Spg008879 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008879
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold10: 31175163 .. 31177786 (+)
RNA-Seq ExpressionSpg008879
SyntenySpg008879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACCAAGCTGCACATAGGTCAGCGCAAGACCAAGGTCATTACTCTTAAATCGGGCTTAAGGAGCTCAACCTATAGCGATAAGTCACCTTGAATCCCAATTCAAGAGTGGGGGCTTAATGTTATAGGTAATTCTGGACCACCATGGTGTACAAGGAGCTGACGAGGACAACCGGGCGGAGATGGGACCAGGAGACGACCCAGAGGAAGACCGGACCAACGGGCCGGGCCAACGTGGCCCGACCCGTACGGTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCAGCTCGGTCCCCCCTGCCTCTGGCCGCCCTAGTTCCGCTTGGCTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGAAGCATGAGCAGGTATTTATACCCCTCTTCGCCGCTGAAGAAGGGGACCCGAACTCTCGACTCTCTCCTCTTACTCTCTTGCTCTCCTCTTCCGTTTTCTGACTTAAGCATCAGAGGCGGTGTGGCTAGCACCACACCAGTGTGTAGGTTTTCTTTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGAAGGTAATTTACCTAGCGAAATTTGATCATCAACAGAATCATAAAATATATGTTTGATAGGAAATTGATGGAGCTTTAGAGAAAAATAATATTAAAGCTACTTTTTGTTGATTTTTGTTTAAATACTTTTTAGACACTTATTCAATAATTGATCTTGTGTATTAATGGAAATATAATTTGTGGGAACTGAAAGATAAAAATCGTAATACTTTGTAAGTGCAGAGTTTAAATTGATGAAACTGAAGGTTTAAGATGAAAATTGGATATATTTGATCAATTTTAGGGGGTAAAACTTGATTTTTTTTCCCTAAATAAATTATATAATGAGATGATATCCAACCAATATGGTAATGTACATATAAATGAAGAATTAGGTGACATATAGATAAAACGGTTGAAAGAAAAGGTGATTTTTTAAAAAAAACAAAGAAAAAGGTGATTGGAAAAACATTTTTATAACATAAATGTGTATAGGAATATAATTGAATTATTACAATAAAATTCTTAAATACTGAACCTTACTACAAAGGTTAATTAAAAAATGCATACATAAAATATAAAAAATAATAATCAAAATATGATCAATAGTTTAGGCCCAATTTGATAATCATTTGATTTTTTGTTTTTGATTTTTAAAAATTAAATTTATAAACATTACTTTTTTTTTTATCAATAAAGTTTATAAACATTACTTCTACTTATAAGTTTTTTTTTTTAACATCTTCTCCCATGTTTTAAAAAACCAAATCAATTTTGTAAACTAAAAAATAGTAGTTTTCAAAAAGAAAAATAAAATTTGGTTATAAATTAAAACGTGTCGTTGACAAATATGAAAACTATGGTAAGGAAATTGAGACAAAACAAGCATAATTTTAAAAAACTAAAAACTAAAAATCAAATAGGATTCAAAGGGGCCTTATATATGAACAAAACTTGGTTGTATACCGGTATGCCCCATTAAAATCTTGACAATTACCAAAGAGGAAGGGAGAAAATGAGAATTTTTTTTTAAATGAGAATTTTTTTTTATCTCTCCTAGTTGTCAAGATTTTAATGGTGGTATGCAGGGAGATCCCTACATACCGGTATGCAGCCAAGTTTTTTCCTATTTATATATAGTTAAGGAAAAAACTTGGCTGCATACCGGTGGGTAGTGGGTAGGGATCTCCCTGCATACCCCATTAAAATCTTGACAACTAAGAAAGAAGAAAGTAAAAAGTGATAACTTTTTTTTGTATCTCTCTTAGTTGTCAAGATTTTAATGGTGGTATGTAGGGAGATTCCTACCCACCGGTATGTAGCCAAGTTTTTTCCTATAGTTAATTGATGTGGAGAAGGATAAAACAACCATGGAATATGGAAAGAGTGTAATAAAATATATAGAATGATCATTTATATAATTTCTTTCGAAATGTAGTCGTTTCTTAATAAAGAATCACGTAGTTGAATATTAATAGAGGGAGTAAATATTATAATATAATATATTGAAATTTTTTCTCGGGGATTGCCTACTGCCGCAATCGAGTGATTGGGAGGAGCGCTGTGTATGGAGTCCGCCTCCTGCTAGGAAGCTGAAACTTAATGTTGATGCTTCTGTCAGGCCTGATACAGGGGAAGCGGGGGATGGTTGTGTGCTGCGTGGGGCTGATGGTGAGGTATTTATGGCCGCCTGTTTGGAACTACAGAGGTGTTGGAGCGTGGATTTGGCTGAGGGATGGACTGTGTATAAAGAGGTCCAACTTGCTCGGCAGTTGGGGTTTGCGGAGTTTGTGGTAGAGACTGACTCGCTGAGGTTGGTCAAAATCCTCCATGGCGATCTGCATGATGTTTCAGAAGTGGGGCTGCTAATGGATGACATTCGAGGGATTCTCCACCCTTGGGACAACGGTAAGGTTTTGTTTACATTACGCCAGGGAAACAAGGTGGCGCATGTTCTGGGTAGTTTGGCCTTTTCATATGTTGACCGTGTTTGGCTTGAAGAGTGGCCCAGCGAAATCTCGGATGTCCTGAGGGGTGATGTTGTTTCAGCTGCGTGA

mRNA sequence

ATGACAACCAAGCTGCACATAGGTCAGCGCAAGACCAAGGTAATTCTGGACCACCATGGTGTACAAGGAGCTGACGAGGACAACCGGGCGGAGATGGGACCAGGAGACGACCCAGAGGAAGACCGGACCAACGGGCCGGGCCAACGTGGCCCGACCCGTACGGTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCAGCTCGGTCCCCCCTGCCTCTGGCCGCCCTAGTTCCGCTTGGCTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGAAGCATGAGCAGGTATTTATACCCCTCTTCGCCGCTGAAGAAGGGGACCCGAACTCTCGACTCTCTCCTCTTACTCTCTTGCTCTCCTCTTCCGTTTTCTGACTTAAGCATCAGAGGCGGTGTGGCTAGCACCACACCAGTGTGTAGGTTTTCTTTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGAAGGCCTGATACAGGGGAAGCGGGGGATGGTTGTGTGCTGCGTGGGGCTGATGGTGAGGTATTTATGGCCGCCTGTTTGGAACTACAGAGGTGTTGGAGCGTGGATTTGGCTGAGGGATGGACTGTGTATAAAGAGGTCCAACTTGCTCGGCAGTTGGGGTTTGCGGAGTTTGTGGTAGAGACTGACTCGCTGAGGTTGGTCAAAATCCTCCATGGCGATCTGCATGATGTTTCAGAAGTGGGGCTGCTAATGGATGACATTCGAGGGATTCTCCACCCTTGGGACAACGGTAAGGTTTTGTTTACATTACGCCAGGGAAACAAGGTGGCGCATGTTCTGGGTAGTTTGGCCTTTTCATATGTTGACCGTGTTTGGCTTGAAGAGTGGCCCAGCGAAATCTCGGATGTCCTGAGGGGTGATGTTGTTTCAGCTGCGTGA

Coding sequence (CDS)

ATGACAACCAAGCTGCACATAGGTCAGCGCAAGACCAAGGTAATTCTGGACCACCATGGTGTACAAGGAGCTGACGAGGACAACCGGGCGGAGATGGGACCAGGAGACGACCCAGAGGAAGACCGGACCAACGGGCCGGGCCAACGTGGCCCGACCCGTACGGTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCAGCTCGGTCCCCCCTGCCTCTGGCCGCCCTAGTTCCGCTTGGCTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGAAGCATGAGCAGGTATTTATACCCCTCTTCGCCGCTGAAGAAGGGGACCCGAACTCTCGACTCTCTCCTCTTACTCTCTTGCTCTCCTCTTCCGTTTTCTGACTTAAGCATCAGAGGCGGTGTGGCTAGCACCACACCAGTGTGTAGGTTTTCTTTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGAAGGCCTGATACAGGGGAAGCGGGGGATGGTTGTGTGCTGCGTGGGGCTGATGGTGAGGTATTTATGGCCGCCTGTTTGGAACTACAGAGGTGTTGGAGCGTGGATTTGGCTGAGGGATGGACTGTGTATAAAGAGGTCCAACTTGCTCGGCAGTTGGGGTTTGCGGAGTTTGTGGTAGAGACTGACTCGCTGAGGTTGGTCAAAATCCTCCATGGCGATCTGCATGATGTTTCAGAAGTGGGGCTGCTAATGGATGACATTCGAGGGATTCTCCACCCTTGGGACAACGGTAAGGTTTTGTTTACATTACGCCAGGGAAACAAGGTGGCGCATGTTCTGGGTAGTTTGGCCTTTTCATATGTTGACCGTGTTTGGCTTGAAGAGTGGCCCAGCGAAATCTCGGATGTCCTGAGGGGTGATGTTGTTTCAGCTGCGTGA

Protein sequence

MTTKLHIGQRKTKVILDHHGVQGADEDNRAEMGPGDDPEEDRTNGPGQRGPTRTVGPLARAESVCLSSVPPASGRPSSAWLVPKRLRIPKNPRSMSRYLYPSSPLKKGTRTLDSLLLLSCSPLPFSDLSIRGGVASTTPVCRFSFFCRPRLPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVDRVWLEEWPSEISDVLRGDVVSAA
Homology
BLAST of Spg008879 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-18
Identity = 64/167 (38.32%), Postives = 88/167 (52.69%), Query Frame = 0

Query: 147 CRPR-----LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVD 206
           CRP       PP +    V+     R ++  AG G ++R + G V++ A   L R   VD
Sbjct: 96  CRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVD 155

Query: 207 LAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPW- 266
             EG+ VY+ + LA + GF  F +ETDSLR+  +L  D  D SEVG+L   I+  L    
Sbjct: 156 WVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHA 215

Query: 267 DNGKVLFTLRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGD 307
           +     FT R GN  AH+L  LA +    ++W+EEWP EIS VL  D
Sbjct: 216 ERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

BLAST of Spg008879 vs. NCBI nr
Match: XP_030970599.1 (uncharacterized protein LOC115990979 [Quercus lobata])

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-14
Identity = 55/159 (34.59%), Postives = 82/159 (51.57%), Query Frame = 0

Query: 152 PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLE-LQRCWSVDLAEGWTVYK 211
           PP +    +++      +   +G G V+R  DG V MA+C E L   +  +  E     K
Sbjct: 71  PPQAGFVKINFDGAVFSNANSSGVGAVIRNHDGAV-MASCAEKLNEAYKAEEIEALAALK 130

Query: 212 EVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLR 271
            +QLA  LGF   ++E DSL L+K L  D H++S +GLL++D++     + +       R
Sbjct: 131 ALQLAFDLGFQNAILEGDSLGLIKALKADDHNLSPLGLLVEDVKLAASNFVSLSYSHIKR 190

Query: 272 QGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGDVV 309
            GN VAH L   A S  D +VW+E+ PS +   L  DVV
Sbjct: 191 NGNSVAHNLAKHAISIPDFQVWMEDVPSHVVSFLHSDVV 228

BLAST of Spg008879 vs. NCBI nr
Match: XP_021716820.1 (uncharacterized protein LOC110684687 [Chenopodium quinoa])

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-13
Identity = 50/143 (34.97%), Postives = 77/143 (53.85%), Query Frame = 0

Query: 169 DTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETD 228
           D    G G V+R A GEV +A CL L+  + VD+AE   +   +++A +  F +  +ETD
Sbjct: 159 DNSAVGLGGVMRDALGEVVVATCLCLRSKYEVDVAEALALRHSLRIALESEFRKVCLETD 218

Query: 229 SLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVD 288
            +++   L       + +G++++DI  +     +    F  R GN  AH L  L+ SY D
Sbjct: 219 CMKVFSHLTKGCAPATILGMVINDIMQLARGCQSCSFSFVKRSGNGAAHALAKLSSSYGD 278

Query: 289 -RVWLEEWPSEISDVLRGDVVSA 311
            RVW+EE PSEIS  +  D+ SA
Sbjct: 279 LRVWMEEVPSEISPFVMADLASA 301

BLAST of Spg008879 vs. NCBI nr
Match: KAF7802400.1 (uncharacterized protein G2W53_041511 [Senna tora])

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-13
Identity = 47/158 (29.75%), Postives = 84/158 (53.16%), Query Frame = 0

Query: 157 KFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLAR 216
           K  VD  V    D G+   GC++R   G    A   E+  C+SV++AE   VY+ + +A+
Sbjct: 614 KLNVDASVR---DGGQTRVGCIIRDYMGRCLAAMTKEITGCYSVEMAEALAVYEGMVVAK 673

Query: 217 QLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGNKVA 276
           ++     +VE DS  ++K+L+G+  D + V  ++ DI  +   + +    +  R+ NKVA
Sbjct: 674 RMSILNVLVEGDSASVIKLLNGEGMDCTYVSFIIKDILQLCSSFRSYSFNWVRREANKVA 733

Query: 277 HVLGSLAFSYVD-----RVWLEEWPSEISDVLRGDVVS 310
           H+L     ++        VWLE++PS I + L+ D+++
Sbjct: 734 HILAHDPVAFPSDNSGILVWLEDYPSLICNALKSDILT 768

BLAST of Spg008879 vs. NCBI nr
Match: TXG72479.1 (hypothetical protein EZV62_001058 [Acer yangbiense])

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-13
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 0

Query: 152 PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKE 211
           PP    F ++     R   G +G GCV+R +DG V  + C     C+   +AE   +   
Sbjct: 57  PPHVGCFKINSDAATRDRDGRSGVGCVIRDSDGYVRASLCQGFDVCYPPQVAETLAILHG 116

Query: 212 VQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQ 271
            +LA +LG    V+E+D+L +V+ +      +SEVG+++ DI  I   +    + F  R 
Sbjct: 117 CRLAAELGLLPTVLESDALSVVEAVRLKSMPLSEVGVVIQDILEIFTSFPVFSICFVPRL 176

Query: 272 GNKVAHVLGSLAFSYVDR-VWLEEWPSEISDVLRGD 307
            NKV H L  LA  +V R VW+ + P  +  ++ GD
Sbjct: 177 ANKVVHGLARLAVGHVGRFVWVNDCPLAVESLVLGD 212

BLAST of Spg008879 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.9e-19
Identity = 64/167 (38.32%), Postives = 88/167 (52.69%), Query Frame = 0

Query: 147 CRPR-----LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVD 206
           CRP       PP +    V+     R ++  AG G ++R + G V++ A   L R   VD
Sbjct: 96  CRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVD 155

Query: 207 LAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPW- 266
             EG+ VY+ + LA + GF  F +ETDSLR+  +L  D  D SEVG+L   I+  L    
Sbjct: 156 WVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHA 215

Query: 267 DNGKVLFTLRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGD 307
           +     FT R GN  AH+L  LA +    ++W+EEWP EIS VL  D
Sbjct: 216 ERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

BLAST of Spg008879 vs. ExPASy TrEMBL
Match: A0A5C7ITL2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001058 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-13
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 0

Query: 152 PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKE 211
           PP    F ++     R   G +G GCV+R +DG V  + C     C+   +AE   +   
Sbjct: 57  PPHVGCFKINSDAATRDRDGRSGVGCVIRDSDGYVRASLCQGFDVCYPPQVAETLAILHG 116

Query: 212 VQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQ 271
            +LA +LG    V+E+D+L +V+ +      +SEVG+++ DI  I   +    + F  R 
Sbjct: 117 CRLAAELGLLPTVLESDALSVVEAVRLKSMPLSEVGVVIQDILEIFTSFPVFSICFVPRL 176

Query: 272 GNKVAHVLGSLAFSYVDR-VWLEEWPSEISDVLRGD 307
            NKV H L  LA  +V R VW+ + P  +  ++ GD
Sbjct: 177 ANKVVHGLARLAVGHVGRFVWVNDCPLAVESLVLGD 212

BLAST of Spg008879 vs. ExPASy TrEMBL
Match: V4UMR3 (RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027161mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 50/156 (32.05%), Postives = 82/156 (52.56%), Query Frame = 0

Query: 147 CRPRLPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGW 206
           C    PP   K  VD  V    D   AG G ++  + GEV  A+   +     ++  E  
Sbjct: 2   CWQSPPPSWYKVNVDAAVSSTED--RAGIGVLVCNSTGEVMAASICTVIFSRDIEFVEAV 61

Query: 207 TVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNG-KV 266
            V+  +QL   +G A  ++E+DS  +V +++  +H   EVG L+ D++ +L   ++  +V
Sbjct: 62  AVHNGLQLVMDIGLAPAIIESDSFNVVNLINNKIHSRCEVGWLISDVQEVLSSSESSFQV 121

Query: 267 LFTLRQGNKVAHVLGSLAF-SYVDRVWLEEWPSEIS 301
            F  R  N+VAH L  LA  + +++VWLEE P+EI+
Sbjct: 122 KFAPRSCNEVAHHLSKLALCNSMEKVWLEEVPTEIA 155

BLAST of Spg008879 vs. ExPASy TrEMBL
Match: A0A2N9HF86 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38265 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 60/203 (29.56%), Postives = 91/203 (44.83%), Query Frame = 0

Query: 105 LKKGTRTLDSLLLLSCSPLPFSDLSIRGGVASTTPVCRFSFFCRPRLPPLSNKFTVDYHV 164
           L++  RTL   L    SP P S         +T P  R  +      PP   ++ V+Y  
Sbjct: 43  LQRAQRTLGEFLEAQESPNPPS--------RTTEPQIRTKW-----KPPQLGRYKVNYDG 102

Query: 165 ERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFV 224
               ++ EAG G ++R   GEV  + C  +    S++  E +      QLA  LGF E  
Sbjct: 103 AMFEESSEAGIGVIIRNNRGEVMASMCHRIHYPHSIEAMEAYAARSATQLAIDLGFKEVD 162

Query: 225 VETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLA- 284
           +E DS+ +V  L       +  G L++D +   + + + + L   R GN VAH+L   A 
Sbjct: 163 IEGDSITIVTALRNTAPCCTLYGHLVNDTKNTANSFLSVQFLHVKRDGNSVAHLLAKRAK 222

Query: 285 FSYVDRVWLEEWPSEISDVLRGD 307
           FS    VW+E  P +I  +L  D
Sbjct: 223 FSNPFEVWMESVPPDIVPILCND 232

BLAST of Spg008879 vs. ExPASy TrEMBL
Match: A0A2I4H8L7 (uncharacterized protein LOC109014467 OS=Juglans regia OX=51240 GN=LOC109014467 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-12
Identity = 50/157 (31.85%), Postives = 75/157 (47.77%), Query Frame = 0

Query: 151 LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYK 210
           LPP  N F  ++         + G   ++R   GEV  A C          +AEG  + K
Sbjct: 15  LPPGENSFKANWDAACDIKHRQMGIEVIIRDEKGEVIAAYCGARGNVDQPVIAEGLALIK 74

Query: 211 EVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLR 270
            ++L   LG  +   E DS  +VK ++    D+S  G +++D + I   W N  + +T R
Sbjct: 75  AMELCNDLGLNKVTFEGDSHNIVKHVYNLDEDLSCYGNIIEDSKSIFFTWSNWTIQYTHR 134

Query: 271 QGNKVAHVLGSLAF-SYVDRVWLEEWPSEISDVLRGD 307
             N VAH L   A  S V++VW+EE P+ IS  L+ D
Sbjct: 135 NANTVAHNLAKAAIQSNVEKVWIEEAPTFISSYLQKD 171

BLAST of Spg008879 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 9.4e-05
Identity = 35/117 (29.91%), Postives = 55/117 (47.01%), Query Frame = 0

Query: 174 GDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLV 233
           G G +LR   G V       L R  +V  AE   +   V    +  +   + E+D+  LV
Sbjct: 161 GIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALV 220

Query: 234 KILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGNKVAHVLG--SLAFSYVD 289
            +L+ D      +   ++DI+ +LH ++  K  FT R GNKVA  +   S++FS  D
Sbjct: 221 NLLNSD-DFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESISFSNYD 276

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150944.11.8e-1838.32uncharacterized protein LOC111018973 [Momordica charantia][more]
XP_030970599.12.7e-1434.59uncharacterized protein LOC115990979 [Quercus lobata][more]
XP_021716820.12.3e-1334.97uncharacterized protein LOC110684687 [Chenopodium quinoa][more]
KAF7802400.13.0e-1329.75uncharacterized protein G2W53_041511 [Senna tora][more]
TXG72479.13.0e-1331.41hypothetical protein EZV62_001058 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DBJ78.9e-1938.32uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5C7ITL21.5e-1331.41RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001058 ... [more]
V4UMR31.6e-1232.05RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CI... [more]
A0A2N9HF861.6e-1229.56RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38265 ... [more]
A0A2I4H8L72.1e-1231.85uncharacterized protein LOC109014467 OS=Juglans regia OX=51240 GN=LOC109014467 P... [more]
Match NameE-valueIdentityDescription
AT2G34320.19.4e-0529.91Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 169..280
e-value: 6.8E-17
score: 61.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..46
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 168..297
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 167..279
e-value: 4.98009E-12
score: 60.0204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008879.1Spg008879.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity