Spg008950 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008950
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA ligase
Locationscaffold11: 11122779 .. 11123950 (-)
RNA-Seq ExpressionSpg008950
SyntenySpg008950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGGGGAAAAAACTAGAGAGTGGTTTTCTCTGACCTTTTTGTTTATATAAATCAGGTCTCCCACATGGGTTTTTCTTGCCAAACTACAATCCCTTCCCCTTTGTGCAGATCTATTCTGTTTGTTTCCCAAGAAAACATGGCTCAGAAAACTCTTCTCTCCCTCACCTTCCTGCTTCTCTTTCTGGGTTTCTCCTTTCTCATTTCTTCTTCTGCTGTTCCCACTACAAGTAACCCTCTCTCTCTATCTCTCAATTCACTTTGATTTTCCTTTTTTTTTTTCTTCTTTCAATTTCTAATAGTTTTTTTCTAATGAATCTCTGAACTTAATTTCTTGCCTAACAGGAATCCTCAAATCAACTTTTGATCACCCATCTGCTCAAGATTTTGTTTTTCAGGTCTCTCTCTTTCTCTCTCTCTCTGTTATTCTGGAGAAAGTTTTAATTTTCTCAGCAACCAAACAGCTTTAATTTGATTGAGAAATTGAAGTGAGTTTTGATGTACAATTTTTGTAGGATGTAGGAGATTTGGAGATGGACGGTGGAGATTCATTTGATTTGGTGGAGGAAAGATTGTTTCAAGGAAGGATGGTTTTGGAGAACAATGACTATCCTGGCACAGGGGCAAACAATCACCATGATCCAAAGTCTCCTGCAAAACCTTAAGTTTTGCAAATTACTGTCGTCTTGATAACGATTTTGTTTTTTGTTTTTTGTATTTGAAGATTAAATATGTCTTTGGATCTTAACCAAATTTTTGGAATAAAGAGATTAGTTTTTGAAAATTTATTCTTTTTATTTCTATAAATTTGGTTAAGGTTTCAAAACAAAGGATTGAAAACAAAATCTATGGGATGGTTTGTAGAGATTGAAAATAGGTAAGAAGTTTATTAGAAAATTTAAGGATGGAAAGAGAAAAGAAAAGCAAAGGGCAATTCTGTCTTTTTACTCGGTGGCTTTTAGCTAGTCTCCTAATAAATGAGTGGAATGGTTCACTTTTGTGCAGAAAATTAAAATTAGTATTTGTTTGGACTTTTTCCTTTGTAATATATATACAAGTTTCTTGGCTTGATTATTATTGTATATTCTATTCAATTCACTAGTTTGTGTTGTAACTTATAGTTTAGTAATTTATTTTTTTTTTTTGGGTTAAATAAATAATTTGAGTCCTTG

mRNA sequence

ATGGGTTTTTCTTGCCAAACTACAATCCCTTCCCCTTTGTGCAGATCTATTCTGTTTGTTTCCCAAGAAAACATGGCTCAGAAAACTCTTCTCTCCCTCACCTTCCTGCTTCTCTTTCTGGGTTTCTCCTTTCTCATTTCTTCTTCTGCTGTTCCCACTACAAGAATCCTCAAATCAACTTTTGATCACCCATCTGCTCAAGATTTTGTTTTTCAGGATGTAGGAGATTTGGAGATGGACGGTGGAGATTCATTTGATTTGGTGGAGGAAAGATTGTTTCAAGGAAGGATGGTTTTGGAGAACAATGACTATCCTGGCACAGGGGCAAACAATCACCATGATCCAAAGTCTCCTGCAAAACCTTAA

Coding sequence (CDS)

ATGGGTTTTTCTTGCCAAACTACAATCCCTTCCCCTTTGTGCAGATCTATTCTGTTTGTTTCCCAAGAAAACATGGCTCAGAAAACTCTTCTCTCCCTCACCTTCCTGCTTCTCTTTCTGGGTTTCTCCTTTCTCATTTCTTCTTCTGCTGTTCCCACTACAAGAATCCTCAAATCAACTTTTGATCACCCATCTGCTCAAGATTTTGTTTTTCAGGATGTAGGAGATTTGGAGATGGACGGTGGAGATTCATTTGATTTGGTGGAGGAAAGATTGTTTCAAGGAAGGATGGTTTTGGAGAACAATGACTATCCTGGCACAGGGGCAAACAATCACCATGATCCAAAGTCTCCTGCAAAACCTTAA

Protein sequence

MGFSCQTTIPSPLCRSILFVSQENMAQKTLLSLTFLLLFLGFSFLISSSAVPTTRILKSTFDHPSAQDFVFQDVGDLEMDGGDSFDLVEERLFQGRMVLENNDYPGTGANNHHDPKSPAKP
Homology
BLAST of Spg008950 vs. NCBI nr
Match: KAG6596972.1 (hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028446.1 hypothetical protein SDJN02_09627 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 5.8e-29
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 0

Query: 25  MAQKTLLSLTFLLLFLGFSFLISSSAVPTTRILKSTFDHPSAQDFVFQDVGDLEMDGGDS 84
           M  K LL LTFLLLFL F+FLISS+AVPTTR+L+S FD PSAQ  VFQD  DLE+ G DS
Sbjct: 1   MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS 60

Query: 85  FDLVEERLFQGRMVLENNDYPGTGANNHHDPKSPA 120
            + V+ERL +GR+VLENNDYPGTGANNHHDPKSPA
Sbjct: 61  LEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95

BLAST of Spg008950 vs. NCBI nr
Match: KGN59481.1 (hypothetical protein Csa_001422 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 2.7e-26
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 0

Query: 34  TFLLLFLGFSFLISSS---AVPTTRILKSTFDHPSAQDFVFQDVGDLEMDGGDSFDLVEE 93
           TF LLFL FSFL+SS+   AVPTTRILKSTFDHPS Q  V QDV D+E+  GDSF    E
Sbjct: 7   TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSF----E 66

Query: 94  RLFQGRMVLENNDYPGTGANNHHDPKSPAKP 122
           RLF+GR++LENNDYPGTGANNHHDPKSPAKP
Sbjct: 67  RLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

BLAST of Spg008950 vs. NCBI nr
Match: KAG7017658.1 (hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 4.6e-26
Identity = 71/98 (72.45%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 25  MAQKTLLSL-TFLLLFLGFSFLISSSAVPTTRILKSTFDHPSAQDFVFQDVGDLEMDGGD 84
           M QK  LSL   LLLFLGFS L+SS AVPTTRI KSTFD PSAQDFVFQDV DLE +GGD
Sbjct: 1   MGQKISLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60

Query: 85  SFDLVEERLFQGRMVLENNDYPGTGANNHHDPKSPAKP 122
            F         GR+VLENNDYPGTGANNHHDP +PAKP
Sbjct: 61  LF---------GRLVLENNDYPGTGANNHHDPNTPAKP 89

BLAST of Spg008950 vs. NCBI nr
Match: KAG6580910.1 (hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 7.9e-26
Identity = 71/98 (72.45%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 25  MAQKTLLSL-TFLLLFLGFSFLISSSAVPTTRILKSTFDHPSAQDFVFQDVGDLEMDGGD 84
           M QK  LSL   LLLFLGFS L+SS AVPTTRI KSTFD PSAQDFVFQDV DLE +GGD
Sbjct: 1   MGQKISLSLQRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60

Query: 85  SFDLVEERLFQGRMVLENNDYPGTGANNHHDPKSPAKP 122
            F         GR VLENNDYPGTGANNHHDP +PAKP
Sbjct: 61  LF---------GRFVLENNDYPGTGANNHHDPNTPAKP 89

BLAST of Spg008950 vs. NCBI nr
Match: KAA0053852.1 (hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0

Query: 34  TFLLLFLGFSFLISSS---AVPTTRILKSTFD-HPSAQDFVFQDVGDLEMDGGDSFDLVE 93
           TF LLFL FSFL+SSS   AVPTTRILKSTF+ HPS Q  V +DV DLE+  GDSF    
Sbjct: 7   TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEIIDGDSF---- 66

Query: 94  ERLFQGRMVLENNDYPGTGANNHHDPKSPAKP 122
           ERLF+GR++LENNDYPGTGANNHHDPKSPA+P
Sbjct: 67  ERLFEGRLILENNDYPGTGANNHHDPKSPARP 94

BLAST of Spg008950 vs. ExPASy TrEMBL
Match: A0A0A0LHJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 0

Query: 34  TFLLLFLGFSFLISSS---AVPTTRILKSTFDHPSAQDFVFQDVGDLEMDGGDSFDLVEE 93
           TF LLFL FSFL+SS+   AVPTTRILKSTFDHPS Q  V QDV D+E+  GDSF    E
Sbjct: 7   TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSF----E 66

Query: 94  RLFQGRMVLENNDYPGTGANNHHDPKSPAKP 122
           RLF+GR++LENNDYPGTGANNHHDPKSPAKP
Sbjct: 67  RLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

BLAST of Spg008950 vs. ExPASy TrEMBL
Match: A0A5A7UDI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002430 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0

Query: 34  TFLLLFLGFSFLISSS---AVPTTRILKSTFD-HPSAQDFVFQDVGDLEMDGGDSFDLVE 93
           TF LLFL FSFL+SSS   AVPTTRILKSTF+ HPS Q  V +DV DLE+  GDSF    
Sbjct: 7   TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEIIDGDSF---- 66

Query: 94  ERLFQGRMVLENNDYPGTGANNHHDPKSPAKP 122
           ERLF+GR++LENNDYPGTGANNHHDPKSPA+P
Sbjct: 67  ERLFEGRLILENNDYPGTGANNHHDPKSPARP 94

BLAST of Spg008950 vs. ExPASy TrEMBL
Match: A0A5B6ZB32 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.7e-19
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 0

Query: 11  SPLCRSILFVSQENMAQKTLLSLTFLLLFLGFSFLISSSAVPTTRILKSTFDHPSAQDFV 70
           S LC   +F    NM  K  L L  L+LFLGF F++SS+AVPT+R LKS    P+AQD  
Sbjct: 27  SDLC---IFCLNINMEHKAFLRL--LVLFLGFYFVLSSAAVPTSRSLKSIEKDPTAQDLF 86

Query: 71  FQDVGDLEMDGGDSFDLVEERLFQGRMVLENNDYPGTGANNHHDPKSPAK 121
            Q V D+  DG    +L+EER  +GRM +E+NDYPGTGANNHHDPK+P +
Sbjct: 87  AQSVMDMRTDG----ELLEERFIEGRMDIESNDYPGTGANNHHDPKTPGR 127

BLAST of Spg008950 vs. ExPASy TrEMBL
Match: A0A6P3YVB6 (uncharacterized protein LOC107405246 OS=Ziziphus jujuba OX=326968 GN=LOC107405246 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 25  MAQKTLLSLTFLLLFLGFSFLISSSAVPTTRILKSTF-DHPSAQDFVFQDVGDLEMDGGD 84
           M QK LL+L  +LL LGFS  + SSA+PTTR+LKST  D  S Q  + Q    LE DG +
Sbjct: 41  MVQKLLLTLLLVLLLLGFSNHLYSSAIPTTRVLKSTMEDSSSPQSLLVQSEVQLE-DGEE 100

Query: 85  SFDLVEERLFQGRMVLENNDYPGTGANNHHDPKSPAK 121
            F++ EE  ++GRMV+EN DYPGTGANNHHDP++P +
Sbjct: 101 LFEVGEEGFYEGRMVMENTDYPGTGANNHHDPRTPGR 136

BLAST of Spg008950 vs. ExPASy TrEMBL
Match: A0A6A6KJS2 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 25  MAQKTLLSLTFLLLFLGFSFLISSSAVPTTRILKSTFDHPSA-QDFVFQDVGDLEMDGGD 84
           M  K  LS+  LLLFLGFSF++SS AVP+TR LKST ++PS+ QDF+ QD  DL +    
Sbjct: 1   MVHKGFLSVRLLLLFLGFSFVLSSLAVPSTRSLKSTEENPSSVQDFLTQDAMDLNLVEEQ 60

Query: 85  SFDLVEERLFQGRMVLENNDYPGTGANNHHDPKSPAK 121
             DL  E    GRM LEN DYPGTGANNHHDPK+P +
Sbjct: 61  VLDL-GEGYINGRMDLENTDYPGTGANNHHDPKTPGR 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6596972.15.8e-2973.68hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN59481.12.7e-2674.73hypothetical protein Csa_001422 [Cucumis sativus][more]
KAG7017658.14.6e-2672.45hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6580910.17.9e-2672.45hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0053852.12.5e-2472.83hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHJ01.3e-2674.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1[more]
A0A5A7UDI61.2e-2472.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5B6ZB327.7e-1953.64Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781... [more]
A0A6P3YVB61.1e-1755.67uncharacterized protein LOC107405246 OS=Ziziphus jujuba OX=326968 GN=LOC10740524... [more]
A0A6A6KJS21.1e-1758.76Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..121
NoneNo IPR availablePANTHERPTHR33474TRANSMEMBRANE PROTEINcoord: 25..120
NoneNo IPR availablePANTHERPTHR33474:SF28PROTEIN, PUTATIVE-RELATEDcoord: 25..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008950.1Spg008950.1mRNA