Spg008825 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008825
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotrans_gag domain-containing protein
Location	scaffold10: 30079447 .. 30082168 (+)
RNA-Seq Expression	Spg008825
Synteny	Spg008825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTAAGTCAATCCTTCACGTGTGTTCGAACACCAGCTGGATCAAATTACCGTTTTACCCCTAGGTTACCACTGGTTCCTTAAGTACCACTGATCCCTCTAATGAACAAGTTGTTTAGGGTCCAACCACTAAACAGGAGTTCCTCTCAAGCCAAGAGAGGACGGCGCACCTTTGTTCAAGCCCCGGAATCAGCCCTTAAGGGAACTCACATCTACTTACCCCAACAGGGGAAGGAGTGCATTCCAACTTGTATTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCTCATAAATGGTAGGATGATTGAGTCGGCGAACTGGCCACTCTCACCCATACAAACCTAAGGACAATCCTTTCTAAAAGGAGTTCATACTAGACTCAGAATTGAGATTGAGTTACTGTAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTATTGTGGTTTCATGGTTGAATTTAAGTTGTTGGGATTTACTAATTGAAAAGAAGAAAAGAAAAGAATGGAAATAAAGAAGAAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAAACAAAAAAAAAAGGGAAAAAGAAAAGAAATGAAGTGGGAAATGACAAAAAAAAAACACCGACAATGATCCTTTTCAGCTCATTTCCAGCCATTTTCTCATCATTTTCCATCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGCTTTTCTTGAAAGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAAACGTATGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTAGTTTTCTTTGGTTTTTCGAACATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCTTATCCAATTTCTTACAACTTTCATGAAGAATTCGTGAGCCAATAATGACTTGAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGTGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTAATTTCTTCAGGTAAGTTGTAGAGTGTTCAAAAATGAAGAGTTTTATGTATAGTACATTAATTTTGGTTAAGTATTGAGGAATTTATGGGTGTTGGAAGGTGTGGTATTGAATCTGGAAAATAGAATGTGGAGTGAGATTTCTTATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAGCTAATTATGGTTCTAATGCTCGATTTTGGTTGTTTAACAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAATGGTTGTTCATGTTTAGATGTTTTACATGTTTTTCTATGAATGATACATGGTTTTTATGAATTGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCCAAGCATGTATTAGCAAGAATTATTTAAAGATTTTTGGTTTTTCTTCCACGAGCAAGCTGAGTAAGCTTGGGTTTTACGAAAGATAACGATAAGCAGGCATGTTTAAACGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACAAAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGTTAGATTTTTAATGATGAACCTGCGATGTTTTTGAGAAAGCTTTTATCATTGCACGTTTATGTTTAACGCCTTGGTTGAGCAGCTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAATTTAGTCACTCACTGTGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATGTTGAGTCTGTCTATATTGTAAATGTTTTGTAAGGATTGGATATTTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCGGTTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCGACACCTCGTGTATGTTGAAAGGTTTTCAAGGATTCCGCTGTGTTGTGTTTCACGTAGAATATTTTATATCTAAGATTAGTATTCTTATCAGGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGG

mRNA sequence

ATGCAGGTCCAACCACTAAACAGGAGTTCCTCTCAAGCCAAGAGAGGACGGCGCACCTTTGTTCAAGCCCCGGAATCAGCCCTTAAGGGAACTCACATCTACTTACCCCAACAGGGGAAGGAGTGCATTCCAACTTGTATTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCTCATAAATGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGG

Coding sequence (CDS)

ATGCAGGTCCAACCACTAAACAGGAGTTCCTCTCAAGCCAAGAGAGGACGGCGCACCTTTGTTCAAGCCCCGGAATCAGCCCTTAAGGGAACTCACATCTACTTACCCCAACAGGGGAAGGAGTGCATTCCAACTTGTATTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCTCATAAATGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGG

Protein sequence

MQVQPLNRSSSQAKRGRRTFVQAPESALKGTHIYLPQQGKECIPTCIVMFPAPIRSCLINGKAHAKPAIAESEFNLSTSGFLFGLSYTEGTKRPRGNRSGLQTRELAKTVEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

Homology

[Close]

BLAST of Spg008825 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-14
Identity = 62/152 (40.79%), Postives = 72/152 (47.37%), Query Frame = 0


Query: 62  KAHAKPAIAESEFNLSTSGFLFGLSYTEGTK----------------------RPRGNRS 121
           K +AKPAIAES  N      LFGLSY E  +                       PRGNR 
Sbjct: 25  KVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRP 84

Query: 122 GLQTRELAKTVEIELPVPDTLPMSAESSRSSSSSTFQ----------------------- 166
            L T +L KTVEIELPVPDTLP SAESS+S+SS+  +                       
Sbjct: 85  NLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASY 144

[Close]

BLAST of Spg008825 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-13
Identity = 57/130 (43.85%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 82  LFGLSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSA 141
           LFGL Y EGTKRPRGNR+ LQT EL KT                 VEIELPVPDTLP SA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 142 ESSRSSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIF 166
           ESS S+SS+  +                              G    +  D+V WLHA+F
Sbjct: 79  ESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVF 138

[Close]

BLAST of Spg008825 vs. NCBI nr
Match: KAA0037515.1 (uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK01990.1 uncharacterized protein E5676_scaffold808G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-11
Identity = 50/98 (51.02%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 85  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESS 144
           +S  E  + PRGNR  LQT EL KT                 VEIELPV DTLPMSAESS
Sbjct: 91  ISNLENLEMPRGNRLSLQTGELDKTVIFLLLTLTVLCDNDAIVEIELPVSDTLPMSAESS 150

Query: 145 RSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG 166
            S+S S         + EDDV WLH +FR K AGGPGG
Sbjct: 151 GSNSRSA------GIVREDDVCWLHVVFRVKTAGGPGG 182

[Close]

BLAST of Spg008825 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 7.5e-11
Identity = 48/90 (53.33%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 93  RPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTF 152
           RPRGNR  LQT +L KT                 VEIELPVPDTLP SAES  S+S ST 
Sbjct: 54  RPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRST- 113

Query: 153 QEGQRVSLEEDDVRWLHAIFRTKLAGGPGG 166
                  +  DDV WLHA+FR K AGGPGG
Sbjct: 114 -----GIVRGDDVCWLHAVFRAKTAGGPGG 137

[Close]

BLAST of Spg008825 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-10
Identity = 51/124 (41.13%), Postives = 59/124 (47.58%), Query Frame = 0


Query: 85  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESS 144
           +S  E  + PRGNRS LQT EL KT                 VEIELPVPDTLP SAES 
Sbjct: 86  ISNLENLEMPRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESF 145

Query: 145 RSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAG 166
            S+SS+  +                          EG    +  DDV WLH +FR K+AG
Sbjct: 146 GSNSSTWLELYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAG 205

[Close]

BLAST of Spg008825 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.2e-15
Identity = 62/152 (40.79%), Postives = 72/152 (47.37%), Query Frame = 0


Query: 62  KAHAKPAIAESEFNLSTSGFLFGLSYTEGTK----------------------RPRGNRS 121
           K +AKPAIAES  N      LFGLSY E  +                       PRGNR 
Sbjct: 25  KVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRP 84

Query: 122 GLQTRELAKTVEIELPVPDTLPMSAESSRSSSSSTFQ----------------------- 166
            L T +L KTVEIELPVPDTLP SAESS+S+SS+  +                       
Sbjct: 85  NLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASY 144

[Close]

BLAST of Spg008825 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-13
Identity = 57/130 (43.85%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 82  LFGLSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSA 141
           LFGL Y EGTKRPRGNR+ LQT EL KT                 VEIELPVPDTLP SA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 142 ESSRSSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIF 166
           ESS S+SS+  +                              G    +  D+V WLHA+F
Sbjct: 79  ESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVF 138

[Close]

BLAST of Spg008825 vs. ExPASy TrEMBL
Match: A0A5D3BSA6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001020 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.5e-12
Identity = 50/98 (51.02%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 85  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESS 144
           +S  E  + PRGNR  LQT EL KT                 VEIELPV DTLPMSAESS
Sbjct: 91  ISNLENLEMPRGNRLSLQTGELDKTVIFLLLTLTVLCDNDAIVEIELPVSDTLPMSAESS 150

Query: 145 RSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG 166
            S+S S         + EDDV WLH +FR K AGGPGG
Sbjct: 151 GSNSRSA------GIVREDDVCWLHVVFRVKTAGGPGG 182

[Close]

BLAST of Spg008825 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 48/90 (53.33%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 93  RPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTF 152
           RPRGNR  LQT +L KT                 VEIELPVPDTLP SAES  S+S ST 
Sbjct: 54  RPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRST- 113

Query: 153 QEGQRVSLEEDDVRWLHAIFRTKLAGGPGG 166
                  +  DDV WLHA+FR K AGGPGG
Sbjct: 114 -----GIVRGDDVCWLHAVFRAKTAGGPGG 137

[Close]

BLAST of Spg008825 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 51/124 (41.13%), Postives = 59/124 (47.58%), Query Frame = 0


Query: 85  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESS 144
           +S  E  + PRGNRS LQT EL KT                 VEIELPVPDTLP SAES 
Sbjct: 86  ISNLENLEMPRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESF 145

Query: 145 RSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAG 166
            S+SS+  +                          EG    +  DDV WLH +FR K+AG
Sbjct: 146 GSNSSTWLELYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAG 205

The following BLAST results are available for this feature:

BLAST of Spg008825 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052218.1	1.9e-14	40.79	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0051980.1	3.6e-13	43.85	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
KAA0037515.1	2.0e-11	51.02	uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0060199.1	7.5e-11	53.33	uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0067117.1	3.7e-10	41.13	hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747...	[more]

BLAST of Spg008825 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAH6	9.2e-15	40.79	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7U9X4	1.7e-13	43.85	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BSA6	9.5e-12	51.02	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BAD1	3.6e-11	53.33	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VIY9	1.8e-10	41.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg008825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008825.1	Spg008825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016740	transferase activity