Spg009088 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg009088
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold2: 28315288 .. 28321314 (-)
RNA-Seq ExpressionSpg009088
SyntenySpg009088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGCGGGTCGAGAGTCTGCCAGATATCCATTACGCTCAGCTACTCTTCTCCTTGCTTCTTGGTAGGAATGGTGTTTTCCCTAGTTAAGATTTGTCACTAGATCCTGCAAGAAACAAACTAATACACAAGAAATAAGAAAAAGGTGAAAAACACAAAAAGTAATTAAAAATAAAGCATTGTGTTCCCCGGCTACGACTCTAATTTGATGGAACAACTGGTCGAGGGTCGTATCAAATAAATTTGTAAGTTCACTGATAGGACCTAAATAGTCCTATTTTATCACCTCTAATCTAAGCTTGTTAGAGTTATTTTATGCTTTACTTGTCTTATTTGCAGGATATTTGAGCTTAGTGTAAACCCGAGACTTCCCTTGGATTATTTTCTCTTGTCATCTATAGTGGAAGTTGAATTAAAGTTGTTGTTGTACATTGTTGAAGAAAATGGCAAAGCTTTGTGGTTTCATTGTGGTTCCATTGTTTGGATTAAAGTTGTTTGAATTTATTAATTTTTTTAAAAAAAAAAAGAAAAAAAACAACAACAACAAAGAAAAAGAATAGGAAGCTGAAGGAAATAAAAGGAAAAAAAAAAAAAGAAAAGGAAAGGAAAAAGAGAAAAAAAAAAGAAAATGAAAGGAAATGGAAAGCACTTTCGGTTAGTGCTTTAAGTCAAGGATCCACCACCGCCTCAGCCCAATTTCAGCAATTTTGCTCATCCTTTTCCCATCCAATTTACAGAGCATTTCGAGGGAGAGAGTGAAGGAAGAAGAAGAAGGAGTTTGCTAGGGTTTTGAGGTTGAAGAAGAGAGGAAAAAGCTCAAGCACAAGCAACCATGACAGAATCTGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCAGTTTGAGCTACACAAGAAGAACTAAGATGTGACGCCTGGTTTTCTTGAAATTTAATCCATTTTCTAACAAATTTCATGAATGAAGCTTGAGCTAAAACTGATGTTAAGTTAATGGTTTTTGAAATGAAAAACAGAGCACAGAATTTTCGTGCAAATAAAGAGGATCTCTAGTTTTCACTGGTTTTTCAAGCATTCTGGGGTATACAGGTTGAATTAGAAGCTCAATTTGGTATGGTTGGAAAGCGTATTCAATTTCCTATAACTTTCATGAATAATTCGTGAGCCAAAAATGACTAGAAGTAGGTTTAATTTCAGGAGAAAGGTAGAGGGTAGCAGAGAAGCACGAATCTGTATTTGTTGTGTTCGGGAGATTTCTGGACAAATCTGTTGGGAATCTCGTTTTAATTCCTTCAGGTAAGTTTTAGAGGGTTCCCAAAGGAAGGGTTTGATATATAGTACATTAATGTTGGTCAAGTATTGAGGAAGTTATGAGTGTTGGAAGTTAGGGTAGTGAATTTGGAAAATCTGGAAAAAGGGTGTAAAGTGTGATTTTAATTCTAGAGTTTAGAATTCATGAGCATAGAAAGACAAGACTATTTATGGTTCTGATGCTCGGTTTTGGTTGTTTGACAGACCAAGAGGAAATCGGCCGAGTCTGCAAACCAGGGAACTAGCCAAGACTGTGAGTGACAAAACAAATTTCAAAAATTATTTCTAAACAGTTGTTCATGATTAGATGTTTTACATGCTTTTCTATGAATGATACATGATTTCTATGAATGGCTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGATTTATATACGAGCACGTGATTATTGACTTTCTGAAAAGTAGTTGAAACGATATCATTTTAAGCAAAGTATGTATTAGCGAGTATTGTTTAAAGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTGAGATTTACGAAAGATAAAGATAAGCAGGCATGTTTTAATGTTTCCATGTGATTTTTTGAGACTTTTATAGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGGCGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGACGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGTGGGCCCCACTACATCGTAGAGCTAGTAAACATTGGTTGTACTGGACGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAATGTTTGATATACTTGTTATGTCTTGCTAGATTTTTAATGATGTACTTGTGGAGTATTTGAGAAAGCTTTTATCATTACACGTTTATGTTTAACGCTTTGGTTGAACAGATTTATACGTTTAAAGGGTTATCACGTGTTCTGATTTGCGGATTTACAGTTTTAAATTTAGTCACTCACTGGCTTCGTAGCTCACTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCTTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCGACTTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTTTTTGTATTGTAAATGTCTTTGTAAGAAGTGGATATGTTTTTGGTTCTAATAGCTCTATCAGGTTTATTTTCCAAACTGAGTTAAGTCAGGGCTGCACTTCATATATGTTAAAAGGTTAGAGATTCCGCTGTGTTGTGTTACATGTAAAGTATTGTATATCTAAGACTAGTATGTTTATCAGGTTCAATGATTCAGCAGGGTCAACAGGTATCGTCAAAGGAGGACGATGTCTATTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGCAGGGGGTGTGACAACTTGGTATCAAAGCAGTTAGCTCCATGGGAAATGAGACATAGTAGTTATCGCTAAGAAGAATCTAGGAAGTAAATAGTTAGACGTTGAGTCAGTTCAGATGGAACTGGCAGAGTATGGTCCAAGTATGGATAAGAGTGAGTCCAGTCAGGACTAGAATGTGGGTAGAAGTTTAGTATCATGCATCTGAGTTCAGTATCTATAGCATGTCTGATGTGTTGATATGTTATAGGAGTCATGCCACCACGTACCAGAAGACATGATCGCTTGATCGAAGGTCGAATAATTAATACGGAATTTGTCGCAGATATGCATTAATCCAAGTATAAATTAACACAATCAAGTAGTACCTAGAGAGTTCTAGGGTCGAATCCACAGGGAAGGGCTGTTGAGAGTTTTAACATCTTGCTGATTAAACTCTTGTACGCATGGTATCGTAACAATAAAAAAAATGTTGTTTGGAATTGGTTGATAAAACACTGCAGTAAACATAAAATATGCGATGAGAGTTAAGGAAAATATCGGATGACAAGGCTATCAAGGCTTTCGCTGCGACGACCTCATGCGTTTATAAGTAACCTCGTAACGCATACTTTGACTAATTGATCCATTAATGCCTAAGTGAGAAATAAGCACAAGATTCCCTTCCGGTACTACTTATGCGTTTGGCATAGAACTAACAACTGTTTTGTTTAATTAGCTTATGCGTTGGTTCAGTTCTCTACTAACTTGCAAGTGACTGCGTTAGGCCTAACATAGTCTAAGTTCATTCATGCACTATCTTATAGCGGTAGTATTGAGTCTAATACTACCAAGACTACATGTAATGTGCTAGCTTGCTCTACTTAGATATTTCCACATGTGTTACCTCTCAGGGATTTATCATACTGCTACCGCATCCGGCTGACCAGGCGGGAGTTAGTAATGAAAACATTATTGCATCTAAGTAGAAGGCATTAATTTCTCGTTCAATCAAAGTGTACGCATACAAAATAAACTTGTCACCGCATGGGTGCCTAAGCTAATCCTTGATAAAAGAAAATTAGCTCATGCTGACAAAGAAATACACTAAGCAATACATTCTAGTGCAATACAAGTCTACCCTGCGTTGGTATCCTTTCTTCTGACTTCTCTTAGTCCTTGCTCTCTGGTCTCGCCTCTCTCCTCCCTCCCTTCTCTTGTGCAGGTGGATGCTTCTTATAGGCTGAGGAGGCTGACTTCTCCGAGAAATTGGTATGTGTTCCCTAGTTATCCTTCGTCAGCTGGTACATCAGTCACATGTCAACGAGATCTTTTCATCCAGCTTTCCTTGTACGAATAGCTCTGGGATCTGCGTCTGCGCTGAAGAAAACTTGGGCAACAAACAACTATCCTTTTAATGCGTTAGCGCCTTAAAAACATATAATTTCTTACCGCATCTATAAATATTGTCTTCCGTAGAAAACTATCGCAATTCCCTTATCTTTATGCGCTAGATTGGTGCAACTATGTTCTTTTTAGCCTTATTTAGCTTAAATTTAAGGGAGAAATAACTTGCTTATTGCAAGTTATCAAACCCCCAAACTTAAACTATTGTTTGTCCTCAAGCAATGCCTACTATCCACTTTGCGAAAATGACTTAGCTCAACAACTTTTGACTCCTTCCTCTCATTTCCTTTTTCTTTTCCTAGAGCATACTGGGCAGGATTTGGCCTTTCGAAGAATTTCCTAATTGGCTGAAGAAAACTCCTTGCTTAGAATCTAGCCTGCGACGACTCCGCCTATTCTCTTCTATTTAGGTTAAGAACACAACCCCCTTTTTTTTATTTATTTTTATGTTTTTTAAGTAGACATTAATTATCGACATCAAAACGCATGCTTTCTTTTTGGCTTACCCACATTTGTGATGAAGGGTATCCAACTACAGGCATTACATTTTTTTACTGCCCTAAACGCTCATGGAATGCGGATACATCTTCGTGCAGTGGCAAACTATGGGTGTCATGAATGCCCATGGCTACAAACACATCTTAAACCAGAGGAACGCATATTCTTTATATGATACTTGCGCTAACTATCACACCCTCCAACTTAAATTGGACAATGTTCTCATTGTCCCCCAAACTTACATTGGAGCAAGGAGGGTGAAAGCTGAGATGCGATAGGGCCTAATCTTAAGGAAATTTTCCGAAGGCAATGAGAAAATAAAGGCAAAGGGAAAATGCGGCCAGAGAAGAGAAACTAGGAAGAATGGGATGTGCGAGGCAAAAAACTGTCGATCTAATGCAAAGAATTTAATGGACTAAGGCACTATATAAGGGCAGGAAGGAAATGCAAAGCGAATTCAGATGAAAGCAATTTTCATTAATGCGACATGAAAATTTACACAGATAATATTCGGTGCATTACAAAAGAACATAAAATTGAGAAGCAAAAAGAGAAAGAAAATATAAATCTACTGTGGCGGCGGGGCCATGGGTGCGCGTTGTTGAGATGTTCCAGCGCCATCAGGTCTAGGCAGGCGCACGAAGAGATCTGGCGCAACTGGGAGCTGACCGAAAGAATTGGTCCAGCACACTAAAAATAGCATCAGTGAATTGATGCGCTGGGACAACTCCTCTTGCTGCCTGCGCAGGGGCCCCACTGCTTCGTTTATCATCTGCCACAGCTCTGAGAAAATGAGCGCTGTCTCCATGTCAAGGGTTAGGACAGACGTAGTATTGCGTGCGCTGGCAGATGGGCTAGTTTGTGGCTGGGAGCTCGGCGCAGGTTCATTGACTTGTTGGCGCGGAGGGTCTGGCAAAGGAATTTCGTGAACTTCTACTTGGTGCACAGTCTCCATGCACTGGTTAGGTAGAAGGGGCCGTCGGTCAGGTGATGGCTGTGGCAGCAAGGATTCTTGGTTCAAGGCGTAGACAGAAGTTTCCTGCGCCGAAGGGGCTTGTTGTGCGTTCCTTGCTGCAGCATGAGGATTGCGGCCTGCGGTCTGTTTGCGCCTCTTCTTCTTTGGTGCTTCAAGCACAGGGGCATTTTTCGGTGGTCATGGGAGCAGGGGCTTGTCACCGAGCCTCTGCCTGCAGACGCAGATTGTGTGTGCGCGTGATGCGCACCCACCATTGCTCATCAAAAGTCTACCGCATAGGTCAGATTTCTTCATTCGGAGAGGCCAGTAGACCCGTCATGCGGCAGAGTCGCGTCACAAGCCATGGGCAAAACATTGCGCCTTTGGATTTGGAAGCGGTTTGGCGCAAAGATTCAGATAAAATGCGGCCCAGGTCAAGAGGAATCCCGCGCAATATGCAATAG

mRNA sequence

ACAGCGGGTCGAGAGTCTGCCAGATATCCATTACGCTCAGCTACTCTTCTCCTTGCTTCTTGGATATTTGAGCTTAGTGTAAACCCGAGACTTCCCTTGGATTATTTTCTCTTGTCATCTATAGTGGAAGTTGAATTAAAGTTGTTGTTGTACATTGTTGAAGAAAATGGCAAAGCTTTGTGGTTTCATTGTGGTTCCATTGTTTGGATTAAAGTTACCAAGAGGAAATCGGCCGAGTCTGCAAACCAGGGAACTAGCCAAGACTGTTATATTCCGTTGTTGGCGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGACGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGTAGAGATCGAGCTCTTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCGACTTCCAGTTCAATGATTCAGCAGGGTCAACAGGTATCGTCAAAGGAGGACGATGTCTATTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGACGTTGAGTCAGTTCAGATGGAACTGGCAGAGTATGGTCCAAGTATGGATAAGAGTGAGTCCATCTACCCTGCGTTGGTATCCTTTCTTCTGACTTCTCTTAGTCCTTGCTCTCTGGTCTCGCCTCTCTCCTCCCTCCCTTCTCTTGTGCAGGTGGATGCTTCTTATAGGCTGAGGAGGCTGACTTCTCCGAGAAATTGGGGCCCCACTGCTTCGTTTATCATCTGCCACAGCTCTGAGAAAATGAGCGCTGTCTCCATGTCAAGGGTTAGGACAGACGTAGTATTGCGTGCGCTGGCAGATGGGCTAGTTTGTGGCTGGGAGCTCGGCGCAGAAGGGGCCGTCGGTCAGGTGATGGCTGTGGCAGCAAGGATTCTTGGTTCAAGGCGTAGACAGAAGTTTCCTGCGCCGAAGGGGCTTGTTGTGCGTTCCTTGCTGCAGCATGAGGATTGCGGCCTGCGGTCTGTTTGCGCCTCTTCTTCTTTGGTGCTTCAAGCACAGGGGCATTTTTCGGTGGTCATGGGAGCAGGGGCTTGTCACCGAGCCTCTGCCTGCAGACGCAGATTGTGTGTGCGCGTGATGCGCACCCACCATTGCTCATCAAAAGTCTACCGCATAGGTCAGATTTCTTCATTCGGAGAGGCCAGTAGACCCGTCATGCGGCAGAGTCGCGTCACAAGCCATGGGCAAAACATTGCGCCTTTGGATTTGGAAGCGGTTTGGCGCAAAGATTCAGATAAAATGCGGCCCAGGTCAAGAGGAATCCCGCGCAATATGCAATAG

Coding sequence (CDS)

ACAGCGGGTCGAGAGTCTGCCAGATATCCATTACGCTCAGCTACTCTTCTCCTTGCTTCTTGGATATTTGAGCTTAGTGTAAACCCGAGACTTCCCTTGGATTATTTTCTCTTGTCATCTATAGTGGAAGTTGAATTAAAGTTGTTGTTGTACATTGTTGAAGAAAATGGCAAAGCTTTGTGGTTTCATTGTGGTTCCATTGTTTGGATTAAAGTTACCAAGAGGAAATCGGCCGAGTCTGCAAACCAGGGAACTAGCCAAGACTGTTATATTCCGTTGTTGGCGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGACGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGTAGAGATCGAGCTCTTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCGACTTCCAGTTCAATGATTCAGCAGGGTCAACAGGTATCGTCAAAGGAGGACGATGTCTATTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGACGTTGAGTCAGTTCAGATGGAACTGGCAGAGTATGGTCCAAGTATGGATAAGAGTGAGTCCATCTACCCTGCGTTGGTATCCTTTCTTCTGACTTCTCTTAGTCCTTGCTCTCTGGTCTCGCCTCTCTCCTCCCTCCCTTCTCTTGTGCAGGTGGATGCTTCTTATAGGCTGAGGAGGCTGACTTCTCCGAGAAATTGGGGCCCCACTGCTTCGTTTATCATCTGCCACAGCTCTGAGAAAATGAGCGCTGTCTCCATGTCAAGGGTTAGGACAGACGTAGTATTGCGTGCGCTGGCAGATGGGCTAGTTTGTGGCTGGGAGCTCGGCGCAGAAGGGGCCGTCGGTCAGGTGATGGCTGTGGCAGCAAGGATTCTTGGTTCAAGGCGTAGACAGAAGTTTCCTGCGCCGAAGGGGCTTGTTGTGCGTTCCTTGCTGCAGCATGAGGATTGCGGCCTGCGGTCTGTTTGCGCCTCTTCTTCTTTGGTGCTTCAAGCACAGGGGCATTTTTCGGTGGTCATGGGAGCAGGGGCTTGTCACCGAGCCTCTGCCTGCAGACGCAGATTGTGTGTGCGCGTGATGCGCACCCACCATTGCTCATCAAAAGTCTACCGCATAGGTCAGATTTCTTCATTCGGAGAGGCCAGTAGACCCGTCATGCGGCAGAGTCGCGTCACAAGCCATGGGCAAAACATTGCGCCTTTGGATTTGGAAGCGGTTTGGCGCAAAGATTCAGATAAAATGCGGCCCAGGTCAAGAGGAATCCCGCGCAATATGCAATAG

Protein sequence

TAGRESARYPLRSATLLLASWIFELSVNPRLPLDYFLLSSIVEVELKLLLYIVEENGKALWFHCGSIVWIKVTKRKSAESANQGTSQDCYIPLLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRSTSSSMIQQGQQVSSKEDDVYWLHAISLTKLADVESVQMELAEYGPSMDKSESIYPALVSFLLTSLSPCSLVSPLSSLPSLVQVDASYRLRRLTSPRNWGPTASFIICHSSEKMSAVSMSRVRTDVVLRALADGLVCGWELGAEGAVGQVMAVAARILGSRRRQKFPAPKGLVVRSLLQHEDCGLRSVCASSSLVLQAQGHFSVVMGAGACHRASACRRRLCVRVMRTHHCSSKVYRIGQISSFGEASRPVMRQSRVTSHGQNIAPLDLEAVWRKDSDKMRPRSRGIPRNMQ
Homology
[Close]
BLAST of Spg009088 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-11
Identity = 57/121 (47.11%), Postives = 63/121 (52.07%), Query Frame = 0 

Query: 92  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSA 151
           PL  LSVL DND VVSAG+APLRQRRWEC                VEIEL VPD LPTSA
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSA 161

Query: 152 ESSRSTSSSMIQ---------------------QGQQVSS----KEDDVYWLHAISLTKL 173
           ESSRS SS+ ++                     QG  + S    + DDV WLHAI   K 
Sbjct: 162 ESSRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWIVRGDDVCWLHAIFRAKT 221

[Close]
BLAST of Spg009088 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-11
Identity = 57/121 (47.11%), Postives = 63/121 (52.07%), Query Frame = 0 

Query: 92  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSA 151
           PL  LSVL DND VVSAG+APLRQRRWEC                VEIEL VPD LPTSA
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSA 161

Query: 152 ESSRSTSSSMIQ---------------------QGQQVSS----KEDDVYWLHAISLTKL 173
           ESSRS SS+ ++                     QG  + S    + DDV WLHAI   K 
Sbjct: 162 ESSRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWIVRGDDVCWLHAIFRAKT 221

[Close]
BLAST of Spg009088 vs. NCBI nr
Match: KAA0045180.1 (uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-09
Identity = 44/74 (59.46%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 70  IKVTKRKSAESANQGTSQDCYI-PLLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLV 129
           +K+  R +  S   G      I  L  LSVL DND VVSAGRA LRQRRWEC VEIEL V
Sbjct: 121 MKILPRGNRPSLQTGELDKTVIFSLSTLSVLCDNDDVVSAGRALLRQRRWECQVEIELPV 180

Query: 130 PDTLPTSAESSRST 143
           PDTLPTSA+ S  T
Sbjct: 181 PDTLPTSAKVSDQT 194

[Close]
BLAST of Spg009088 vs. NCBI nr
Match: TYK27372.1 (uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 6.3e-09
Identity = 39/50 (78.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 93  LLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST 143
           L  LSVL DND VVSAGRA LRQRRWEC VEIEL VPDTLPTSA+ S  T
Sbjct: 119 LSTLSVLCDNDDVVSAGRALLRQRRWECQVEIELPVPDTLPTSAKVSDQT 168

[Close]
BLAST of Spg009088 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 8.5e-06
Identity = 51/115 (44.35%), Postives = 55/115 (47.83%), Query Frame = 0 

Query: 93  LLALSVLRDNDVVVSAG------------RAPLRQR---RWECW---------------- 152
           L  LSVLRDND VVSAG            RAPL +R   RW  W                
Sbjct: 540 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 599

Query: 153 -----VEIELLVPDTLPTSAESSRSTS-SSMIQQGQQVSSKEDDVYWLHAISLTK 171
                VEIEL VPDTLPTSAESS S S S+ I +G       DDV WLH +   K
Sbjct: 600 VLVMPVEIELSVPDTLPTSAESSESNSRSAGIVRG-------DDVCWLHVVFRAK 647

[Close]
BLAST of Spg009088 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-11
Identity = 57/121 (47.11%), Postives = 63/121 (52.07%), Query Frame = 0 

Query: 92  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSA 151
           PL  LSVL DND VVSAG+APLRQRRWEC                VEIEL VPD LPTSA
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSA 161

Query: 152 ESSRSTSSSMIQ---------------------QGQQVSS----KEDDVYWLHAISLTKL 173
           ESSRS SS+ ++                     QG  + S    + DDV WLHAI   K 
Sbjct: 162 ESSRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWIVRGDDVCWLHAIFRAKT 221

[Close]
BLAST of Spg009088 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-11
Identity = 57/121 (47.11%), Postives = 63/121 (52.07%), Query Frame = 0 

Query: 92  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSA 151
           PL  LSVL DND VVSAG+APLRQRRWEC                VEIEL VPD LPTSA
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSA 161

Query: 152 ESSRSTSSSMIQ---------------------QGQQVSS----KEDDVYWLHAISLTKL 173
           ESSRS SS+ ++                     QG  + S    + DDV WLHAI   K 
Sbjct: 162 ESSRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWIVRGDDVCWLHAIFRAKT 221

[Close]
BLAST of Spg009088 vs. ExPASy TrEMBL
Match: A0A5A7TPS6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G001810 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-10
Identity = 44/74 (59.46%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 70  IKVTKRKSAESANQGTSQDCYI-PLLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLV 129
           +K+  R +  S   G      I  L  LSVL DND VVSAGRA LRQRRWEC VEIEL V
Sbjct: 121 MKILPRGNRPSLQTGELDKTVIFSLSTLSVLCDNDDVVSAGRALLRQRRWECQVEIELPV 180

Query: 130 PDTLPTSAESSRST 143
           PDTLPTSA+ S  T
Sbjct: 181 PDTLPTSAKVSDQT 194

[Close]
BLAST of Spg009088 vs. ExPASy TrEMBL
Match: A0A5D3DV36 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00500 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-09
Identity = 39/50 (78.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 93  LLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST 143
           L  LSVL DND VVSAGRA LRQRRWEC VEIEL VPDTLPTSA+ S  T
Sbjct: 119 LSTLSVLCDNDDVVSAGRALLRQRRWECQVEIELPVPDTLPTSAKVSDQT 168

[Close]
BLAST of Spg009088 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-06
Identity = 51/115 (44.35%), Postives = 55/115 (47.83%), Query Frame = 0 

Query: 93  LLALSVLRDNDVVVSAG------------RAPLRQR---RWECW---------------- 152
           L  LSVLRDND VVSAG            RAPL +R   RW  W                
Sbjct: 540 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 599

Query: 153 -----VEIELLVPDTLPTSAESSRSTS-SSMIQQGQQVSSKEDDVYWLHAISLTK 171
                VEIEL VPDTLPTSAESS S S S+ I +G       DDV WLH +   K
Sbjct: 600 VLVMPVEIELSVPDTLPTSAESSESNSRSAGIVRG-------DDVCWLHVVFRAK 647

The following BLAST results are available for this feature:
BLAST of Spg009088 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037581.13.0e-1147.11reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.13.0e-1147.11reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0045180.11.7e-0959.46uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa][more]
TYK27372.16.3e-0978.00uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa][more]
KAA0065516.18.5e-0644.35uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
BLAST of Spg009088 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg009088 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTP31.5e-1147.11Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M61.5e-1147.11Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7TPS68.0e-1059.46Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DV363.1e-0978.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7VGQ54.1e-0644.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg009088 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg009088.1Spg009088.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity