGTTCTCAATTCCTTCTCTCCACCTTTGAAGGTTCTCATGTTGCTTCGCTGTTGTTCCTTCTCCAAGTTCAAAGATTCTCACGCTGCTTCGCTGCTGTTCCTTCTCCAAGTCAAAGGTTCTCACGCTGCTTTGTTGTTGTTCCTTTTCCAAATTCAAAGGTTCTCACGCTACGTTGTTCGAAGGTTCTTCCTCTTACGCTGCATTGCATCGCTGTTCCTTCTACAAGTTCAAAGGTTCTTAGCCCTTAA

Protein sequence

MSICCRCRCCRCLRRWLEELWRQQRPRRLEKVRERERDDPRERGDGGAHRAEIRSETAICSGELKLQDDQALIIISKETIFSGACTSDKFLVKYNPLFEPDSDVVTVMMTEARTMKKRMSEMQEHINTLMKAIEERDSQIDHLKSQIENQNIVESKEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLVSTSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVSSSMKRKFSVLINTEGSLKVLTLYVVALFLLHVRGFLRCKLLCCSFSKFEGSYDVRRFSALRCCIAPSSSSKVLMLYVVALFLLEVLRILHCFVVVPSSSLRLLSRFEGSHAALLQFLSLQVQRFSRCSAAVPSLQVRRFLHCFVTVPSSSLRLLSKFEGSHVASLSFPKFEGSHATSLKELPLSSKFLTLYVACSFSKFKDSHVVLYFAAPSSSFEGSHDFEGSQKFSCCFVAAPIPSSKFESSHIASLQFFPPSSKVLSAFSPRLKVLTLLHCCSFSKFKGSHAASLLFLLQVEDSHATLFRLCSFSKFEGSHALHYCSFSKFEVLSSKFEGSQFLLSTFEGSHVASLLFLLQVQRFSRCFAAVPSPSQRFSRCFVVVPFPNSKVLTLRCSKVLPLTLHCIAVPSTSSKVLSP

Homology

[Close]

BLAST of Spg009531 vs. NCBI nr
Match: ADN34244.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-28
Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 142 HLKSQIENQNIVES-KEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E  N  +S KE+D+S + +QRTS+F+RIK  TTR SVFQR+S+    EEN+C  
Sbjct: 46  HTTSIVEVDNNYDSYKEMDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKTEENECPT 105

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           ST  R SAF+RLS+ TSKK R STS FDRLK+TDDQ QR+M  L+ K F E + D K+ S
Sbjct: 106 STYARTSAFKRLSISTSKKHRPSTSDFDRLKMTDDQQQREMKTLKAKPFHEENDDDKIHS 165

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
           +V SSMKRK SV INTEGSL V   +++
Sbjct: 166 LVPSSMKRKLSVDINTEGSLTVKPRFII 193

[Close]

BLAST of Spg009531 vs. NCBI nr
Match: KAA0025725.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 7.3e-28
Identity = 82/148 (55.41%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 142 HLKSQIE-NQNIVESKEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E N N    +EVD+S + +QRTS+F+RIK  TTR S FQR+S+   +EENQC  
Sbjct: 105 HTTSIVEVNNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPT 164

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           ST  R SAF+RLS+ TSKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K++S
Sbjct: 165 STYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIRS 224

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
            VSS MKRK SV INTEGSL V   +++
Sbjct: 225 RVSSRMKRKLSVGINTEGSLTVKPRFII 252

[Close]

BLAST of Spg009531 vs. NCBI nr
Match: TYK27425.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 9.5e-28
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 142 HLKSQIE-NQNIVESKEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E + N V SKEVD S + ++RTSIF+RIK STTR SVFQR+S+   +EENQC  
Sbjct: 352 HTVSIVEVDNNQVSSKEVDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPT 411

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           S STR SAF+RLS+ TSKK R STSVF+RLK+T+DQ QR+  +L+ K F E + D K+ S
Sbjct: 412 SISTRSSAFKRLSISTSKKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHS 471

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
            V S MKR  SV INTEGSL V   +++
Sbjct: 472 RVPSHMKRTLSVDINTEGSLTVKPRFII 499

[Close]

BLAST of Spg009531 vs. NCBI nr
Match: KAA0062458.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 9.5e-28
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 142 HLKSQIE-NQNIVESKEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E + N V SKEVD S + ++RTSIF+RIK STTR SVFQR+S+   +EENQC  
Sbjct: 445 HTVSIVEVDNNQVSSKEVDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPT 504

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           S STR SAF+RLS+ TSKK R STSVF+RLK+T+DQ QR+  +L+ K F E + D K+ S
Sbjct: 505 SISTRSSAFKRLSISTSKKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHS 564

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
            V S MKR  SV INTEGSL V   +++
Sbjct: 565 RVPSHMKRTLSVDINTEGSLTVKPRFII 592

[Close]

BLAST of Spg009531 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 9.5e-28
Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 142 HLKSQIENQNIVES-KEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E  N  +S +EVD+S + +QRTS+F+RIK  TTR SVFQR+S+T  +EENQC  
Sbjct: 448 HTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPT 507

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           ST TR SAF+ LS+ TSKK R STS FDRLK+ +DQ QR+M +L+VK F E + D K+ S
Sbjct: 508 STCTRTSAFKSLSISTSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHS 567

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
            V S MKRK SV INTEGSL V   +++
Sbjct: 568 RVPSRMKRKLSVDINTEGSLIVKPRFII 595

[Close]

BLAST of Spg009531 vs. ExPASy TrEMBL
Match: E5GCP7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-28
Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 142 HLKSQIENQNIVES-KEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E  N  +S KE+D+S + +QRTS+F+RIK  TTR SVFQR+S+    EEN+C  
Sbjct: 46  HTTSIVEVDNNYDSYKEMDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKTEENECPT 105

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           ST  R SAF+RLS+ TSKK R STS FDRLK+TDDQ QR+M  L+ K F E + D K+ S
Sbjct: 106 STYARTSAFKRLSISTSKKHRPSTSDFDRLKMTDDQQQREMKTLKAKPFHEENDDDKIHS 165

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
           +V SSMKRK SV INTEGSL V   +++
Sbjct: 166 LVPSSMKRKLSVDINTEGSLTVKPRFII 193

[Close]

BLAST of Spg009531 vs. ExPASy TrEMBL
Match: A0A5A7SMQ5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00040 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-28
Identity = 82/148 (55.41%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 142 HLKSQIE-NQNIVESKEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E N N    +EVD+S + +QRTS+F+RIK  TTR S FQR+S+   +EENQC  
Sbjct: 105 HTTSIVEVNNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPT 164

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           ST  R SAF+RLS+ TSKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K++S
Sbjct: 165 STYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIRS 224

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
            VSS MKRK SV INTEGSL V   +++
Sbjct: 225 RVSSRMKRKLSVGINTEGSLTVKPRFII 252

[Close]

BLAST of Spg009531 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-28
Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 142 HLKSQIENQNIVES-KEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E  N  +S +EVD+S + +QRTS+F+RIK  TTR SVFQR+S+T  +EENQC  
Sbjct: 448 HTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPT 507

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           ST TR SAF+ LS+ TSKK R STS FDRLK+ +DQ QR+M +L+VK F E + D K+ S
Sbjct: 508 STCTRTSAFKSLSISTSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHS 567

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
            V S MKRK SV INTEGSL V   +++
Sbjct: 568 RVPSRMKRKLSVDINTEGSLIVKPRFII 595

[Close]

BLAST of Spg009531 vs. ExPASy TrEMBL
Match: A0A5D3DVW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001190 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-28
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 142 HLKSQIE-NQNIVESKEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E + N V SKEVD S + ++RTSIF+RIK STTR SVFQR+S+   +EENQC  
Sbjct: 352 HTVSIVEVDNNQVSSKEVDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPT 411

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           S STR SAF+RLS+ TSKK R STSVF+RLK+T+DQ QR+  +L+ K F E + D K+ S
Sbjct: 412 SISTRSSAFKRLSISTSKKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHS 471

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
            V S MKR  SV INTEGSL V   +++
Sbjct: 472 RVPSHMKRTLSVDINTEGSLTVKPRFII 499

[Close]

BLAST of Spg009531 vs. ExPASy TrEMBL
Match: A0A5A7V4E9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00430 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-28
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 142 HLKSQIE-NQNIVESKEVDDSKKFEQRTSIFNRIKLSTTRPSVFQRMSLTATKEENQCLV 201
           H  S +E + N V SKEVD S + ++RTSIF+RIK STTR SVFQR+S+   +EENQC  
Sbjct: 445 HTVSIVEVDNNQVSSKEVDYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPT 504

Query: 202 STSTRPSAFQRLSVFTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEVSSDKKLQS 261
           S STR SAF+RLS+ TSKK R STSVF+RLK+T+DQ QR+  +L+ K F E + D K+ S
Sbjct: 505 SISTRSSAFKRLSISTSKKDRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHS 564

Query: 262 IVSSSMKRKFSVLINTEGSLKVLTLYVV 289
            V S MKR  SV INTEGSL V   +++
Sbjct: 565 RVPSHMKRTLSVDINTEGSLTVKPRFII 592

The following BLAST results are available for this feature:

BLAST of Spg009531 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34244.1	2.5e-28	56.08	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0025725.1	7.3e-28	55.41	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK27425.1	9.5e-28	56.76	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0062458.1	9.5e-28	56.76	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0040811.1	9.5e-28	56.08	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg009531 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg009531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCP7	1.2e-28	56.08	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7SMQ5	3.5e-28	55.41	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TGM1	4.6e-28	56.08	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DVW2	4.6e-28	56.76	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V4E9	4.6e-28	56.76	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg009531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009531.1	Spg009531.1	mRNA