Spg008689 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008689
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Locationscaffold10: 31472597 .. 31477088 (-)
RNA-Seq ExpressionSpg008689
SyntenySpg008689
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGTAACCTCATTTCTTCCTTCGTTCTTCACATGTTCTTGCCCTCTCTCCTTCTCCTCTCTTCTGGGTTGGCAGATCTGAAGGTTAGGTGAGTTTGTTCCTTTTTTTTTTCACGATTTGAAGGTGTTCTTCATTTTTTTATTCCGATCTGACCTCGGATTTGTCTTCTTTCTTCACGTTTTGTTCGGATCTGAACATCATACTCCCGTCCCGTTACGTCTTGGGGTCTTGGATTAACTGCATGTGATATCCGTCTTCATCAATCTCGGTTTAAGTTTGTTTCCTCCTCGCCCCTTCTTTTGGATCTACGACTGTGGGTAATTTTTTTTTAGGTTTTTTTTAATTTTTTTTTACCATTCGGTCATCTGGTTTTTTCTGCTCGTCCGTTTTTGTTCTTCAATTTAATCTTTTTGTTGTTTCGTTTTTTTCGTTTTTACAGAAACCCATCTCATGCCACTTCAACTTGTCATGGGTGTCGACGATATGAATCGATATCCGCTTGGTAGATTGGGGCACAGTGAGGGGTGGGACGAAGGTAAGGGGTAATCGGCCAATGATGTATTGGAGCTAGCAACCTGAAAACATGTTTAATTTTTTTTTATCTGCCTTGTTGTTGTAGTTTGTTCCTCTTCTGATTTGTCGTTTGTTAATTGGTTTTGTTTGTAGGTTGCTTTTTTCTTTTCTTGTGGACTCCGATTGTTCTTCATAGTGTTGTGTAAATTTGACACCCCCCCATTCGTATTTTGTGTTCATGCTGTTGCGTAAATTTGATTCCTCTGATGACCCTCCACCCCCAATTCGTATTATGTCTTCATGCTCACTGGTCAGTACATTTGTTTTTCTATTCCTCTTTCACTTGTTCATGGTCACTGTTCTGTGTTGCATTCTTGTTTTTTCCTTGTCGTTTTTTTTCCCTGATCTGTTTCCGTCTTATTTATCCTGTTCTGCCCACATAATTCGAGTTAAATTTGTTTGCTGGCCACATTATTTGATTTGATTTTGTCTTCTTTTGCCCACAATATTTTATTCAAGTTTGTGTTCTTCATTTACATGCCAGTGTTCTTCATTTACATGCCAGTGTTCAATAGATTGTGTTTTTTCCACTTCTTTCTTATTTCATACTTGTTTGTCCGTTTCTTTTTGGCCATATTTGTTTGACTTCCATGGTCTTTTTTGTTCCTTCATGTCAATTTCATGTTGTTTTCCAAATTTCGAAATGTTTTCTGCATTGAACAAAAACATGGTTGAAAAAAAAATCCAACTGAGGCCGGTTACATTTATGTTGACTTCATAAATGCAACCAACCTTCTGAGTTAATAAATAAAGGTAGCTGGCATTTATATTTTGTGGTTTAATTATGCAACCACTGCTTGTACTTTCATTCAACCACCTCTTTCAATCCTTTCCTTATTTAAAGAAGACCATCATTTCCTAATTTCTTTGAGGAAAGTCTCCACTGCATTGGATAGTCCATCTAAACGGTGAGTCATTTTCCAACTTCCATACTTTTCTTTCTTTGTGTTGCTATGTATACCAAGTTCTTCGTTATACTAACTACAATCTCTTCTTATCTTCTGCCCCTAAAGACAAACCTAAACCCGATCTCCACCTTCTTCTGTTTCGTTTCACGCATCCCGATCTCATATAACGGTAAGTTTTCGTTCTCTTCCTTTGTTCGCTTCGTTTGTACTATGTCTACATTCATACGATCATATCTTAATAACTTTCTCCCTTTATGTCATATGCTTGCAGGTTTACTCCAAAAAACACCGTTATATTCGAGGTTCGTTCATTCAATTTAAATACCCTTATACTGTTCTGTAAATTGTGTATATTCTTTGTTCTGGACATTACAAACTGTTTCATTTGTATTACTGAATTTCGGACATTTCGTTGGTTTTTTTTGTTTTTTCACGTTGTATTGTTCATTGCGTTAGTATTTTAGCTTATGTAATGATATCATTTTCTGTATAAATGAATTTTTTCTTATGAAATATGTTGACGAATATTTTAAATAAATGGAAGTAAAAAATATGTCACGTTGTTTGAATGAATATTTAGTTGCTAAAATTCATCATGGTTTTACAATCAATTTTTATTTAGAATGTTGACAAAAAGATGCAGTAGCAATTATGTAATGACATGTTCACTAAAATGTTGAAACAAAAAAAAAAAAAATGGAATTTGAAGTTTACTATAACACAAGTTAAATTTAGTTGCAATTATGGAAAAATGGTTTCGATAATATGTACATTTGCTTTAAAGAAGCTAAAATTTGTTTGACTCCCTCTTGCTTGTTTCTGCAATTTTAGTTTTAAAAAAAATTGAGACCTCACTATAATATGAAAAATGTTCGGTTTTTTTTTTTTTTTTATCTACAACACTTTACTGAAAAATTAATTTTAAATGAATAAATTATATTAAAAGAAATTTAATTTGGATTTCAGTTTTCATTCAAGTTTTTCAACACACTGATTAATATCATATTTGTACTAACAAGTGAAAAAGGAATGAAATTAAAAATTAACCACATTCATGTAATTAGAATGAATAAAAGTGATTTCATAAAAAAAGAAATAAACAACATACATCTTATTAAAGTAATCTGTTTTTTTTTTTTTTTTCACAAAATTGAAGTCATGAAAATAACATTGTCATATGGTTTCAAAAAAAAGCCACTGAATGAACTTTTTAGTACATTTTTTTCTTCCAATTAGAGTTATTATGTTCAAAATTGTAGGAAAATAAATTTTATAACTTCAATGAGTTAAGAAGTTCAACATCCAAGTCAAATGAATTTTGTACTTTCCATTAGAGTTAATAGTAGCAAAATTAAGGTAAAACAGATTTCCTAATTTGTGCTAGAGGTAAGAAGTTCAAATTTGAAGTAAAATACATTCCCTAATTCCAATTTGAGTTAAAGAAGTTTAAAATTGAAGTAATCAAAATATCATGTTTTGTCATTGAAGAGCATTTCATATTATTATCTTTATTAAAGGGTTTTTTTATATGATTTTATTTTCATTTTTTATGAGTTTAATTGCACAAAGAATTTCAAAAAACAAGTATTCAAAATGTTCCTATTATATATATGCTCAATTTATATCTTATCACATCCTTTGATTTTCATTAAGCTTACTTTACTTTAATTGTACTTTGATACTTGTCTATATTATGTGAGCTTAATAATCTATCTTAGTTTAGTCTAGGGGTTATTGTGCATTTCGAACGTATACTTCTAAACCCCAAAAGATAGATTCAATCATTTGGTAAAATAATACACAGTTGTTTTGTGGCGAAAGAACAAATTATATAAATTACCTTTTCACCCAAAACCCCAAATCATAAACCCTAAACTTGCCAAACCCTAAATCGTAAACCCTAAACCCTAAACCACTCAACCACTAAACCCTAAACCCTAAACCACTTAACCACTAAACCGTAAACCAGTAAACCCTAAACCCTTAACCACTAAACCCACTTAACACCTGAACCGTAAACCACTTAACCACTAAACCACTAAACCCTAAACCACTTAACCACTAAACTCACTTAAGCAGTGAACCCTAAACCACTTAATGACTAAACCCAATTAACCACTAGACCCTAAACCACTAAACCTTAAACCCTAACTCGTAAACCACTTAACCACTAAACCCTAAACCGTAAACCACTTAACCACTGAACACTAAACCCAAAAGCTTGTAACCTAAATCACGAACCCCAAAGTCACCGAACCCTAAAACCTAAATACTAAACCCTAAACCCTAAAACCCTAAACCACTAAGACTAAAATCCGGATTCTTGTAATCATAAAACGAAATAACAAGCTTTAAATATAGACGATAGGTGACTGCTTGACTTGGTACATTTTGAATAATAGGACTATGGGGGCAACGAAATTCTATGTCGTGTTTGTTGGTCGCAACCCAGGAATTTACACTTCCTGGGTTGAATGCCACAGACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTATGTTGCGGGCACCCGTGGCGAACCAAACCTAGTTGACCAACATGAAGTGTGTCGTAACCTTCCTGTAAGGGGGCTATGGAACCGTAGGAAACTGTTACAGTATTAGTCAGATGTTTATATGGTTCCTGTTCGGAATAATTGTAACTTACGTCATCGTTCACTATCTTTAGAATGCTAGCGTATCCCCTTGTAAGATGAGTAATGCTTTGAACTAAATAAAAGTCGGTTTATGTTTTGTCCAGGCTGAAGTAGTACCGTTCATAATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGA

mRNA sequence

ATGGTTTGTAACCTCATTTCTTCCTTCGTTCTTCACATGTTCTTGCCCTCTCTCCTTCTCCTCTCTTCTGGGTTGGCAGATCTGAAGGTTAGAAACCCATCTCATGCCACTTCAACTTGTCATGGGTGTCGACGATATGAATCGATATCCGCTTGGACTATGGGGGCAACGAAATTCTATGTCGTGTTTGTTGGTCGCAACCCAGGAATTTACACTTCCTGGGTTGAATGCCACAGACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTATGTTGCGGGCACCCGTGGCGAACCAAACCTAGTTGACCAACATGAAGTGTGTCGTAACCTTCCTGCTGAAGTAGTACCGTTCATAATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGA

Coding sequence (CDS)

ATGGTTTGTAACCTCATTTCTTCCTTCGTTCTTCACATGTTCTTGCCCTCTCTCCTTCTCCTCTCTTCTGGGTTGGCAGATCTGAAGGTTAGAAACCCATCTCATGCCACTTCAACTTGTCATGGGTGTCGACGATATGAATCGATATCCGCTTGGACTATGGGGGCAACGAAATTCTATGTCGTGTTTGTTGGTCGCAACCCAGGAATTTACACTTCCTGGGTTGAATGCCACAGACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTATGTTGCGGGCACCCGTGGCGAACCAAACCTAGTTGACCAACATGAAGTGTGTCGTAACCTTCCTGCTGAAGTAGTACCGTTCATAATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGA

Protein sequence

MVCNLISSFVLHMFLPSLLLLSSGLADLKVRNPSHATSTCHGCRRYESISAWTMGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPAEVVPFIMDSITPHELVSVLSIMADSQRQLFNLINSFMNNHPRIENQTPYLRHQTPDKAVSLLPVDS
Homology
[Close]
BLAST of Spg008689 vs. NCBI nr
Match: RYR74402.1 (hypothetical protein Ahy_A02g009104 [Arachis hypogaea])

HSP 1 Score: 78.6 bits (192), Expect = 6.7e-11
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 58  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVD 117
           K+YVVF+GR PGIY+SW  CH QVN+F G LHKSY TF EA  AF  +++  R +  L +
Sbjct: 307 KYYVVFLGRVPGIYSSWPACHSQVNEFSGNLHKSYKTFDEARMAFEQFLSARRLQTQLTN 366

Query: 118 QHEVCRNLPA 128
              +   + A
Sbjct: 367 NSPLVHQIHA 376

[Close]
BLAST of Spg008689 vs. NCBI nr
Match: KAF7123603.1 (hypothetical protein RHSIM_Rhsim12G0104200 [Rhododendron simsii])

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-09
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 25  LADLKVRNPSH---ATSTCHGCRRYESISAWT--MGATKFYVVFVGRNPGIYTSWVECHR 84
           LA   +R P+H        H  R Y     +T  MG+ KFYVVFVGRNPGIY  W  C  
Sbjct: 264 LAPFIIRPPNHQGKPLEILHDGRYYPWFQYYTISMGSQKFYVVFVGRNPGIYNDWPACSA 323

Query: 85  QVNQFKGALHKSYPTFQEAEYAF 103
           QVN+F G +HK Y ++ EA  A+
Sbjct: 324 QVNRFPGVVHKKYTSWDEAYNAW 346

[Close]
BLAST of Spg008689 vs. NCBI nr
Match: WP_150456826.1 (ribonuclease H family protein [Paenibacillus spiritus] >KAA9007536.1 ribonuclease H [Paenibacillus spiritus])

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-09
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 54  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGE 113
           M  TK+YVV+VGR PGIY SW EC RQ +QF GA +KSY + QEAE A+R    G  G+
Sbjct: 1   MAKTKYYVVWVGREPGIYGSWAECRRQTDQFTGAKYKSYESRQEAEEAYRGGWKGRWGQ 59

[Close]
BLAST of Spg008689 vs. NCBI nr
Match: NCC72613.1 (ribonuclease H [Sphingobacteriia bacterium])

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-09
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 53  TMGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGE 112
           T   +KFYVV+VGRNPGIY SW EC  Q+++F+GA +KS+PT + A  AFR  +      
Sbjct: 2   TKKGSKFYVVWVGRNPGIYKSWDECQLQISEFEGARYKSFPTEKAATEAFRGNMW----- 61

Query: 113 PNLVDQHEVCRNLPAEVV 131
            + + + EV  NLP E V
Sbjct: 62  -DYIGKKEVKNNLPFEEV 73

[Close]
BLAST of Spg008689 vs. NCBI nr
Match: MBQ3579380.1 (ribonuclease H family protein [Bacteroidales bacterium])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 58  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVD 117
           KFYVV+ G +PGIY SW EC  Q+  F GA +KSY T  EAE AF+H  A    +P+  D
Sbjct: 4   KFYVVWQGNHPGIYESWAECQSQIKGFAGAQYKSYKTRAEAEEAFQHPYAEAIAKPDNSD 63

Query: 118 QHEVCRNLPAEVVPFIMDSI 138
           +  +     + V P ++DSI
Sbjct: 64  ELGMTVIKASNVPPPVLDSI 83

[Close]
BLAST of Spg008689 vs. ExPASy Swiss-Prot
Match: Q9KEI9 (Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rnhA PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.1e-11
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0 

Query: 54  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEP 113
           M  +K+YVV+ GR PGIYTSW  C  QV  + GA  KSYP+ +EAE AFR    G    P
Sbjct: 1   MAKSKYYVVWNGRKPGIYTSWSACEAQVKGYTGAKFKSYPSKEEAEAAFR----GEEATP 60

Query: 114 NLVDQHEVCRNLPAEV 130
            L  +  +  +L  +V
Sbjct: 61  KLAKEEIIWESLSVDV 72

[Close]
BLAST of Spg008689 vs. ExPASy Swiss-Prot
Match: Q07762 (Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 59  FYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEA 99
           FYVV VGR  GIY++W +C  QV  F GA++KS+ T  EA
Sbjct: 156 FYVVAVGRQRGIYSTWDQCSEQVKGFSGAVYKSFRTLSEA 195

[Close]
BLAST of Spg008689 vs. ExPASy Swiss-Prot
Match: Q7TBL3 (Transactivator/viroplasmin protein OS=Cestrum yellow leaf curling virus OX=175814 GN=ORF VI PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.8e-04
Identity = 21/60 (35.00%), Postives = 32/60 (53.33%), Query Frame = 0 

Query: 44  RRYESISAWTMGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFR 103
           R   S+    +   KFYV+F     GI++ W +    +   KGA+HKSYPT + A+ A +
Sbjct: 169 REPSSLVQLPLSGKKFYVLFNTPRKGIFSDWSQIAPLITGVKGAVHKSYPTMEAAKKALK 228

[Close]
BLAST of Spg008689 vs. ExPASy Swiss-Prot
Match: Q04740 (Ribonuclease H OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RNH1 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 4.8e-04
Identity = 33/121 (27.27%), Postives = 55/121 (45.45%), Query Frame = 0 

Query: 59  FYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAE------YAFRHYVAGTRGE 118
           FY V  GR  GIY +W EC  QV+ + GA++K + ++++A+          +Y + T   
Sbjct: 7   FYAVRKGRETGIYNTWNECKNQVDGYGGAIYKKFNSYEQAKSFLGQPNTTSNYGSSTHAG 66

Query: 119 PNLVDQHEVCRNLPAEVVPFIMDSITPHELVSVLSIMADSQRQLFNLINSFMNNHPRIEN 174
             +   H   + +     P    S+T     S LS  A++     N   S  +N P IE+
Sbjct: 67  GQVSKPHTTQKRVHRRNRPLHYSSLTSSSACSSLS-SANT-----NTFYSVKSNVPNIES 121

[Close]
BLAST of Spg008689 vs. ExPASy TrEMBL
Match: A0A445EFW3 (Cauli_VI domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g009104 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 58  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVD 117
           K+YVVF+GR PGIY+SW  CH QVN+F G LHKSY TF EA  AF  +++  R +  L +
Sbjct: 307 KYYVVFLGRVPGIYSSWPACHSQVNEFSGNLHKSYKTFDEARMAFEQFLSARRLQTQLTN 366

Query: 118 QHEVCRNLPA 128
              +   + A
Sbjct: 367 NSPLVHQIHA 376

[Close]
BLAST of Spg008689 vs. ExPASy TrEMBL
Match: A0A5J5GH46 (Ribonuclease H OS=Paenibacillus spiritus OX=2496557 GN=F4V43_03330 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 54  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGE 113
           M  TK+YVV+VGR PGIY SW EC RQ +QF GA +KSY + QEAE A+R    G  G+
Sbjct: 1   MAKTKYYVVWVGREPGIYGSWAECRRQTDQFTGAKYKSYESRQEAEEAYRGGWKGRWGQ 59

[Close]
BLAST of Spg008689 vs. ExPASy TrEMBL
Match: F3ZQE7 (Ribonuclease H OS=Bacteroides coprosuis DSM 18011 OX=679937 GN=Bcop_0306 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 58  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAF 103
           K+YVV+ G NPGIYTSW +C  Q+N ++GAL+KS+PT ++AEYA+
Sbjct: 12  KYYVVWKGVNPGIYTSWTDCQLQINGYEGALYKSFPTLEKAEYAY 56

[Close]
BLAST of Spg008689 vs. ExPASy TrEMBL
Match: R6MV15 (Ribonuclease H OS=Bacteroides sp. CAG:443 OX=1262739 GN=BN659_00640 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 0 

Query: 58  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAF----RHYVAGTRGEP 117
           KFYVV+ G  PGIY+SW +C  Q+  +KGA++KS+ T +EAE+AF     HY+ G+R + 
Sbjct: 6   KFYVVWKGVEPGIYSSWTDCQLQIKNYKGAIYKSFSTREEAEHAFATPAHHYLKGSRSQA 65

Query: 118 NLVDQHEVCRN 125
           +   + ++  N
Sbjct: 66  SEPAEKKIPEN 76

[Close]
BLAST of Spg008689 vs. ExPASy TrEMBL
Match: A0A061N9J9 (Ribonuclease H OS=Geomicrobium sp. JCM 19055 OX=1460649 GN=JCM19055_4522 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 54  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFR 104
           M   K+YVV+ GR PGIYT+W EC  +V  FKGA  KSYPT++EA+ AF+
Sbjct: 1   MAKKKYYVVWKGRKPGIYTTWAECEAEVKGFKGARFKSYPTYEEAKQAFQ 50

The following BLAST results are available for this feature:
BLAST of Spg008689 vs. NCBI nr
Match NameE-valueIdentityDescription
RYR74402.16.7e-1148.57hypothetical protein Ahy_A02g009104 [Arachis hypogaea][more]
KAF7123603.14.8e-0945.78hypothetical protein RHSIM_Rhsim12G0104200 [Rhododendron simsii][more]
WP_150456826.14.8e-0957.63ribonuclease H family protein [Paenibacillus spiritus] >KAA9007536.1 ribonucleas... [more]
NCC72613.18.2e-0947.44ribonuclease H [Sphingobacteriia bacterium][more]
MBQ3579380.11.1e-0845.00ribonuclease H family protein [Bacteroidales bacterium][more]
BLAST of Spg008689 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9KEI99.1e-1144.74Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 73... [more]
Q077621.2e-0555.00Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1[more]
Q7TBL34.8e-0435.00Transactivator/viroplasmin protein OS=Cestrum yellow leaf curling virus OX=17581... [more]
Q047404.8e-0427.27Ribonuclease H OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55929... [more]
BLAST of Spg008689 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A445EFW33.2e-1148.57Cauli_VI domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g009104... [more]
A0A5J5GH462.3e-0957.63Ribonuclease H OS=Paenibacillus spiritus OX=2496557 GN=F4V43_03330 PE=3 SV=1[more]
F3ZQE71.5e-0860.00Ribonuclease H OS=Bacteroides coprosuis DSM 18011 OX=679937 GN=Bcop_0306 PE=3 SV... [more]
R6MV152.0e-0842.25Ribonuclease H OS=Bacteroides sp. CAG:443 OX=1262739 GN=BN659_00640 PE=3 SV=1[more]
A0A061N9J92.0e-0858.00Ribonuclease H OS=Geomicrobium sp. JCM 19055 OX=1460649 GN=JCM19055_4522 PE=3 SV... [more]
BLAST of Spg008689 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037056Ribonuclease H1, N-terminal domain superfamilyGENE3D3.40.970.10coord: 55..104
e-value: 1.6E-18
score: 68.6
IPR011320Ribonuclease H1, N-terminalPFAMPF01693Cauli_VIcoord: 58..99
e-value: 1.2E-17
score: 63.9
IPR009027Ribosomal protein L9/RNase H1, N-terminalSUPERFAMILY55658L9 N-domain-likecoord: 58..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008689.1Spg008689.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0005737 cytoplasm
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity