Spg008827 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008827
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein TIC 40, chloroplastic isoform X2
Location	scaffold10: 33080777 .. 33082647 (+)
RNA-Seq Expression	Spg008827
Synteny	Spg008827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGGCTCAATTTAGCCCTAACATCTCCTCCCAAGTTTGTTTTCCTCCGATATTCTTCTTCTTCTTCTATCTCCACTGCCACTAGAACCAATCAGTTATGCGGAAGCAGGCGCTTGGCAAGGTCCCGGATTAAATCTCCTCCCAGAATTTGTGCTTCTGCCGTCAATCGTCGACCCAACCACCGTATCCTCGGTAATACTCCAATTCGTTGTTCAAAATCACGTTTCCACGTAGCTTGTAATCTTTTGGTGATTTTATTGTTCTCTGCCTTGTTTGCTGTTGTGAAAAGCAGTGGCCGAACGGTTTGCGAGCGTTTCTTCTTCGACTACCAGCAATGAATCGTCTTCTGTTGGTGTTCCATCCATTTCAGTTCCTCCTCCCTCCTCTTATGTGTAAATTTTCATTCCCCTGTCTTTCATTTCTGTCTATAGATTTCTGCAATTCAGTTCTACATTTATTTTCCTTGATATGACATGAATTAAGTTCGGTAACTTAGATGCCCCTTCCGGCTTTGTTCTGTTATGTTTTCTTTATTAGTTTATGGATCTTTGATATTCTGATTGTCAACTTTTTAGAGGGTCGCCTCTCTTTTGGGTTGGTGTTGGTGTTGGGCTTTCAGCATTATTTACATGGGTGAGTATCGAACCTATATGTCTAAACCACATATTTTCCTAATGTCGTAACTTTTAGGCCGAATGTTGTTTTGACAAGTTCTAAAAAATTACAGGTGGCTTCTTACTTAAAGGTGAGTTTTCTTCTACAAGGTATGGTAATATGATTGTGTCTTATAAACTGTCCTTTGGGTGCTGTTGTTCCTGCTAGAGTCGGTCCTCCATAGCTCTCTCTTAGCTTGCACAGACATTCCTCTGAAAATGTCTATTCTTTCTGGTTGGAGTTCTACATAATACCAGTTTATTATCTGTGGGGTTGTCGACCTTTGAAAAGTTGTATTATTTATGTGAAAACTTTCTGCACTTTTGTTGTCGGAAAAAGGCGTTCTTTGTTGCTCCTCTTATTTTTTATTACCCATAACTTTGATTTTATTTTTTCAATTTGTTTTTGCATGAAAAATGTATTTTCACATCCAGATTATGCTAGCTTTGGTTTATTTTGTAATTTTTTTATTAGTTCGAATTTAGGAATGAAGAGACTCTATTAAAAAAGTTGTGTATGTACTACTGTTACGTTGGAGTGCTGAGCAACGAGTGACTGCTTGTGTACCAAAAGACAAGTATGAGCATTATTGATCATATATTTGTTTACATTTATAATGCAGGACTGCAATTGAGAGTCACAGGCTTTGCGTTTCCTGTATCTTGTGCTTATTTATTTATTTATTTTTATTGAATGTTTAGGATTCTTTTAGATTAATTTGAGTTCTACTTGTATAACAAGTCCCTGATGTCTTGAAATTCTTATTTTAATTAGAGATTCTAATTCTAGTGGATTTCAGGACCTAGTTTAACTCTAGTAGACATCTTAGTTGTATGCTTATTTTATCGTTAAACGCTGCTGATTTAATTTTATATTTTTTTCCAGCAAGCACTATAAAATAGTTCAATAAATTTTTATTTAGTTCCCAAGTAAATATTTTATGTGTTGGGCTTGTGGATTAAGGTAATAAACTTTAGGCAGATATTCTTATCAGATTTTGTCAATTCTACAGGGTTCTTCTGTTTTCCTTCTTACCTATCACGCTGCTTTTCTGATTGCAATAGCCACATTGAATTCTTGTGAAGCTCTCAAGTTTAAATCTAAAATAATCCCGAGGATCACCGGGATCATTACCCCTTCATTCTTGGATTTTGGGATGCCAAATAAGCTCCGAGTTAGAAAGGAAAATCTTCAAAAGGAATCGGAAAATTAG

mRNA sequence

ATGGACAGGCTCAATTTAGCCCTAACATCTCCTCCCAAGTTTGTTTTCCTCCGATATTCTTCTTCTTCTTCTATCTCCACTGCCACTAGAACCAATCAGTTATGCGGAAGCAGGCGCTTGGCAAGGTCCCGGATTAAATCTCCTCCCAGAATTTGTGCTTCTGCCGTCAATCGTCGACCCAACCACCGTATCCTCGGTAATACTCCAATTCGTTTGGCCGAACGGTTTGCGAGCGTTTCTTCTTCGACTACCAGCAATGAATCGTCTTCTGTTGGTGTTCCATCCATTTCAGTTCCTCCTCCCTCCTCTTATGTAGGGTCGCCTCTCTTTTGGGTTGGTGTTGGTGTTGGGCTTTCAGCATTATTTACATGGGGTTCTTCTGTTTTCCTTCTTACCTATCACGCTGCTTTTCTGATTGCAATAGCCACATTGAATTCTTGTGAAGCTCTCAAGTTTAAATCTAAAATAATCCCGAGGATCACCGGGATCATTACCCCTTCATTCTTGGATTTTGGGATGCCAAATAAGCTCCGAGTTAGAAAGGAAAATCTTCAAAAGGAATCGGAAAATTAG

Coding sequence (CDS)

ATGGACAGGCTCAATTTAGCCCTAACATCTCCTCCCAAGTTTGTTTTCCTCCGATATTCTTCTTCTTCTTCTATCTCCACTGCCACTAGAACCAATCAGTTATGCGGAAGCAGGCGCTTGGCAAGGTCCCGGATTAAATCTCCTCCCAGAATTTGTGCTTCTGCCGTCAATCGTCGACCCAACCACCGTATCCTCGGTAATACTCCAATTCGTTTGGCCGAACGGTTTGCGAGCGTTTCTTCTTCGACTACCAGCAATGAATCGTCTTCTGTTGGTGTTCCATCCATTTCAGTTCCTCCTCCCTCCTCTTATGTAGGGTCGCCTCTCTTTTGGGTTGGTGTTGGTGTTGGGCTTTCAGCATTATTTACATGGGGTTCTTCTGTTTTCCTTCTTACCTATCACGCTGCTTTTCTGATTGCAATAGCCACATTGAATTCTTGTGAAGCTCTCAAGTTTAAATCTAAAATAATCCCGAGGATCACCGGGATCATTACCCCTTCATTCTTGGATTTTGGGATGCCAAATAAGCTCCGAGTTAGAAAGGAAAATCTTCAAAAGGAATCGGAAAATTAG

Protein sequence

MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTYHAAFLIAIATLNSCEALKFKSKIIPRITGIITPSFLDFGMPNKLRVRKENLQKESEN

Homology

[Close]

BLAST of Spg008827 vs. NCBI nr
Match: XP_022141408.1 (protein TIC 40, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-47
Identity = 116/151 (76.82%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVN 60
           MDRLNLALTSPPKFV L YSS+S+ISTATRTNQLCGSRRLARSRIKSP   PRICASAVN
Sbjct: 1   MDRLNLALTSPPKFVLLGYSSTSTISTATRTNQLCGSRRLARSRIKSPPPFPRICASAVN 60

Query: 61  RRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVG 120
           RRPNHRI+      +AERFASVSSSTTSN+SSSVGVPS+SVPPPSSYVGSPLFWVGVGVG
Sbjct: 61  RRPNHRIV------VAERFASVSSSTTSNQSSSVGVPSVSVPPPSSYVGSPLFWVGVGVG 120

Query: 121 LSALFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LSALF+W +S +L  Y    AF   ++ +NS
Sbjct: 121 LSALFSWVAS-YLKKYAMQQAFKTMMSQMNS 144

[Close]

BLAST of Spg008827 vs. NCBI nr
Match: XP_022141409.1 (protein TIC 40, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-47
Identity = 116/151 (76.82%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVN 60
           MDRLNLALTSPPKFV L YSS+S+ISTATRTNQLCGSRRLARSRIKSP   PRICASAVN
Sbjct: 1   MDRLNLALTSPPKFVLLGYSSTSTISTATRTNQLCGSRRLARSRIKSPPPFPRICASAVN 60

Query: 61  RRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVG 120
           RRPNHRI+      +AERFASVSSSTTSN+SSSVGVPS+SVPPPSSYVGSPLFWVGVGVG
Sbjct: 61  RRPNHRIV------VAERFASVSSSTTSNQSSSVGVPSVSVPPPSSYVGSPLFWVGVGVG 120

Query: 121 LSALFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LSALF+W +S +L  Y    AF   ++ +NS
Sbjct: 121 LSALFSWVAS-YLKKYAMQQAFKTMMSQMNS 144

[Close]

BLAST of Spg008827 vs. NCBI nr
Match: KAG6579066.1 (Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 115/148 (77.70%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRP 60
           MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR 
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVGLSA 120
           NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPPPSSYVGSPLFWVGVGVGLSA
Sbjct: 61  NHRIV------VAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSA 120

Query: 121 LFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LFTW +S +L  Y    AF   ++ +NS
Sbjct: 121 LFTWVAS-YLKKYAMQQAFKTMMSQMNS 141

[Close]

BLAST of Spg008827 vs. NCBI nr
Match: KAG7016592.1 (Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 115/148 (77.70%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRP 60
           MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR 
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVGLSA 120
           NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPPPSSYVGSPLFWVGVGVGLSA
Sbjct: 61  NHRIV------VAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSA 120

Query: 121 LFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LFTW +S +L  Y    AF   ++ +NS
Sbjct: 121 LFTWVAS-YLKKYAMQQAFKTMMSQMNS 141

[Close]

BLAST of Spg008827 vs. NCBI nr
Match: XP_022992989.1 (protein TIC 40, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 115/148 (77.70%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRP 60
           MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR 
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVGLSA 120
           NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPPPSSYVGSPLFWVGVGVGLSA
Sbjct: 61  NHRIV------VAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSA 120

Query: 121 LFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LFTW +S +L  Y    AF   ++ +NS
Sbjct: 121 LFTWVAS-YLKKYAMQQAFKTMMSQMNS 141

[Close]

BLAST of Spg008827 vs. ExPASy Swiss-Prot
Match: Q8GT66 (Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-10
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRP 60
           M+ LNLAL S PK + L +SSS ++ +  R +   G+ R++ +   S     AS      
Sbjct: 1   MENLNLALVSSPKPLLLGHSSSKNVFSG-RKSFTFGTFRVSANSSSSHVTRAAS-----K 60

Query: 61  NHRILGNTPIRL-AERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVGLS 120
           +H+ L +   ++ A  FAS+SSS    E++SVGV     PPP S VGSPLFW+G+GVG S
Sbjct: 61  SHQNLKSVQGKVNAHDFASISSS-NGQETTSVGVSPQLSPPPPSTVGSPLFWIGIGVGFS 117

Query: 121 ALFT 124
           ALF+
Sbjct: 121 ALFS 117

[Close]

BLAST of Spg008827 vs. ExPASy Swiss-Prot
Match: Q9FMD5 (Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-09
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 50  RICASAVNRRPNHRILGNTPI----RLAERFASVSSSTTSNESSSVGVPSISVPPP-SSY 109
           +I ASA ++ P+ R      I    + ++ FAS+ SS+   +++SV  PS+ VPPP SS 
Sbjct: 45  KISASAQSQSPSSRPENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSST 104

Query: 110 VGSPLFWVGVGVGLSALFTWGSS 128
           +GSPLFW+GVGVGLSALF++ +S
Sbjct: 105 IGSPLFWIGVGVGLSALFSYVTS 127

[Close]

BLAST of Spg008827 vs. ExPASy TrEMBL
Match: A0A6J1CIJ9 (protein TIC 40, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011818 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.6e-47
Identity = 116/151 (76.82%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVN 60
           MDRLNLALTSPPKFV L YSS+S+ISTATRTNQLCGSRRLARSRIKSP   PRICASAVN
Sbjct: 1   MDRLNLALTSPPKFVLLGYSSTSTISTATRTNQLCGSRRLARSRIKSPPPFPRICASAVN 60

Query: 61  RRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVG 120
           RRPNHRI+      +AERFASVSSSTTSN+SSSVGVPS+SVPPPSSYVGSPLFWVGVGVG
Sbjct: 61  RRPNHRIV------VAERFASVSSSTTSNQSSSVGVPSVSVPPPSSYVGSPLFWVGVGVG 120

Query: 121 LSALFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LSALF+W +S +L  Y    AF   ++ +NS
Sbjct: 121 LSALFSWVAS-YLKKYAMQQAFKTMMSQMNS 144

[Close]

BLAST of Spg008827 vs. ExPASy TrEMBL
Match: A0A6J1CKF2 (protein TIC 40, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011818 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.6e-47
Identity = 116/151 (76.82%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVN 60
           MDRLNLALTSPPKFV L YSS+S+ISTATRTNQLCGSRRLARSRIKSP   PRICASAVN
Sbjct: 1   MDRLNLALTSPPKFVLLGYSSTSTISTATRTNQLCGSRRLARSRIKSPPPFPRICASAVN 60

Query: 61  RRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVG 120
           RRPNHRI+      +AERFASVSSSTTSN+SSSVGVPS+SVPPPSSYVGSPLFWVGVGVG
Sbjct: 61  RRPNHRIV------VAERFASVSSSTTSNQSSSVGVPSVSVPPPSSYVGSPLFWVGVGVG 120

Query: 121 LSALFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LSALF+W +S +L  Y    AF   ++ +NS
Sbjct: 121 LSALFSWVAS-YLKKYAMQQAFKTMMSQMNS 144

[Close]

BLAST of Spg008827 vs. ExPASy TrEMBL
Match: A0A6J1JYZ5 (protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489149 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 115/148 (77.70%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRP 60
           MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR 
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVGLSA 120
           NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPPPSSYVGSPLFWVGVGVGLSA
Sbjct: 61  NHRIV------VAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSA 120

Query: 121 LFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LFTW +S +L  Y    AF   ++ +NS
Sbjct: 121 LFTWVAS-YLKKYAMQQAFKTMMSQMNS 141

[Close]

BLAST of Spg008827 vs. ExPASy TrEMBL
Match: A0A6J1K0V5 (protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489149 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 115/148 (77.70%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRP 60
           MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR 
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAVNRRS 60

Query: 61  NHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVGLSA 120
           NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPPPSSYVGSPLFWVGVGVGLSA
Sbjct: 61  NHRIV------VAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSA 120

Query: 121 LFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LFTW +S +L  Y    AF   ++ +NS
Sbjct: 121 LFTWVAS-YLKKYAMQQAFKTMMSQMNS 141

[Close]

BLAST of Spg008827 vs. ExPASy TrEMBL
Match: A0A6J1FE53 (protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444690 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.1e-46
Identity = 114/148 (77.03%), Postives = 123/148 (83.11%), Query Frame = 0


Query: 1   MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRP 60
           MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASA NRR 
Sbjct: 1   MDRLNLALTSSPKFVFLGYSSTSSISTPTRTNQLCGSRRLARSRIKYPPRILASAANRRS 60

Query: 61  NHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLFWVGVGVGLSA 120
           NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPPPSSYVGSPLFWVGVGVGLSA
Sbjct: 61  NHRIV------VAERFASVSSSTTSNESSSVGVPSVSVPPPSSYVGSPLFWVGVGVGLSA 120

Query: 121 LFTWGSSVFLLTY--HAAFLIAIATLNS 147
           LFTW +S +L  Y    AF   ++ +NS
Sbjct: 121 LFTWVAS-YLKKYAMQQAFKTMMSQMNS 141

[Close]

BLAST of Spg008827 vs. TAIR 10
Match: AT5G16620.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 50  RICASAVNRRPNHRILGNTPI----RLAERFASVSSSTTSNESSSVGVPSISVPPP-SSY 109
           +I ASA ++ P+ R      I    + ++ FAS+ SS+   +++SV  PS+ VPPP SS 
Sbjct: 45  KISASAQSQSPSSRPENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSST 104

Query: 110 VGSPLFWVGVGVGLSALFTWGSS 128
           +GSPLFW+GVGVGLSALF++ +S
Sbjct: 105 IGSPLFWIGVGVGLSALFSYVTS 127

The following BLAST results are available for this feature:

BLAST of Spg008827 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141408.1	3.4e-47	76.82	protein TIC 40, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_022141409.1	3.4e-47	76.82	protein TIC 40, chloroplastic isoform X2 [Momordica charantia]	[more]
KAG6579066.1	2.2e-46	77.70	Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7016592.1	2.2e-46	77.70	Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022992989.1	2.2e-46	77.70	protein TIC 40, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Spg008827 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GT66	5.8e-10	41.94	Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1	[more]
Q9FMD5	3.8e-09	46.99	Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1	[more]

BLAST of Spg008827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIJ9	1.6e-47	76.82	protein TIC 40, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1CKF2	1.6e-47	76.82	protein TIC 40, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1JYZ5	1.1e-46	77.70	protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1K0V5	1.1e-46	77.70	protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FE53	3.1e-46	77.03	protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Spg008827 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16620.1	2.7e-10	46.99	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47296	PROTEIN TIC 40, CHLOROPLASTIC	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008827.1	Spg008827.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane