Spg008916 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008916
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	GLABROUS1 enhancer-binding protein-like
Location	scaffold5: 24765292 .. 24765687 (-)
RNA-Seq Expression	Spg008916
Synteny	Spg008916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCTTCTCCAGATGCCCCGAAGGAGGATGATAAGATGAAAGTTGACGATAACGAGGCTCCTTCAGGGTGCATGGATGGTTTTGTTGCGTTTGAAAGGTCTTTGGGTGCTGTTGGCTTGCCGGAAAGTTTTTTGAAGCCAGGATTAGAGTTAATAGGCCAATCCAAGAGAACAGAGCTGGAGGATGAGTGGAAGAAATTGCATGTTGCAGAATTGGAACTTTTTCTGAAGAGGACGGAGTTGATTAGGGACCAGACGAAGTTGATACTGGAGGCGTACAAGTCATCCGACAAGTAAGGATTTGAACAAGAGTATAATTCATCAGCTTCCAGGTTGATAATTCAGAGCTGAAATTTATTCATGTTGTTTGTTGTTTTGTCTAGGATTTACTGA

mRNA sequence

ATGCTTCCTTCTCCAGATGCCCCGAAGGAGGATGATAAGATGAAAGTTGACGATAACGAGGCTCCTTCAGGGTGCATGGATGGTTTTGTTGCGTTTGAAAGGTCTTTGGGTGCTGTTGGCTTGCCGGAAAGTTTTTTGAAGCCAGGATTAGAGTTAATAGGCCAATCCAAGAGAACAGAGCTGGAGGATGAGTGGAAGAAATTGCATGTTGCAGAATTGGAACTTTTTCTGAAGAGGACGGAGTTGATTAGGGACCAGACGAAGTTGATACTGGAGGCGTACAAGTCATCCGACAAGATTTACTGA

Coding sequence (CDS)

ATGCTTCCTTCTCCAGATGCCCCGAAGGAGGATGATAAGATGAAAGTTGACGATAACGAGGCTCCTTCAGGGTGCATGGATGGTTTTGTTGCGTTTGAAAGGTCTTTGGGTGCTGTTGGCTTGCCGGAAAGTTTTTTGAAGCCAGGATTAGAGTTAATAGGCCAATCCAAGAGAACAGAGCTGGAGGATGAGTGGAAGAAATTGCATGTTGCAGAATTGGAACTTTTTCTGAAGAGGACGGAGTTGATTAGGGACCAGACGAAGTTGATACTGGAGGCGTACAAGTCATCCGACAAGATTTACTGA

Protein sequence

MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTELEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDKIY

Homology

[Close]

BLAST of Spg008916 vs. NCBI nr
Match: XP_038882180.1 (probable transcription factor At1g61730 [Benincasa hispida] >XP_038882181.1 probable transcription factor At1g61730 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 9.1e-44
Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSP+APKEDDKMKVDD+EAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 328 LLPSPEAPKEDDKMKVDDSEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 387

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS K
Sbjct: 388 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSK 426

[Close]

BLAST of Spg008916 vs. NCBI nr
Match: KAE8647673.1 (hypothetical protein Csa_002712 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 91/101 (90.10%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDDKMKVDD E PSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 316 LLPSPDAPKEDDKMKVDDCEVPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 375

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDKIY 102
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS +++
Sbjct: 376 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSRVF 416

[Close]

BLAST of Spg008916 vs. NCBI nr
Match: XP_008439944.1 (PREDICTED: mediator-associated protein 1 [Cucumis melo] >KAA0052747.1 mediator-associated protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDD MKVDD EAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 316 LLPSPDAPKEDDSMKVDDCEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 375

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS K
Sbjct: 376 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSK 414

[Close]

BLAST of Spg008916 vs. NCBI nr
Match: TYK13076.1 (cysteine-rich receptor-like protein kinase 26 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDD MKVDD EAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 407 LLPSPDAPKEDDSMKVDDCEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 466

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS K
Sbjct: 467 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSK 505

[Close]

BLAST of Spg008916 vs. NCBI nr
Match: XP_011658171.1 (STOREKEEPER protein [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 5.9e-43
Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDDKMKVDD E PSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 316 LLPSPDAPKEDDKMKVDDCEVPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 375

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS +
Sbjct: 376 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSR 414

[Close]

BLAST of Spg008916 vs. ExPASy TrEMBL
Match: A0A5D3CRP7 (Cysteine-rich receptor-like protein kinase 26 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006830 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDD MKVDD EAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 407 LLPSPDAPKEDDSMKVDDCEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 466

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS K
Sbjct: 467 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSK 505

[Close]

BLAST of Spg008916 vs. ExPASy TrEMBL
Match: A0A5A7UE20 (Mediator-associated protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003620 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDD MKVDD EAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 316 LLPSPDAPKEDDSMKVDDCEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 375

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS K
Sbjct: 376 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSK 414

[Close]

BLAST of Spg008916 vs. ExPASy TrEMBL
Match: A0A1S3B0Q1 (mediator-associated protein 1 OS=Cucumis melo OX=3656 GN=LOC103484580 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDD MKVDD EAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 316 LLPSPDAPKEDDSMKVDDCEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 375

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS K
Sbjct: 376 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSK 414

[Close]

BLAST of Spg008916 vs. ExPASy TrEMBL
Match: A0A0A0KN49 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_6G516640 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDDKMKVDD E PSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 316 LLPSPDAPKEDDKMKVDDCEVPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 375

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKKLH+AELELFLKRTELIRDQTKLIL+AYKSS +
Sbjct: 376 LEEEWKKLHLAELELFLKRTELIRDQTKLILDAYKSSSR 414

[Close]

BLAST of Spg008916 vs. ExPASy TrEMBL
Match: A0A6J1CLC1 (GLABROUS1 enhancer-binding protein-like OS=Momordica charantia OX=3673 GN=LOC111012492 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 88/99 (88.89%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MLPSPDAPKEDDKMKVDDNEAPSGCMDGFVAFERSLGAVGLPESFLKPGLELIGQSKRTE 60
           +LPSPDAPKEDDKMK+DDNE PSGC++GFVAFER+LGAVGLPESFLKPGLELIGQSKRTE
Sbjct: 313 LLPSPDAPKEDDKMKIDDNEIPSGCLNGFVAFERALGAVGLPESFLKPGLELIGQSKRTE 372

Query: 61  LEDEWKKLHVAELELFLKRTELIRDQTKLILEAYKSSDK 100
           LE+EWKK+H+AELELFLKRTELIRDQ KLILEAYKSS+K
Sbjct: 373 LEEEWKKVHLAELELFLKRTELIRDQAKLILEAYKSSNK 411

The following BLAST results are available for this feature:

BLAST of Spg008916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882180.1	9.1e-44	92.93	probable transcription factor At1g61730 [Benincasa hispida] >XP_038882181.1 prob...	[more]
KAE8647673.1	1.2e-43	90.10	hypothetical protein Csa_002712 [Cucumis sativus]	[more]
XP_008439944.1	3.5e-43	92.93	PREDICTED: mediator-associated protein 1 [Cucumis melo] >KAA0052747.1 mediator-a...	[more]
TYK13076.1	3.5e-43	92.93	cysteine-rich receptor-like protein kinase 26 isoform X1 [Cucumis melo var. maku...	[more]
XP_011658171.1	5.9e-43	91.92	STOREKEEPER protein [Cucumis sativus]	[more]

BLAST of Spg008916 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRP7	1.7e-43	92.93	Cysteine-rich receptor-like protein kinase 26 isoform X1 OS=Cucumis melo var. ma...	[more]
A0A5A7UE20	1.7e-43	92.93	Mediator-associated protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3B0Q1	1.7e-43	92.93	mediator-associated protein 1 OS=Cucumis melo OX=3656 GN=LOC103484580 PE=3 SV=1	[more]
A0A0A0KN49	2.9e-43	91.92	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_6G516640 PE=3 SV=1	[more]
A0A6J1CLC1	1.1e-42	88.89	GLABROUS1 enhancer-binding protein-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Spg008916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008916.1	Spg008916.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016301	kinase activity