Spg008812 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008812
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	30S ribosomal protein S1 homolog A isoform X2
Location	scaffold10: 37007917 .. 37010184 (+)
RNA-Seq Expression	Spg008812
Synteny	Spg008812

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACGCGGCCGAGCTCAGCTCATGAGGTGGGCAGCAAAAAAAGATGCTAATCCTTGCGGGACTTCAACCCTGTAAGTATATTTGCGTTCCCAGATCGTCATTTGAGCCTCAAGATTTCTTAGTTGCATCCAGTTCCATTAGAACTTCAGCATTTCTCACCGTTCCCAGACTTCTAACTCCACGAATCTCAAATTCCAAGTTCTGTTCCACTTCTAATTGGTCCAATAACTGTAACAAATTTAAGAAGTTGCCATTTCGGGAAAGAAATAGCGTAGCGTTTTGCTCTAGGAATGATGTTTTTGATAATTTCTCGAGCACCCAGTTGCCGGATAATCCTCAAGAGGATGGAATTCCGACGAGAATGAGGCTTTGGCGCCATTTATGAAGTTCTTTAAGTCTAAAGATTCTGTAGAAGAAGAGGAAGAAGAGGAAAAAACATTACAAGCTTTTGAGGAGAAAATTGATGGAGATGATGAGACCGAGAAAGCCAATAAGTTAAATGTTGAGTACTATGAGCCCAAACCTAGAGATGTTGTGGTTGATGTGGTTGTCTCAGGTATCGAAAACAAGCTCGATATCAACGTGGGAGCGGATTTATTGGGAACAATGTTGACTAAAGAAGTGCTTCCCTTGTATGACAAAGAGATGGAGTTTTTGATTTGTGATCTTGACAATGATGCTGAGTCTTTTATGGTGAATGGAAAGATGGGGTTGGTGATATATGATGGTGCTGTTAGCCGTGGACCGGGGCCAGTGCGCCCTGTTGTGGAGACTCGCACAGAGTTTTGTTTGCTGTGGTTCTGGGAAGGACACTCAGTGGTTGTCCATTGCTCTCGACAAGAAGGTACTTTCGACGGTTAGCCTGGCATCGAATGAGGCAGGTTCTTTTCTTGATTAGCTTCTCTGTTTATTGAAGTTTCTGTTTTAGGGGGCAGAAAGAAGAAATGTATATATTTGTTGTGGTTTCCTTGGTCGACAGATAAAACGACTCTTTAAGCCAATTGAAGTTAAAATATCGGAGTGGAATACTGGAGGCCTTCTTACACTTGAGGTTGTCTATGCGATAGTGACTCATTTGGTCTTTAGCTTATACATTTGTTTGGGTGGCTTATATTTCATTTTGGTTTTGAACTTTTGTTGTGCAGAGTTTGCGAGCATTTCTTCCAAAGGCTGAGTTATTGAATCGAGTACATAACTTCACAGAGTCAAAAGAAAATGTGAGTAGGATCCAGTTTCTTCTATTTTTGAGCTGCCATCTGCGTTACCTCACCCTTCATTTAAATGGCATCTCCATCTTCCATCGAAAATGATCGTTGCCTCGAGACTGCAGATTTACTATGTTCTACAAACATTGTTGTGTTTCTTTATTTACTGACTAGAATAGTACCAAGGATAATATGAAATTACGTATAGAGATGTTCAAGGAACACCATTTAGATATTATTTACTATAACATAGCAAGAAATTATTTCTGCTTTGGGGCCTGCCATATTCTGTTGTTCTTATTAATCTTTAGTTTCTGAAGTTATTGACGCATCCGCTCGAATGTTCCTCAGTGGGTTACTCCATGTTTCGAACATCACCCGTGCTCGAGTTACCTCGGTGAGCGACTTTACTTGCAGTGGGTGAAATGGTCCAAGTTTTAGTTGTGAAGTCAATGTTTCCTGACAAGACATCTCTAAGGTAATTCAAGAGTATATTACTCAATTTAACAGTCATGGTTGGTACCTCTTATAACTAATCATTTTGCTTTTGTGGCTTTACAGTATTGCAGACCTCGAAAGTGAGCCCGGCCTCTTTATATCGAACAAAGAGGTAATACTCATAATGATCTTCCTCACCATTGAACTTCATTTTATTCGAAATTTGACTCGGTCGTTTTTTCTTTTCCTTTATTAGAAAGTATTTTCAGAGGCCAAGATCATGGCGAAGAAGTTCAGGCAAAAGCTACCTGCGGTCGAAGGCATTCCCTGGCCAGAACCTGCTCCAACTATTGATCTTCTGTTTGAAAATGAATGGAACATGTATGCAAATTGGAAGTGGTTCAAATTCGAAAGGTAGTTGTCAAGTTTAATGATAGCTCTTTCATGCTACCAACTGCGCCTTACTCCATGGTAAAGAATTGGTAATATATTTAGCAGGGCAATAGTTCCCTTAGGTTGACGAATCGTTTTCGTTATCATCGGTCCCGGTTGATTTCAAGGAATGATAAAATCCAGGGAATGGGAAGTGTAAAAGATCAAATTTTGAACATCGTAAGGCCCG

mRNA sequence

ATGCGACGCGGCCGAGCTCAGCTCATGAGGTGGGCAGCAAAAAAAGATGCTAATCCTTGCGGGACTTCAACCCTAGGATGGAATTCCGACGAGAATGAGGCTTTGGCGCCATTTATGAAGTTCTTTAAGTCTAAAGATTCTGTAGAAGAAGAGGAAGAAGAGGAAAAAACATTACAAGCTTTTGAGGAGAAAATTGATGGAGATGATGAGACCGAGAAAGCCAATAAGTTAAATGTTGAGTACTATGAGCCCAAACCTAGAGATGTTGTGGTTGATGTGGTTGTCTCAGGTATCGAAAACAAGCTCGATATCAACGTGGGAGCGGATTTATTGGGAACAATGTTGACTAAAGAAGTGCTTCCCTTGTATGACAAAGAGATGGAGTTTTTGATTTGTGATCTTGACAATGATGCTGAGTCTTTTATGGTGAATGGAAAGATGGGGTTGGTGATATATGATGGTGCTGTTAGCCGTGGACCGGGGCCAGTGCGCCCTGTTGTGGAGACTCGCACAGAGTTTTGTTTGCTGTGGTTCTGGGAAGGACACTCAATAAAACGACTCTTTAAGCCAATTGAAGTTAAAATATCGGAGTGGAATACTGGAGGCCTTCTTACACTTGAGAGTTTGCGAGCATTTCTTCCAAAGGCTGAGTTATTGAATCGAGTACATAACTTCACAGAGTCAAAAGAAAATTTTCTGAAGTTATTGACGCATCCGCTCGAATGTTCCTCAGTGGGTTACTCCATGTTTCGAACATCACCCGTGCTCGAGTTACCTCGTATTGCAGACCTCGAAAGTGAGCCCGGCCTCTTTATATCGAACAAAGAGAAAGTATTTTCAGAGGCCAAGATCATGGCGAAGAAGTTCAGGCAAAAGCTACCTGCGGTCGAAGGCATTCCCTGGCCAGAACCTGCTCCAACTATTGATCTTCTGTTTGAAAATGAATGGAACATGTATGCAAATTGGAAGTGGTTCAAATTCGAAAGGTAG

Coding sequence (CDS)

ATGCGACGCGGCCGAGCTCAGCTCATGAGGTGGGCAGCAAAAAAAGATGCTAATCCTTGCGGGACTTCAACCCTAGGATGGAATTCCGACGAGAATGAGGCTTTGGCGCCATTTATGAAGTTCTTTAAGTCTAAAGATTCTGTAGAAGAAGAGGAAGAAGAGGAAAAAACATTACAAGCTTTTGAGGAGAAAATTGATGGAGATGATGAGACCGAGAAAGCCAATAAGTTAAATGTTGAGTACTATGAGCCCAAACCTAGAGATGTTGTGGTTGATGTGGTTGTCTCAGGTATCGAAAACAAGCTCGATATCAACGTGGGAGCGGATTTATTGGGAACAATGTTGACTAAAGAAGTGCTTCCCTTGTATGACAAAGAGATGGAGTTTTTGATTTGTGATCTTGACAATGATGCTGAGTCTTTTATGGTGAATGGAAAGATGGGGTTGGTGATATATGATGGTGCTGTTAGCCGTGGACCGGGGCCAGTGCGCCCTGTTGTGGAGACTCGCACAGAGTTTTGTTTGCTGTGGTTCTGGGAAGGACACTCAATAAAACGACTCTTTAAGCCAATTGAAGTTAAAATATCGGAGTGGAATACTGGAGGCCTTCTTACACTTGAGAGTTTGCGAGCATTTCTTCCAAAGGCTGAGTTATTGAATCGAGTACATAACTTCACAGAGTCAAAAGAAAATTTTCTGAAGTTATTGACGCATCCGCTCGAATGTTCCTCAGTGGGTTACTCCATGTTTCGAACATCACCCGTGCTCGAGTTACCTCGTATTGCAGACCTCGAAAGTGAGCCCGGCCTCTTTATATCGAACAAAGAGAAAGTATTTTCAGAGGCCAAGATCATGGCGAAGAAGTTCAGGCAAAAGCTACCTGCGGTCGAAGGCATTCCCTGGCCAGAACCTGCTCCAACTATTGATCTTCTGTTTGAAAATGAATGGAACATGTATGCAAATTGGAAGTGGTTCAAATTCGAAAGGTAG

Protein sequence

MRRGRAQLMRWAAKKDANPCGTSTLGWNSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVETRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLTLESLRAFLPKAELLNRVHNFTESKENFLKLLTHPLECSSVGYSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

Homology

[Close]

BLAST of Spg008812 vs. NCBI nr
Match: XP_038886053.1 (protein PIGMENT DEFECTIVE 338, chloroplastic [Benincasa hispida])

HSP 1 Score: 388.7 bits (997), Expect = 5.2e-104
Identity = 233/400 (58.25%), Postives = 256/400 (64.00%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N DENEALAPFMKFFK+KDS +EEEEEEK L+AFEEKIDGDDETEK NKLNVEYYEPKP 
Sbjct: 134 NLDENEALAPFMKFFKTKDSADEEEEEEKALRAFEEKIDGDDETEKGNKLNVEYYEPKPG 193

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKEMEFL+CDLD DAESFM+NGKM
Sbjct: 194 DVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDKDAESFMMNGKM 253

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV Y+ A SRGPGP RPVVE                     TR  F  L +     IKR
Sbjct: 254 GLVKYEDAFSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKR 313

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKL----- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F+++     
Sbjct: 314 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQITRIDE 373

Query: 268 ----------------------------------------------------------LT 327
                                                                     +T
Sbjct: 374 AKNDLILSERQAWESLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 433

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFISNKEKVFSEAKIMA+++
Sbjct: 434 SVSDLLAVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFISNKEKVFSEAKIMAREY 493

[Close]

BLAST of Spg008812 vs. NCBI nr
Match: XP_023551503.1 (uncharacterized protein LOC111809291 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.9 bits (995), Expect = 8.8e-104
Identity = 234/400 (58.50%), Postives = 255/400 (63.75%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N DENEALAPFMKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E  KA KLNVEYYEPKP 
Sbjct: 129 NPDENEALAPFMKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKATKLNVEYYEPKPG 188

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+EFL+CDLD DAESFM+NGKM
Sbjct: 189 DVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKM 248

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV YD AVSRGPGP RPVVE                     TR  F  L +     IKR
Sbjct: 249 GLVKYDDAVSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKR 308

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F++++    
Sbjct: 309 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDE 368

Query: 268 -----------------------------------------------------------T 327
                                                                      T
Sbjct: 369 AKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 428

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFISNKEKVFSEAKIMAKK+
Sbjct: 429 SVSDLLAVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFISNKEKVFSEAKIMAKKY 488

[Close]

BLAST of Spg008812 vs. NCBI nr
Match: KAG7016396.1 (30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387.5 bits (994), Expect = 1.2e-103
Identity = 233/400 (58.25%), Postives = 254/400 (63.50%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N DENEALAPFMKFFKS D+VEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP 
Sbjct: 129 NPDENEALAPFMKFFKSTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPG 188

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           D+VV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+EFL+CDLD DAESFM+NGKM
Sbjct: 189 DIVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKM 248

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV YD A SRGPGP RPVVE                     TR  F  L +     IKR
Sbjct: 249 GLVKYDDAFSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKR 308

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F++++    
Sbjct: 309 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDE 368

Query: 268 -----------------------------------------------------------T 327
                                                                      T
Sbjct: 369 AKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 428

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFISNKEKVFSEAKIMAKK+
Sbjct: 429 SVSDLLAVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFISNKEKVFSEAKIMAKKY 488

[Close]

BLAST of Spg008812 vs. NCBI nr
Match: KAG6578864.1 (Protein PIGMENT DEFECTIVE 338, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387.1 bits (993), Expect = 1.5e-103
Identity = 231/389 (59.38%), Postives = 253/389 (65.04%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N DENEALAPFMKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP 
Sbjct: 129 NPDENEALAPFMKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPG 188

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           D+VV VVVSG ENKLDINVGADLLGTMLTKEVLPL+DKE+EFL+CDLD DAESFM+NGKM
Sbjct: 189 DIVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLHDKEVEFLMCDLDKDAESFMMNGKM 248

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV YD A SRGPGP RPVVE                     TR  F  L +     IKR
Sbjct: 249 GLVKYDDAFSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKR 308

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-------------- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN              
Sbjct: 309 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVNEAKNDLILSERQ 368

Query: 268 -----FLK--------------------------------------LLTHPLECSSVG-- 327
                +L+                                       +T   +  +VG  
Sbjct: 369 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLAVGEK 428

Query: 328 ------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIP 330
                  SMF     L    IADLESEPGLFISNKEKVFSEAKIMAKK+RQ+LP VEG  
Sbjct: 429 VKVLVVKSMFPDKISLS---IADLESEPGLFISNKEKVFSEAKIMAKKYRQRLPVVEGFT 488

[Close]

BLAST of Spg008812 vs. NCBI nr
Match: XP_022994056.1 (uncharacterized protein LOC111489862 [Cucurbita maxima])

HSP 1 Score: 385.2 bits (988), Expect = 5.7e-103
Identity = 233/400 (58.25%), Postives = 254/400 (63.50%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N  ENEALAPFMKFFK+ DSVEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP 
Sbjct: 129 NPGENEALAPFMKFFKNTDSVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPG 188

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+EFL+CDLD DAESFM+NGKM
Sbjct: 189 DVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKM 248

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV YD AVSRGPGP RPVVE                     TR  F  L +     IKR
Sbjct: 249 GLVKYDDAVSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKR 308

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F++++    
Sbjct: 309 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDE 368

Query: 268 -----------------------------------------------------------T 327
                                                                      T
Sbjct: 369 AKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 428

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFISNKEKVF EAKIMAKK+
Sbjct: 429 SVSDLLAVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFISNKEKVFLEAKIMAKKY 488

[Close]

BLAST of Spg008812 vs. ExPASy Swiss-Prot
Match: Q9M9H4 (Protein PIGMENT DEFECTIVE 338, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE338 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.6e-58
Identity = 159/399 (39.85%), Postives = 208/399 (52.13%), Query Frame = 0


Query: 29  SDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRD 88
           +D++  L PF+KFFK ++  E  E E              DET+   +++VEYY+PKP D
Sbjct: 115 ADDDAILEPFLKFFKPEEEGEGIESEV------------SDETD---RVSVEYYDPKPGD 174

Query: 89  VVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKMG 148
            VV VVVSG ENKLD+N+GAD+LGTMLTKE+LPLYDKE+++L+CDL  DAE F+VNGKMG
Sbjct: 175 FVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDLKYDAEEFLVNGKMG 234

Query: 149 LVIYD------GAVSRGPGPV------------------RPVVETRTEFCLLWFWEGHSI 208
           +V  D         +R   PV                  RP++ +R  F  + +     I
Sbjct: 235 IVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSRRYFRRIAWHRVRQI 294

Query: 209 KRLFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN----FLKLLTHP 268
           K+L +PIEVKI+EWNTGGLLT +E LRAF+PK EL+ +V+ FTE KEN    FL  +T  
Sbjct: 295 KQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELKENVGRRFLVQITRL 354

Query: 269 LE-------CSSVGYS--MFRTSPVLE------LP------------------------- 328
            E          V +     R   +LE      LP                         
Sbjct: 355 NEDKNDLILSEKVAWEKLYLREGTLLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRR 414

[Close]

BLAST of Spg008812 vs. ExPASy TrEMBL
Match: A0A6J1JY23 (uncharacterized protein LOC111489862 OS=Cucurbita maxima OX=3661 GN=LOC111489862 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.8e-103
Identity = 233/400 (58.25%), Postives = 254/400 (63.50%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N  ENEALAPFMKFFK+ DSVEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP 
Sbjct: 129 NPGENEALAPFMKFFKNTDSVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPG 188

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+EFL+CDLD DAESFM+NGKM
Sbjct: 189 DVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKM 248

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV YD AVSRGPGP RPVVE                     TR  F  L +     IKR
Sbjct: 249 GLVKYDDAVSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKR 308

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F++++    
Sbjct: 309 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDE 368

Query: 268 -----------------------------------------------------------T 327
                                                                      T
Sbjct: 369 AKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 428

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFISNKEKVF EAKIMAKK+
Sbjct: 429 SVSDLLAVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFISNKEKVFLEAKIMAKKY 488

[Close]

BLAST of Spg008812 vs. ExPASy TrEMBL
Match: A0A6J1FMS2 (uncharacterized protein LOC111445605 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445605 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.6e-103
Identity = 233/400 (58.25%), Postives = 254/400 (63.50%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N DENEALAPFMKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP 
Sbjct: 129 NPDENEALAPFMKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPG 188

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+EFL+CDLD DAESFM+NGKM
Sbjct: 189 DVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKM 248

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV YD AVSRG GP RPVVE                     TR  F  L +     IKR
Sbjct: 249 GLVKYDDAVSRGLGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKR 308

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F++++    
Sbjct: 309 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDE 368

Query: 268 -----------------------------------------------------------T 327
                                                                      T
Sbjct: 369 AKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 428

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFISNKEKVFSEAKIMAKK+
Sbjct: 429 SVSDLLAVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFISNKEKVFSEAKIMAKKY 488

[Close]

BLAST of Spg008812 vs. ExPASy TrEMBL
Match: A0A6J1FIE7 (uncharacterized protein LOC111445605 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445605 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.6e-101
Identity = 232/400 (58.00%), Postives = 253/400 (63.25%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N DENEALAPFMKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP 
Sbjct: 129 NPDENEALAPFMKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPG 188

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+EFL+CDLD DAESFM+NGKM
Sbjct: 189 DVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKM 248

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV YD AVSRG GP RPVVE                     TR  F  L +     IKR
Sbjct: 249 GLVKYDDAVSRGLGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKR 308

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F++++    
Sbjct: 309 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDE 368

Query: 268 -----------------------------------------------------------T 327
                                                                      T
Sbjct: 369 AKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 428

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFISNKE VFSEAKIMAKK+
Sbjct: 429 SVSDLLAVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFISNKE-VFSEAKIMAKKY 488

[Close]

BLAST of Spg008812 vs. ExPASy TrEMBL
Match: A0A5A7TVE5 (30S ribosomal protein S1-like protein A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001510 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 4.4e-101
Identity = 229/400 (57.25%), Postives = 254/400 (63.50%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N DENEALAPFMKFFK+KDS +E+EEE+K L+AFEEKIDGDDETE ANKLNVEYYEPKP 
Sbjct: 156 NPDENEALAPFMKFFKNKDSADEKEEEDKALRAFEEKIDGDDETEIANKLNVEYYEPKPG 215

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKEMEFL+CDLD DAESFM+NGKM
Sbjct: 216 DVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDKDAESFMMNGKM 275

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV Y+ A SRG GP RPVVE                     TR  F  L +     IK 
Sbjct: 276 GLVKYEDAFSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKG 335

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKL----- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F+++     
Sbjct: 336 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQITRIDE 395

Query: 268 ----------------------------------------------------------LT 327
                                                                     +T
Sbjct: 396 AKNDLILSEKQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 455

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFI+NKEKVFSEAKIMAKK+
Sbjct: 456 SVSDLLTVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFITNKEKVFSEAKIMAKKY 515

[Close]

BLAST of Spg008812 vs. ExPASy TrEMBL
Match: A0A5D3BZ92 (30S ribosomal protein S1-like protein A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00960 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 4.4e-101
Identity = 229/400 (57.25%), Postives = 254/400 (63.50%), Query Frame = 0


Query: 28  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPR 87
           N DENEALAPFMKFFK+KDS +E+EEE+K L+AFEEKIDGDDETE ANKLNVEYYEPKP 
Sbjct: 118 NPDENEALAPFMKFFKNKDSADEKEEEDKALRAFEEKIDGDDETEIANKLNVEYYEPKPG 177

Query: 88  DVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKM 147
           DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKEMEFL+CDLD DAESFM+NGKM
Sbjct: 178 DVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDKDAESFMMNGKM 237

Query: 148 GLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKR 207
           GLV Y+ A SRG GP RPVVE                     TR  F  L +     IK 
Sbjct: 238 GLVKYEDAFSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKG 297

Query: 208 LFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN-----FLKL----- 267
           L +PIEVKISEWNTGGLLT +E LRAFLPKAELLNRV+NFTE KEN     F+++     
Sbjct: 298 LDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQITRIDE 357

Query: 268 ----------------------------------------------------------LT 327
                                                                     +T
Sbjct: 358 AKNDLILSEKQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVT 417

Query: 328 HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKF 330
              +  +VG         SMF     L    IADLESEPGLFI+NKEKVFSEAKIMAKK+
Sbjct: 418 SVSDLLTVGEKVKVLVVKSMFPDKISLS---IADLESEPGLFITNKEKVFSEAKIMAKKY 477

[Close]

BLAST of Spg008812 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 227.3 bits (578), Expect = 1.9e-59
Identity = 159/399 (39.85%), Postives = 208/399 (52.13%), Query Frame = 0


Query: 29  SDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRD 88
           +D++  L PF+KFFK ++  E  E E              DET+   +++VEYY+PKP D
Sbjct: 115 ADDDAILEPFLKFFKPEEEGEGIESEV------------SDETD---RVSVEYYDPKPGD 174

Query: 89  VVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKMG 148
            VV VVVSG ENKLD+N+GAD+LGTMLTKE+LPLYDKE+++L+CDL  DAE F+VNGKMG
Sbjct: 175 FVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDLKYDAEEFLVNGKMG 234

Query: 149 LVIYD------GAVSRGPGPV------------------RPVVETRTEFCLLWFWEGHSI 208
           +V  D         +R   PV                  RP++ +R  F  + +     I
Sbjct: 235 IVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSRRYFRRIAWHRVRQI 294

Query: 209 KRLFKPIEVKISEWNTGGLLT-LESLRAFLPKAELLNRVHNFTESKEN----FLKLLTHP 268
           K+L +PIEVKI+EWNTGGLLT +E LRAF+PK EL+ +V+ FTE KEN    FL  +T  
Sbjct: 295 KQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELKENVGRRFLVQITRL 354

Query: 269 LE-------CSSVGYS--MFRTSPVLE------LP------------------------- 328
            E          V +     R   +LE      LP                         
Sbjct: 355 NEDKNDLILSEKVAWEKLYLREGTLLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRR 414

The following BLAST results are available for this feature:

BLAST of Spg008812 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886053.1	5.2e-104	58.25	protein PIGMENT DEFECTIVE 338, chloroplastic [Benincasa hispida]	[more]
XP_023551503.1	8.8e-104	58.50	uncharacterized protein LOC111809291 [Cucurbita pepo subsp. pepo]	[more]
KAG7016396.1	1.2e-103	58.25	30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6578864.1	1.5e-103	59.38	Protein PIGMENT DEFECTIVE 338, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_022994056.1	5.7e-103	58.25	uncharacterized protein LOC111489862 [Cucurbita maxima]	[more]

BLAST of Spg008812 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9H4	2.6e-58	39.85	Protein PIGMENT DEFECTIVE 338, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Spg008812 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JY23	2.8e-103	58.25	uncharacterized protein LOC111489862 OS=Cucurbita maxima OX=3661 GN=LOC111489862...	[more]
A0A6J1FMS2	3.6e-103	58.25	uncharacterized protein LOC111445605 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FIE7	2.6e-101	58.00	uncharacterized protein LOC111445605 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7TVE5	4.4e-101	57.25	30S ribosomal protein S1-like protein A isoform X2 OS=Cucumis melo var. makuwa O...	[more]
A0A5D3BZ92	4.4e-101	57.25	30S ribosomal protein S1-like protein A isoform X2 OS=Cucumis melo var. makuwa O...	[more]

BLAST of Spg008812 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71720.1	1.9e-59	39.85	Nucleic acid-binding proteins superfamily	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 44..64
None	No IPR available	PANTHER	PTHR15838	NUCLEOLAR PROTEIN OF 40 KDA	coord: 28..171
None	No IPR available	PANTHER	PTHR15838:SF3	F14O23.10 PROTEIN	coord: 183..231 coord: 28..171
None	No IPR available	PANTHER	PTHR15838:SF3	F14O23.10 PROTEIN	coord: 261..329
None	No IPR available	PANTHER	PTHR15838	NUCLEOLAR PROTEIN OF 40 KDA	coord: 183..231 coord: 261..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008812.1	Spg008812.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding