Spg009508 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009508
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease P
Location	scaffold9: 25506258 .. 25511854 (-)
RNA-Seq Expression	Spg009508
Synteny	Spg009508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAACATTCTTCTCAACTTCGGAGAGTGTGGTTTTGCTTCCTCACTTAAACAACAGAGAGAGAAGAAAGTTGGACAGTACTGCTGTATGTATTTTGTATTCTGTGATATTATGAATACAATAAAACAAATACACATAAATAGGCAAAGAAAAGGACAGATGGAGAAATCTAACAGGCTAACCAAATAACAGATTTTACATGAATAAAATGGAAGAATAGCCTAGAAGAATATAAAGATAAGTGACATACTATCATCCCCCCGCAAGCGAAACCGGCCTTGGATGGACTGTGAGCTTGGTATGAAGACATTGAAACCGAGCAGTGGCTAGTGGCTTGGTGAGAATATCGGCAAGCTGATCCTCAGACGGAACAAAACGCACGAGAAGTTGTTTGCGTAGAACCTTTTCCCTTATGAAGTGATGGTCTATCTCAATATGCTTAGACCAACTATGAAGAACTGGATTAGCAGCCAAATACGTAGCACTGATGTTATCACAAAGCAATAACAGGGGAGAAGGTGGCTGAAAACCAAGTTCTGAAAGTAGTGACTGAATCCAAGTAAGTTCGGCCGCAGCATTCGATAACCCACGATATTCAGACTCTGCACTAGAACGAGAAACAACCTTCTATTTTCCAGATGACCAGGAAACAAGATTAGACCCAAGAAATACGCAATAGCCACTAGTGCTACGCCAATCATTCGGACAATTAGCCCAATCAGCATCAGTATAACTTGTCAAAGAAAACGGTCCAGAATCTGTGAAAGAAATACCATAATGACATGTGGTTTTAAGGTACCTGAGGATCCGTTTTACCAAATTCCAGTGAGTAGTTGTTGGGGCATGAAGATATTGGCAAGCTTTGTTAACCACAAAACTTAAATCGGGTCGGGTTAATGTACAATATTGCAATGCACCAACGATACTCCTGTAATTTTTAGCATCACTAAGCAACTCACCATCTCTTGCTGAAACAGAAACTCCCGCAGCCATTGGAGTATCCATTGGTTTACATGAACCCATTTCAGCACGCAACAAGAGGTCTTGGAAATATTTCTGCTGTGAAAGGTGCAAAGAGGAGGAGTCTCGATACACCTCAATGCCAAGGAAATAGGATAGATTGCCAAGATCTTTAAGTGCAAAAAGCTTGTTCAAAGAGGATATAAAATTCTGAATAAAAGTGGGATCATTGCCAGTCACAATAATGTCATCTATGTAGATAAGAACCACAACAAAGATGGACAGCTTACTAAAGTAAAATAAAGATGTATCCGACTTAGATGCTTTAAAATCCCAACTCAAGAGACAAGAACTAAGCTTCATAAACCATTCTCTAGGGCTTTGTTTCAAACCATATAAGGCCTTTTTAAGCTTACACACATGATTAGGATTGTTTTTATCAACAAAACCCGGTGGTTGCATCATGTATACATCTTCATGAAGATCACCATTAAGAAAAGCATTGTGAACATCCAACTGACGAATAACCCAATGATGTTTAACAGCAAGTGACAACACAATCCTAATGGTTGTAGGCTTGATTACCGGACTAAATGTTTCAAAATAATCGATCCCATGGGTTTGATCAAAACCTCTAGCAACTAAACGAGCTTTATAGCGTTCCACCGAACCATCAGGCTTAAGCTTAATTCTATAAACCCATTTACAGCTCACAATTTTGTATTCAGATGACGGAGGAACCAATGACCATGTGTTATTTTAAATTAAGGCCTTATACTCTTTATCCATCGCATCTCGCCACTCATCACTTTTAATTGCCACTTTGAAAGTAGTAGGTTCAACTAAGGGTAAAGAAGGAGTGGATGAAGATGCAAGCCAACATTTAGGTTTATGGATTCCAGCCTTAGCTCTTGTTATCATAGGATGAACATTCAGAGATGCAGGCATAGAAGGAACAGAAGTTAAAGGTGAGGGATGAGGAGAATTGATGCACGGGAGAGTAGAAGGGGAGGGAGCGACTGGGGAAGCTACTGGAGTTTGAGGCTACGGTACAAGAGAAACAGGGGAAAAAACAGGGGATGCCACTGGGTTACAAGTCTGATGGTGAGCAAATGAAGTTGCAATGGAAGCGAATCCTGGGGGGATTGATGGAGTAGGAGATGGGTCAGAAACAGAGTTGTTGGGATATTTAGAAGGGGAAGAGGAACTGGGAACACACGCAGCCGAAGACAAAGAAAGGGGGAGGGAGGGTAGACAAAATGGTGATGGATTAAATAAGGAATAATTTTGGGCGTTAGATTTTATAGGACCAAAAGTAAAGGAACTGCTCTTACAAGGAAAAACAGCTTCATTGAAGACCACATGCCTAGAAATATAAAGTTTTCCAGAACAAGGGTCTAGACACAAATATCCCCTATGATCTGAGCTATATCCAAGAAAAAGACATTCAATAGATCGAAATTGAAGCTTATGGTCATTAAAAGGTCTCAAAAAGGGAAAACAAGCACAACCAAAGGATCGAAGAATAGAATAATCAGGAGAATGATCATAAAGCATCAAATACGGAGATTTCGACTTTAAAACAGTAGTAGGTAGGCGATTTATAATGTAAATAGTTGTTTGAAAAGTGAAGCTCCAAAAAGATAAAGGAAGACCGGAATGGGCAAGCAATGAGAGACCAACTTCTACACCATGTCTATTTTTCCTTTCAACACGGCCATTTTGTTGAGGCGTGTAGGGACAGGAGACACGATGAAGTATCCCATGTTGAGAAAGATATTTAGAGAGGTTTCGAAATTCCCCACCCTAATCAGTTTGAAGGCATTTTAATTTCCTATCAAATTGAACTTCCACCATCTTTTTAAAGCTAAGAAAGCAAGCAATGGTATCACTCTTAGATTTCAATAAGTACAGCCATGAAAAGCGTGTATAGTCATCGACAAATAAGAGAAAAAAACGAGCTCCATTGATTGAAACATGAGGGGAAGGACCCCATACATCTGAGTGAACTAATTGAAAGGTGGCAGTAGTTTTTGTGTCAACTAAAGAAAATGGTAAACGATGGCTTTTAGCCATTTGACACGAGTTACAAAAGAAATTAGAACTAGAAACAGCAACACCACATATTGACAAAACTTGATTCAAAATTGTCCCAGCAGGGTGCCCCAAACGGTGATGCCAGTGAGTGTTGGAGGAAACTGAAGACACATAAGTAGCAGGAGACATACGACACAAGGACCGAGAAGAGACATCAGAAGAGGAAGAGGACACTTTGTAGAGACCGTCTTCAAGCTTGCCCTTGAGAAGAATAGTCTTGGTTTGAAGGTCCTTGACAAGGAAAAAGGTAGAGTGAAATTCAACAAAAGCTTGATTATCTTTGCATAAATGAGCAACACTTAAAAGTTTCTTAGATATAGTAGGAGAATGTAAAACGCTACATAAGACAAGAGGTTTAGAAGAAGAAGAAGAAAGACAAGAAGAGCCAATATTTGAAATAGAAAGTTGCTTACCATTGCCAATCGTAATTTGCTCACCACCATTGTAGGGTAGTGGATTGTGTAGGTTGGATACATCCGGTGTCATGTGATGTGTAGCTCCCGAGTCTAAGAACCAAGACTCATCAGGATGGGAGTATTCAGTATGGACAACAAAGGATGCATCAGAGAAACATGGAGGAGGCAGTACAGCATTTGGAGAATTGGTTGGCTGGACAGAATGGACAAGAGCCTGAGGATTGGTATTGTGAGGAGGAGTTTGGTACGATAGGTTGGTCCTATGATGGCAAATGAGGGCTGTGTGCCCAAATTTACCACAAATTTGGCACTGAGGCCGAGAGGAAAGCGATTTGGATGGCCATTGATTATGCTGTTGTGGTTTGCCTAAGATACTGGACTGAAAGCTAGGTTGTTGAGGAGTTGAAGGAGAAGAAAACATGGACTTGGAGAAGTGATTAAATTGAGGAGATGATTTAGTAAATGAGCGGCGATTATTAGAGTGAATGGAGAGAGTGCTAAGATGAACTTGAGCCAAATTCAATTGTTCCACAGAGGTTTGTTTTTCTAATCTTGCTTCATACGCTAACAACAGACTTCAGACATCTTCTAGAGAGGGGCTATCGGACCTATTCTGTATAGTTGTAACGAAAGCATTATACTCGCTTCCTAATCCATCAAGTATGTGAGCTAAATGATCTCGATATGAAATAGGTTCCCCAATAGCCGCAAACTTATCCGTTATCTCTTTAATTTTTGCTAAATATTGACTAACAGAAAGACCTTCCTTCTTTATCTTTTGAAGTTGAGTTTTCAATCCCATTATTCTAGCAGTAGTATTAGAGTCATATGAACGTGACAAAGAAGACCAGATATCAGCAGCGGAAGACAAATTCACTATTTCACCCATCTTCTCCTCAGATAAAGAAGAATAAATCCAACACATTATGAAACGATTGTACCTTTCCCAGCCGATATATTCAGGATTAAGTTGAGTCTGTTCTTGATCAAAAAATTTGGGAGGAGTTGATATCGAACCATCGAGAAATCCAGAGAGCCCATTCGCCAAGACAGCATTGAGAAGCTGCTGCTTCCATAAGAGGAAGTTAGTGTCGTTGAGCTTGACCGCCAAAGGTTGAGGGAGAGTTGGATATGGGTTCGGCCGTGAAGAAGCTAGGTTGAGGAAAAGACTAAGGTGGAGGAGGCTGGAATAAGGGTCTCGGATAAAATTGCTGAGGATTGGGGAAGGTGTTTGATTGTGGATAATAGGGCTGTGCTTGGGAATAAAACGGCTGAGGATTTGAGAGGGGTTGAGGAAAGAATTGAGGGTTGACATTTGGATTGAAGGGAGGGAGCGACTGAGTGTTAACTGGATTTTTGTTTCGATTTGAGGAAGGAGCAGGGGGCGAACAGGGGAGGGATTTGGTGTAGGATTTGGGGTGGGATTAGAAACAGGGTTATGGATTGGGGTTGAAATTGGAGAATTAGGGTTGACAGTAGGAGGATTTGGTTGTTCAGACGAGGTAGACGATGAGCCCTCTTCAACAGCCATTAGGGGAGAAATGAGGTAGCAGCTCTGATACCATAAACAACAGAAAGAGAGAAGAAAGTTGGACAGTACTGCTGTATGTATTTTGTATTCTGTGATATTATGAATACAGTAAAACAAATACACATAAATAGGCAAAGAAAGGGACAGATGGAGCAATCTAACAGGCTAACCAAATAACAGATTTTACATGAATAAAATGGAAGAATAGCCTAGAAGAATATAAAGATAAGTGACATTCTATCATCACTTGGATCTTTTCAAGGTAGATAAACTGTATCTTTCTTCCACTTCCATTTGTCTTAACAACGTATCTCTGTATTTGTATGGCTTAATGTTTTTTTCTTGCTTTCATGGTGTTTATTTCGTTGTGTATTATTAGAGCCTCTAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACCATGATGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGT

mRNA sequence

ATGGTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAACATTCTTCTCAACTTCGGAGAGTGTGGTTTTGCTTCCTCACTTAAACAACAGAGAGAGAAGAAAGTTGGACAGTACTGCTTTGCAATGGAAGCGAATCCTGGGGGGATTGATGGAGTAGGAGATGGGTCAGAAACAGAGAGCAGGGGGCGAACAGGGGAGGGATTTGGTGTAGGATTTGGGGTGGGATTAGAAACAGGGTTATGGATTGGGGTTGAAATTGGAGAATTAGGGTTGACAGTAGGAGGATTTGGTTGTTCAGACGAGGTAGACGATGAGCCCTCTTCAACAGCCATTAGGGGAGAAATGAGAGCCTCTAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACCATGATGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGT

Coding sequence (CDS)

ATGGTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAACATTCTTCTCAACTTCGGAGAGTGTGGTTTTGCTTCCTCACTTAAACAACAGAGAGAGAAGAAAGTTGGACAGTACTGCTTTGCAATGGAAGCGAATCCTGGGGGGATTGATGGAGTAGGAGATGGGTCAGAAACAGAGAGCAGGGGGCGAACAGGGGAGGGATTTGGTGTAGGATTTGGGGTGGGATTAGAAACAGGGTTATGGATTGGGGTTGAAATTGGAGAATTAGGGTTGACAGTAGGAGGATTTGGTTGTTCAGACGAGGTAGACGATGAGCCCTCTTCAACAGCCATTAGGGGAGAAATGAGAGCCTCTAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACCATGATGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGT

Protein sequence

MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

Homology

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BLAST of Spg009508 vs. NCBI nr
Match: XP_038899949.1 (probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-27
Identity = 87/176 (49.43%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MVRFKNRY+VLEVLLDPNKD+   DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + 
Sbjct: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           K V         NP                                       I +L + 
Sbjct: 61  KYV---------NP---------------------------------------ITKLCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+RTISNCPVVFNLLDLS
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRTISNCPVVFNLLDLS 105

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BLAST of Spg009508 vs. NCBI nr
Match: XP_022972913.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-26
Identity = 84/176 (47.73%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + 
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           K V         NP                                       I +L + 
Sbjct: 61  KYV---------NP---------------------------------------ITKLCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDL+
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLT 105

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BLAST of Spg009508 vs. NCBI nr
Match: XP_004139703.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >XP_011659093.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >KGN44681.2 hypothetical protein Csa_016863 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 6.7e-26
Identity = 83/176 (47.16%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MVRFKNRY+V EVLLDPNKD+   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + 
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           K V         NP                                       I ++ + 
Sbjct: 61  KYV---------NP---------------------------------------ITKVCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLS 105

[Close]

BLAST of Spg009508 vs. NCBI nr
Match: XP_022932062.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata] >KAG6607595.1 putative ribonuclease P/MRP protein subunit POP5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037218.1 putative ribonuclease P/MRP protein subunit POP5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-26
Identity = 83/176 (47.16%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + 
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           + V         NP                                       I +L + 
Sbjct: 61  RYV---------NP---------------------------------------ITKLCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDL+
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLT 105

[Close]

BLAST of Spg009508 vs. NCBI nr
Match: KAA0061295.1 (putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa] >TYK09873.1 putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 83/176 (47.16%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MVRFKNRY+V EVLLDPNK++   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + 
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           K V         NP                                       I +L + 
Sbjct: 61  KYV---------NP---------------------------------------ITKLCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLS 105

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BLAST of Spg009508 vs. ExPASy Swiss-Prot
Match: Q6AWV1 (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702 GN=EMB1687 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 62/177 (35.03%), Postives = 86/177 (48.59%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDNILLNFGECGFASSLKQQR 60
           MV FKNRY+++EV LDP+KD+     PII+TQ+N+SKAIKD+IL+NFGECG  SSL   +
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  EKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGL 120
            K V         NP                                       I +L +
Sbjct: 61  VKYV---------NP---------------------------------------ITKLCI 106

Query: 121 TVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                  +R+SRE+++ VW AIT++++I NCPV+ NLLD+S
Sbjct: 121 -----------------------VRSSREEHRQVWLAITLVKSIGNCPVILNLLDIS 106

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BLAST of Spg009508 vs. ExPASy TrEMBL
Match: A0A6J1IBH7 (Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-26
Identity = 84/176 (47.73%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + 
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           K V         NP                                       I +L + 
Sbjct: 61  KYV---------NP---------------------------------------ITKLCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDL+
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLT 105

[Close]

BLAST of Spg009508 vs. ExPASy TrEMBL
Match: A0A0A0K7W3 (Ribonuclease P OS=Cucumis sativus OX=3659 GN=Csa_7G290500 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-26
Identity = 83/176 (47.16%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MVRFKNRY+V EVLLDPNKD+   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + 
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           K V         NP                                       I ++ + 
Sbjct: 61  KYV---------NP---------------------------------------ITKVCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLS 105

[Close]

BLAST of Spg009508 vs. ExPASy TrEMBL
Match: A0A6J1EVL4 (Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.3e-26
Identity = 83/176 (47.16%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + 
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           + V         NP                                       I +L + 
Sbjct: 61  RYV---------NP---------------------------------------ITKLCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDL+
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLT 105

[Close]

BLAST of Spg009508 vs. ExPASy TrEMBL
Match: A0A1S3CEI9 (Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-26
Identity = 83/176 (47.16%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MVRFKNRY+V EVLLDPNK++   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + 
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           K V         NP                                       I +L + 
Sbjct: 61  KYV---------NP---------------------------------------ITKLCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLS 105

[Close]

BLAST of Spg009508 vs. ExPASy TrEMBL
Match: A0A5D3CDD4 (Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-26
Identity = 83/176 (47.16%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQRE 60
           MVRFKNRY+V EVLLDPNK++   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + 
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGLT 120
           K V         NP                                       I +L + 
Sbjct: 61  KYV---------NP---------------------------------------ITKLCI- 105

Query: 121 VGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                 +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Sbjct: 121 ----------------------IRASREDYQNVWAAITMVRSISNCPVVFNLLDLS 105

[Close]

BLAST of Spg009508 vs. TAIR 10
Match: AT1G04635.1 (ribonuclease P family protein / Rpp14 family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-18
Identity = 62/177 (35.03%), Postives = 86/177 (48.59%), Query Frame = 0


Query: 1   MVRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDNILLNFGECGFASSLKQQR 60
           MV FKNRY+++EV LDP+KD+     PII+TQ+N+SKAIKD+IL+NFGECG  SSL   +
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  EKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWIGVEIGELGL 120
            K V         NP                                       I +L +
Sbjct: 61  VKYV---------NP---------------------------------------ITKLCI 106

Query: 121 TVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS 177
                                  +R+SRE+++ VW AIT++++I NCPV+ NLLD+S
Sbjct: 121 -----------------------VRSSREEHRQVWLAITLVKSIGNCPVILNLLDIS 106

The following BLAST results are available for this feature:

BLAST of Spg009508 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899949.1	1.6e-27	49.43	probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]	[more]
XP_022972913.1	3.9e-26	47.73	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]	[more]
XP_004139703.1	6.7e-26	47.16	probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >XP_011659093...	[more]
XP_022932062.1	8.8e-26	47.16	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata] >KAG660759...	[more]
KAA0061295.1	1.1e-25	47.16	putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Spg009508 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWV1	1.6e-17	35.03	Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Spg009508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBH7	1.9e-26	47.73	Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1	[more]
A0A0A0K7W3	3.3e-26	47.16	Ribonuclease P OS=Cucumis sativus OX=3659 GN=Csa_7G290500 PE=3 SV=1	[more]
A0A6J1EVL4	4.3e-26	47.16	Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1	[more]
A0A1S3CEI9	5.6e-26	47.16	Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1	[more]
A0A5D3CDD4	5.6e-26	47.16	Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 ...	[more]

BLAST of Spg009508 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04635.1	1.1e-18	35.03	ribonuclease P family protein / Rpp14 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002759	RNase P subunit Pop5/Rpp14/Rnp2-like	PFAM	PF01900	RNase_P_Rpp14	coord: 143..176 e-value: 1.8E-5 score: 24.9
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	GENE3D	3.30.70.3250	Ribonuclease P, Pop5 subunit	coord: 1..176 e-value: 1.5E-15 score: 59.2
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	SUPERFAMILY	160350	Rnp2-like	coord: 143..176
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	SUPERFAMILY	160350	Rnp2-like	coord: 1..53
None	No IPR available	PANTHER	PTHR10993:SF12	RIBONUCLEASE P/MRP PROTEIN SUBUNIT POP5	coord: 1..176
None	No IPR available	PANTHER	PTHR10993	OCTANOYLTRANSFERASE	coord: 1..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009508.1	Spg009508.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001682	tRNA 5'-leader removal
cellular_component	GO:0030677	ribonuclease P complex