Spg008877 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008877
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	scaffold10: 37206437 .. 37206733 (+)
RNA-Seq Expression	Spg008877
Synteny	Spg008877

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTACCAACCCAGACCTGCACTCGCCACGGCGCCGGACCCACCACCACCGCCGCCGCGCTTCTTCTTTTCTTGTGGGTCGTTATCATTTCAGCTCCGCCCAGTCTCTGTCTCCATCTCCCACCACCGCCGTCGAGGAAATTAGTCCGTTTCTCCACCGCGTCGTTTCCGCATGCACAGCCTGCAGCTACCCCAGCTGAGCTCCTCGGCCGTCGTACCTCAGCCGCCGGCGCCTCCGTTTACGGCGACGACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

mRNA sequence

ATGAGAGTACCAACCCAGACCTGCACTCGCCACGGCGCCGGACCCACCACCACCGCCGCCGCGCTTCTTCTTTTCTTGTGGGTCGTTATCATTTCAGCTCCGCCCAGTCTCTGTCTCCATCTCCCACCACCGCCGTCGAGGAAATTAGTCCGTTTCTCCACCGCGTCGTTTCCGCATGCACAGCCTGCAGCTACCCCAGCTGAGCTCCTCGGCCGTCGTACCTCAGCCGCCGGCGCCTCCGTTTACGGCGACGACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGAGAGTACCAACCCAGACCTGCACTCGCCACGGCGCCGGACCCACCACCACCGCCGCCGCGCTTCTTCTTTTCTTGTGGGTCGTTATCATTTCAGCTCCGCCCAGTCTCTGTCTCCATCTCCCACCACCGCCGTCGAGGAAATTAGTCCGTTTCTCCACCGCGTCGTTTCCGCATGCACAGCCTGCAGCTACCCCAGCTGAGCTCCTCGGCCGTCGTACCTCAGCCGCCGGCGCCTCCGTTTACGGCGACGACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MRVPTQTCTRHGAGPTTTAAALLLFLWVVIISAPPSLCLHLPPPPSRKLVRFSTASFPHAQPAATPAELLGRRTSAAGASVYGDDKRLIHTGPNPLHN

Homology

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BLAST of Spg008877 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1  MRVPTQTCTRHGAGPTTTAAALLLFLWVVIISAP--PSLCLHLPPPPSRKLVRFSTASFP 60
          MRV T TC+RHGAG TTT  AL+LFLWV++I AP   +LC  LPP P RKLVRFSTASF 
Sbjct: 1  MRVRTVTCSRHGAGATTT-TALVLFLWVLLILAPATTTLCFQLPPSP-RKLVRFSTASFR 60

Query: 61 HAQPAATPAELLGRRTSAAG-ASVYGDDKRLIHTGPNPLHN 99
          HA PA +PAELL RR S+AG A+ YGD+KRLIHTGPNPLHN
Sbjct: 61 HAPPATSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

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BLAST of Spg008877 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 8.6e-23
Identity = 65/102 (63.73%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1  MRVPTQTCTRHGAGPTTTAAALLLFLWVVIISAPPSLCLHL--PPPPSRKLVRFSTASFP 60
          M   T T +RH   PTT   AL LF WV++ISAP +LCLHL  PPPPSRKL RFSTA F 
Sbjct: 1  MTPSTGTSSRHRVRPTT---ALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFH 60

Query: 61 HAQPAAT--PAELLGRRTSAAGASVYGDDKRLIHTGPNPLHN 99
          HA P  T  PAEL  R  SAA A+ YG++KRLIHTGPNPLHN
Sbjct: 61 HAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

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BLAST of Spg008877 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 4.3e-22
Identity = 67/102 (65.69%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1  MRVPTQTCTRHGAGPTTTAAALLLFLWVVIISAPPSLCLHL--PPPPSRKLVRFSTASFP 60
          M   T T +RH A PTT   ALLLF WV++I AP +LCLHL  PPPPSRKL RFSTASF 
Sbjct: 1  MTPQTGTSSRHRARPTT---ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFR 60

Query: 61 HAQPAAT--PAELLGRRTSAAGASVYGDDKRLIHTGPNPLHN 99
          HA P  T  PAELL RR     AS Y +DKRLIHTGPNPLHN
Sbjct: 61 HAPPTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

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BLAST of Spg008877 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 8.1e-21
Identity = 64/95 (67.37%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 7  TCTRHGAGPTTTAAALLLFLWVVIISAPPSLCLHLPPPP--SRKLVRFSTASFPHAQPAA 66
          T T H A   TTA A LLF WV++I  PP+LCLHLPPPP  SRKLV FSTAS  H   A 
Sbjct: 2  TLTTH-ASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSH---AT 61

Query: 67 TPAELLGRR-TSAAGASVYGDDKRLIHTGPNPLHN 99
          +P ELL  R TSAA A+VY DDKRLIHTGPNPLHN
Sbjct: 62 SPPELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 92

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BLAST of Spg008877 vs. NCBI nr
Match: KAG6579251.1 (hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1   MRVPTQTCTRHGAGPTTTAAALLLFLWVVIISAP--PSLCLHLPPPPSRKLVRFSTASFP 60
           MRV T TC+RHGAG TTT  AL+LFLWV++I AP   +LC  LPP P RKLVRFSTASF 
Sbjct: 29  MRVRTVTCSRHGAGATTT-TALVLFLWVLLILAPATTTLCFQLPPSP-RKLVRFSTASFR 88

Query: 61  HAQPAATPAELLGRRTSAAG-ASVYGDDKRLIHT 92
           HA  A +PAELL RR S+AG A+ YGD+KRLIHT
Sbjct: 89  HAPSATSPAELLHRRQSSAGAAAAYGDEKRLIHT 120

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BLAST of Spg008877 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-07
Identity = 30/64 (46.88%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 39 LHL----PPPPSRKLVRFSTASFPHAQPAATPAELLGRRTSAAGASVYGDDKRLIHTGPN 98
          LHL    PPPP RK +R+STA F               R   +   +YGDDKR++HTGPN
Sbjct: 51 LHLVASPPPPPPRKALRYSTAPF---------------RGPLSRDDIYGDDKRVVHTGPN 99

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BLAST of Spg008877 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23
Identity = 65/102 (63.73%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1  MRVPTQTCTRHGAGPTTTAAALLLFLWVVIISAPPSLCLHL--PPPPSRKLVRFSTASFP 60
          M   T T +RH   PTT   AL LF WV++ISAP +LCLHL  PPPPSRKL RFSTA F 
Sbjct: 1  MTPSTGTSSRHRVRPTT---ALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFH 60

Query: 61 HAQPAAT--PAELLGRRTSAAGASVYGDDKRLIHTGPNPLHN 99
          HA P  T  PAEL  R  SAA A+ YG++KRLIHTGPNPLHN
Sbjct: 61 HAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Spg008877 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 67/102 (65.69%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1  MRVPTQTCTRHGAGPTTTAAALLLFLWVVIISAPPSLCLHL--PPPPSRKLVRFSTASFP 60
          M   T T +RH A PTT   ALLLF WV++I AP +LCLHL  PPPPSRKL RFSTASF 
Sbjct: 1  MTPQTGTSSRHRARPTT---ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFR 60

Query: 61 HAQPAAT--PAELLGRRTSAAGASVYGDDKRLIHTGPNPLHN 99
          HA P  T  PAELL RR     AS Y +DKRLIHTGPNPLHN
Sbjct: 61 HAPPTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Spg008877 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 67/102 (65.69%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 1  MRVPTQTCTRHGAGPTTTAAALLLFLWVVIISAPPSLCLHL--PPPPSRKLVRFSTASFP 60
          M   T T +RH A PTT   ALLLF WV++I AP +LCLHL  PPPPSRKL RFSTASF 
Sbjct: 1  MTPQTGTSSRHRARPTT---ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFR 60

Query: 61 HAQPAAT--PAELLGRRTSAAGASVYGDDKRLIHTGPNPLHN 99
          HA P  T  PAELL RR     AS Y +DKRLIHTGPNPLHN
Sbjct: 61 HAPPTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Spg008877 vs. ExPASy TrEMBL
Match: A0A7N2KKB6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 44/117 (37.61%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 1   MRVPTQTC-----TRHGAGPTTTAAALLLFLWVVIISAPPSLCL-------HLPPPPSRK 60
           M VP++ C     TRH   PT T ++ +L LWV++I    S CL            P RK
Sbjct: 1   MIVPSEACARARGTRHVRAPTPTTSSTILLLWVILIFTQISFCLAAHEESGKFNRSPPRK 60

Query: 61  LVRFSTASFPHA-------QPAATPAELLGRRTSAAGASVYGDDKRLIHTGPNPLHN 99
             RFS     HA         + TP +      +    +VYGD+KR+IHTGPNPLHN
Sbjct: 61  -DRFSQTPLFHAPSTSSSSSSSTTPGQAGAATINGDSDTVYGDEKRIIHTGPNPLHN 116

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BLAST of Spg008877 vs. ExPASy TrEMBL
Match: A0A2I0JLZ3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_022328 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05
Identity = 37/85 (43.53%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 23 LLFLWVVIISAPPSLCL-------HLP--PPPSRKLVRFSTASFPHAQPAATPAELLGRR 82
          ++ LWVV+IS+  S  L       H P  PP SRK   FST S  H   ++ P  L G  
Sbjct: 14 MMLLWVVVISSEVSFLLADHERDDHAPLYPPSSRKSRFFSTVSVVHMPTSSPP--LAGPS 73

Query: 83 TSAAGASVYGDDKRLIHTGPNPLHN 99
                 +Y +DKR+IHTGPNPLHN
Sbjct: 74 VDPDPNKLYEEDKRIIHTGPNPLHN 96

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BLAST of Spg008877 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08
Identity = 30/64 (46.88%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 39 LHL----PPPPSRKLVRFSTASFPHAQPAATPAELLGRRTSAAGASVYGDDKRLIHTGPN 98
          LHL    PPPP RK +R+STA F               R   +   +YGDDKR++HTGPN
Sbjct: 51 LHLVASPPPPPPRKALRYSTAPF---------------RGPLSRDDIYGDDKRVVHTGPN 99

[Close]

BLAST of Spg008877 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08
Identity = 30/64 (46.88%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 39 LHL----PPPPSRKLVRFSTASFPHAQPAATPAELLGRRTSAAGASVYGDDKRLIHTGPN 98
          LHL    PPPP RK +R+STA F               R   +   +YGDDKR++HTGPN
Sbjct: 51 LHLVASPPPPPPRKALRYSTAPF---------------RGPLSRDDIYGDDKRVVHTGPN 99

[Close]

BLAST of Spg008877 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 27/59 (45.76%), Postives = 30/59 (50.85%), Query Frame = 0


Query: 40  HLPPPPSRKLVRFSTASFPHAQPAATPAELLGRRTSAAGASVYGDDKRLIHTGPNPLHN 99
           H P  P +       ASF    P AT +    RR       VY DDKRL+HTGPNPLHN
Sbjct: 47  HYPSLPRKAGHFHEMASF--QAPKATVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

The following BLAST results are available for this feature:

BLAST of Spg008877 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016766.1	1.7e-26	71.29	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011656246.1	8.6e-23	63.73	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]
XP_008437694.1	4.3e-22	65.69	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
KAG6601877.1	8.1e-21	67.37	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6579251.1	1.8e-20	68.09	hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg008877 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	3.1e-07	46.88	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of Spg008877 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSY2	4.2e-23	63.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A5A7TY55	2.1e-22	65.69	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	2.1e-22	65.69	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A7N2KKB6	2.5e-07	37.61	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2I0JLZ3	3.0e-05	43.53	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_022328 PE=4 SV=1	[more]

BLAST of Spg008877 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	2.2e-08	46.88	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	2.2e-08	46.88	CLAVATA3/ESR-RELATED 17	[more]
AT2G01505.1	1.1e-04	45.76	CLAVATA3/ESR-RELATED 16	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 16..98
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 16..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008877.1	Spg008877.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010078	maintenance of root meristem identity
biological_process	GO:0010088	phloem development
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0048731	system development
cellular_component	GO:0005576	extracellular region