Spg008864 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008864
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 34019643 .. 34020659 (+)
RNA-Seq Expression	Spg008864
Synteny	Spg008864

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGCTCGTGGCACTGCACTACACAGTGAACAGCCACAAAGTGGTGTACGCGACGAGAGGCTGCGCGAGAGTGCAAGTCGTGGACAACTACGGGCAGTCGGTGTTCGACGACAAGCTTCGGGAAGGACAGGTACTGACGATTCCACAGAACTTCTTGGTGATAAAACGGGCGAGCGACAGAGGATTCGAGTGGGCTTCCTTCCCCATCTCTTTCATCTTCCACTCCGGTGGCCGGCCACCGCCGACAGCCGGCGAACGGCGGCGGTGGTCGGCGGAATTTTTTTTTTTTTTTTGTTCTTTCTTCCTCTTCCCTTCTTCTCTTCTTCACCTTTCTTTTCTTTCTTCTGTTTTTTTTTTAAACAGAGAGATTTGGGGAGGAGGAGCTCCTCCTCCCCTTCTCGTTTCAGATCTGAATCGGACAATGGCTGAGAAGAAACCATCTGCACACGCTAATTTCTTCAAAACCCTAACAATGCTGATTTCTTCAAATCTCCAATTAAAAAAAAACCCTAACAACGATTCGATTTCTTCAAATCTCCAATTCCAAAAAACCGCAACAACGCTACAATCTTCTGAATCTCGAATTTCAACACAAAGCCTAATATCTTCAAATTTGCACCTGCAGAACGCACTCGTGGCACTGCACTACACAGTGAACAACCACAAAGTGGTGTACGCGACGAGAGGCAGCGCGAGAGTGCAAGTCGTGGACAACTACGGGTAGTCGGTGTTCGACGGCAAGCTCCGGGAAGGACAGATACTGACGATTCCACAGAACTTCTTGGTGATAAAACGGGCGAGCGACAGAGGATTCGAGTGGGCCGCATTCAAGACGAACGACAACGCGGTGACGAACCTGCTGGCCGGGCGAGCTTCGCAGATGAGGCTGTTGCCGTTGGGAGTTTTGTCGAGCTCGTACCGGATCTCGAGGGAGGAGGCGCAGAGGGTCAAGTACGGGCAGCAAGAGATGAGGGTGCTGAGCCCCGAAAGGTCGTAGGGAAGAAGAGACTCAGATGA

mRNA sequence

CGCGCTCGTGGCACTGCACTACACAGTGAACAGCCACAAAGTGGTGTACGCGACGAGAGGCTGCGCGAGAGTGCAAGTCGTGGACAACTACGGGCAGTCGGTGTTCGACGACAAGCTTCGGGAAGGACAGAACGCACTCGTGGCACTGCACTACACAGTGAACAACCACAAAGTGGTGTACGCGACGAGAGGCAGCGCGAGAGTGCAAGTCGTGGACAACTACGGGTAGTCGGTGTTCGACGGCAAGCTCCGGGAAGGACAGATACTGACGATTCCACAGAACTTCTTGGTGATAAAACGGGCGAGCGACAGAGGATTCGAGTGGGCCGCATTCAAGACGAACGACAACGCGGTGACGAACCTGCTGGCCGGGCGAGCTTCGCAGATGAGGCTGTTGCCGTTGGGAGTTTTGTCGAGCTCGTACCGGATCTCGAGGGAGGAGGCGCAGAGGGTCAAGTACGGGCAGCAAGAGATGAGGGTGCTGAGCCCCGAAAGGTCGTAGGGAAGAAGAGACTCAGATGA

Coding sequence (CDS)

CGCGCTCGTGGCACTGCACTACACAGTGAACAGCCACAAAGTGGTGTACGCGACGAGAGGCTGCGCGAGAGTGCAAGTCGTGGACAACTACGGGCAGTCGGTGTTCGACGACAAGCTTCGGGAAGGACAGAACGCACTCGTGGCACTGCACTACACAGTGAACAACCACAAAGTGGTGTACGCGACGAGAGGCAGCGCGAGAGTGCAAGTCGTGGACAACTACGGGTAGTCGGTGTTCGACGGCAAGCTCCGGGAAGGACAGATACTGACGATTCCACAGAACTTCTTGGTGATAAAACGGGCGAGCGACAGAGGATTCGAGTGGGCCGCATTCAAGACGAACGACAACGCGGTGACGAACCTGCTGGCCGGGCGAGCTTCGCAGATGAGGCTGTTGCCGTTGGGAGTTTTGTCGAGCTCGTACCGGATCTCGAGGGAGGAGGCGCAGAGGGTCAAGTACGGGCAGCAAGAGATGAGGGTGCTGAGCCCCGAAAGGTCGTAGGGAAGAAGAGACTCAGATGA

Protein sequence

RARGTALHSEQPQSGVRDERLRESASRGQLRAVGVRRQASGRTERTRGTALHSEQPQSGVRDERQRESASRGQLRVVGVRRQAPGRTDTDDSTELLGDKTGERQRIRVGRIQDERQRGDEPAGRASFADEAVAVGSFVELVPDLEGGGAEGQVRAARDEGAEPRKVVGKKRLR

Homology

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BLAST of Spg008864 vs. NCBI nr
Match: KAE8646519.1 (hypothetical protein Csa_016426 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.7e-27
Identity = 83/154 (53.90%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 20  RLRESASRGQLRAVGVRRQASGRTERTRGTALHSEQPQSGVRDERQRESASRGQLRVVGV 79
           ++R SA RG L +V          +R  GTALHSE+P SGVR ERQRESAS GQLR   V
Sbjct: 336 QVRLSAERGVLYSV----------KRDLGTALHSERPHSGVRYERQRESASGGQLRSGSV 395

Query: 80  RRQAPGRTDTDDSTELLGDKTGERQRIRVGRIQDERQRGDEPAGRASFADEAVAVGSFVE 139
           RR+ PGRT T DSTEL GD   +R+RIR+  IQD+RQR  E AG  SF DE  ++GS VE
Sbjct: 396 RRRGPGRTSTGDSTELRGDDKSKRERIRMDSIQDKRQRNHELAGGKSFTDEVASIGSSVE 455

Query: 140 LVPDLEGGGAEGQVRAARDEGAEPRKVVGKKRLR 174
            V D +G G   +VR   DE  + RKV GKKR++
Sbjct: 456 HVQDFKGRGTAAEVRTTGDEDFQSRKVAGKKRVK 479

The following BLAST results are available for this feature:

BLAST of Spg008864 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646519.1	2.7e-27	53.90	hypothetical protein Csa_016426 [Cucumis sativus]	[more]

BLAST of Spg008864 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008864 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008864 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008864.1	Spg008864.1	mRNA