Spg008679 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008679
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	high mobility group B protein 7-like
Location	scaffold10: 32699142 .. 32701494 (-)
RNA-Seq Expression	Spg008679
Synteny	Spg008679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTTTGCCATTCGCTTCAATTCTTCTGCATTTTCGAAGTCACCGATTCAGCGGCGGAGAAGAGCAAATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCCGACGCCGCCGCCACCACTGGTCCTTCCCTCGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGGTGCGTTAATTTTTTCCAGTTTCTTTATGTATGTTATTGTTGAGTCACATTGACTGGTTGAGAGGTAAACAGGACGTAGTCACATTGCTCGATCCTTGTAACTTTGTGTTTTCTTTTTTCTTTGATTCCTATGGTGGTTTCATCGGTGTGTTTGTGCTGTACTTTCCTAACACTCCATCTCTTCGAATATTTTCGGAGCAAATCGTGGTTTCTGGAGCTATTTTTGTTTTTGGAGCAAATTGTGGTCCGATTTCGTTGAGAGTTGAATGAAACGTTCATTTTCTTTATGAATGTTCTTGTTGAGTTACATTGACTGGTTTAGGGCTAGTGAGGATGTAGGACAGTTGCCGAACCTGTTTAACTTTGCATGATTTTACTACCTTTGTTTCTATGTTGGTTTCATTGGTGTTTTCGTATTGTACATTCCTGACACTCCATTTCTTAGATTATTTTCGGAACAAACTGTGGTTTCCGGAGTTTGTGTTTATGCATTGATAATTTTGATTTTCAGTTCGCCTGTTACTGCGATTTCGATTCCGAGTTGAATGAAATGTTCATTTTCTTGTAATCGGAGTCACAGTAGCAGCAACCTTTGGTTTCTTGATTATGGAAGAACTTGATTGTCTCATATTTGAATGGTTAATTTTTGGCTGGTACAGTGACGAGTGTGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGTAGCCTCGACGCCAAAATTAGAATGAATTTGGGTATATTATCTGTGTGGATTCGTGAATACTTTTTTCGATTGGATTCTTTTCTGATTCGGAACTCTTACATTTCTGTTTTCTTTCAGAGGCTCAGACTGTAGAGAAGCAAACTCAAGCTAAAAAGCCAGTCGAAAGGTGTCTTATTCGCTACCCTGATCCTCTCTCTGTCTCTGCACGTTTTCCTTTATCCATACCTAGTTGAGGTGATACTTTTAGTTGTATTAACTTGATTGTTTCTTTGTACAGGAAAAGATCAGCACCATCCGAACCTAAGTCTAAAAGATCCAAAACGGAGAAGAGGGGGAAGAAAGAAAAAGATCCAAATGCACCCAAACGCCCTCCTACAGCCTTCTTTATCTTCATGTATGCAAATTCTTCTGCTCCCAAGCGTTGGATTGATCAAATTACTGCATCGGTAGTTTCTAATTACTCAAAATCGTTTACTGAAATTGCTTACTGTAATACTTCAGGGACGACTTCAGGAAATCATACAAAGAAGCAAATCCAGATTCCAAAGGCGTTAAGGAGGTTAGCATAGATCAACATACATTTCTTAGTTTCCAGTGAAAATTGTATGATGACCAGAAATATTGTACGCTGTCTCCTGATTGAATCTCTTAATCTTTTTAGGTTGCAAAGGAGGGTGGTGAGAAATGGAAGTCAATGACTGATGAAGTGAGTTAGATTACTTACCATTTGAAAACATGTGTTTGTTTTGTGAATTGTATAATCTAAACCTTACAATGACTAACAGGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAAGCTCTGGAAAGTCAAAATGCTGAGAATGAAGATGTAAGATTTGAGTTATGAACTGTTGAAACTTTTTGTTTAACTGTTTAAATGCTAATGTGGGATCTTTGATCAGGATGAGAAAGAGACAGATGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGATGAAGAGTAAAGCATTCCATGTTAGGCTTCTGTAATGGCAAATAGCTAGAAACAGCCTCTTCACTGCCTGGTTTCTGTTGTAAATTCAGAGTCTAAATTAGTCAAACTGCTGTTTGATTCTATGGTTGCGTTTGAAGCTATATAGTACAAATGCCTGATTTTTGTGTTCTTTTTTTTGGGTCTGTTTATCTTCATGAATATGTAGTTCTAACAAAATTCAATCTAAATTTGAACCCATTTTAGCCTACCTAATTAACTGGCTCTTGAGTGTTGGAAATGGAGAAAAATTAAGCATTTGAAGAAGTGAGAATTACAGTGTTTAATGATGGTTTTTGTTAAACTTTTTGCATTTTTATGTCAGTTTTAAGACCATATACATTTGCCATTTGTTTGAGTACCATTATTATATTTTGGTGCATGTTTGTGGAATGTGCCACTGTACTTCATATTACTCGT

mRNA sequence

ATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCCGACGCCGCCGCCACCACTGGTCCTTCCCTCGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGTGACGAGTGTGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGTAGCCTCGACGCCAAAATTAGAATGAATTTGGAGGCTCAGACTGTAGAGAAGCAAACTCAAGCTAAAAAGCCAGTCGAAAGGAAAAGATCAGCACCATCCGAACCTAAGTCTAAAAGATCCAAAACGGAGAAGAGGGGGAAGAAAGAAAAAGATCCAAATGCACCCAAACGCCCTCCTACAGCCTTCTTTATCTTCATGGACGACTTCAGGAAATCATACAAAGAAGCAAATCCAGATTCCAAAGGCGTTAAGGAGGTTGCAAAGGAGGGTGGTGAGAAATGGAAGTCAATGACTGATGAAGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAAGCTCTGGAAAGTCAAAATGCTGAGAATGAAGATGATGAGAAAGAGACAGATGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGATGAAGAGTAA

Coding sequence (CDS)

ATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCCGACGCCGCCGCCACCACTGGTCCTTCCCTCGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGTGACGAGTGTGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGTAGCCTCGACGCCAAAATTAGAATGAATTTGGAGGCTCAGACTGTAGAGAAGCAAACTCAAGCTAAAAAGCCAGTCGAAAGGAAAAGATCAGCACCATCCGAACCTAAGTCTAAAAGATCCAAAACGGAGAAGAGGGGGAAGAAAGAAAAAGATCCAAATGCACCCAAACGCCCTCCTACAGCCTTCTTTATCTTCATGGACGACTTCAGGAAATCATACAAAGAAGCAAATCCAGATTCCAAAGGCGTTAAGGAGGTTGCAAAGGAGGGTGGTGAGAAATGGAAGTCAATGACTGATGAAGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAAGCTCTGGAAAGTCAAAATGCTGAGAATGAAGATGATGAGAAAGAGACAGATGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGATGAAGAGTAA

Protein sequence

MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFFIFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNAENEDDEKETDEVAEKEVEEITDEE

Homology

[Close]

BLAST of Spg008679 vs. NCBI nr
Match: XP_023550365.1 (high mobility group B protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.9 bits (873), Expect = 7.7e-90
Identity = 191/207 (92.27%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAATTGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
           AKIR NLEAQTVEKQTQAKKP E+KRSAPSEPK+K+S+TEKRGKK+KDPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ES 180
           +FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 QNAENEDDEKETDEVAEKEVEEITDEE 207
           +NAENE+DEKET+EVAEKEVEE+TDEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Spg008679 vs. NCBI nr
Match: XP_022938415.1 (high mobility group B protein 7-like [Cucurbita moschata])

HSP 1 Score: 339.3 bits (869), Expect = 2.2e-89
Identity = 190/207 (91.79%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA+TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
           AKIR NLEAQTVEKQTQAKKP E+KRSAPSEPK+K+S+TEKRGKK+KDPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ES 180
           +FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 QNAENEDDEKETDEVAEKEVEEITDEE 207
           +NAENE+DEKET+EVAEKEVEE+TDEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Spg008679 vs. NCBI nr
Match: KAG6579089.1 (High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 338.6 bits (867), Expect = 3.8e-89
Identity = 190/207 (91.79%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAATTGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
           AKIR NLEAQTVEKQTQAKKP E+KRSAPSEPK+K+ +TEKRGKK+KDPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKFRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ES 180
           +FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 QNAENEDDEKETDEVAEKEVEEITDEE 207
           +NAENE+DEKET+EVAEKEVEE+TDEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Spg008679 vs. NCBI nr
Match: XP_022992985.1 (high mobility group B protein 7-like [Cucurbita maxima])

HSP 1 Score: 337.4 bits (864), Expect = 8.5e-89
Identity = 189/207 (91.30%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
           AKIR NLEAQTV+KQTQAKKP E+KRSAPSEPK+K+S+TEKRGKK+KDPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ES 180
           +FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 QNAENEDDEKETDEVAEKEVEEITDEE 207
           +NAENE+DEKET+EVAEKEVEE+TDEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Spg008679 vs. NCBI nr
Match: KAG7016615.1 (High mobility group B protein 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.3 bits (856), Expect = 7.2e-88
Identity = 190/207 (91.79%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAATTGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
           AKIR NLEAQTVEKQTQAKKP E+KRSAPSEPK+K+S+TEKRGKK+KDPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ES 180
           +FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 QNAENEDDEKETDEVAEKEVEEITDEE 207
           +NAENE+DEKET+EVAE EVEE+TDEE
Sbjct: 181 RNAENEEDEKETEEVAE-EVEEVTDEE 205

[Close]

BLAST of Spg008679 vs. ExPASy Swiss-Prot
Match: Q8LDF9 (High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.3e-43
Identity = 117/203 (57.64%), Postives = 146/203 (71.92%), Query Frame = 0


Query: 8   KSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNL 67
           K RKRVE   A+ ++ T  +L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+NL
Sbjct: 12  KQRKRVE---AETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNL 71

Query: 68  EAQTVEKQTQA-KKPVERKRSAPSEPKSKR-SKTEKRGKKEKDPNAPKRPPTAFFIFMDD 127
           EAQ VE Q +A KKP E+K++    PK KR  KT    K     N PKRP TAFFIFM D
Sbjct: 72  EAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSD 131

Query: 128 FRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNA--E 187
           FRK++K  +  S   K+ AK GGEKWKS+T+EEKK Y DKAAELKAEY K+LES +A  E
Sbjct: 132 FRKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEE 191

Query: 188 NEDDEKETDEVAEKEVEEITDEE 207
            ED+EK++D+V + E +++ D++
Sbjct: 192 EEDEEKQSDDVDDAEEKQVDDDD 210

[Close]

BLAST of Spg008679 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 72  VEKQTQAKKPVE----RKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFFIFMDDFR 131
           V+   +A KPV+     KR AP+E  +KR +T K  K +KDPN PKR P+AFF+F++DFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAEKPTKR-ETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 132 KSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNAENEDD 191
            ++K+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 192 EKETDEVAEKEVEEITDEE 207
             E    +EK   EI DE+
Sbjct: 130 SDE----SEKSRSEINDED 143

[Close]

BLAST of Spg008679 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-16
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 86  RSAPSEPKSKRSKTEKRGK----KEKDPNAPKRPPTAFFIFMDDFRKSYKEANPDSKGVK 145
           +S      +K S T+K  K      KDPN PKRP +AFF+FM+DFR +YKE +P +K V 
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 146 EVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNAENEDDEKETDEVAEKEVEE 205
            V K GGEKWKS++D EK PY  KA + K EYEK +++ N + E+  KE DE ++K V E
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKE-DEESDKSVSE 124

Query: 206 ITDEE 207
           + DE+
Sbjct: 125 VNDED 128

[Close]

BLAST of Spg008679 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-15
Identity = 60/135 (44.44%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 74  KQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFFIFMDDFRKSYKEA 133
           K+ + K  V +K +A     +K  K   +GK+ KDPN PKRPP+AFF+FM DFR+ YK+ 
Sbjct: 11  KKAETKLAVNKKGAA----ATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKD 70

Query: 134 NPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQN--AENEDDEKET 193
           +P++K V  V K  GE+WKS+++EEK PY D+A + K EYE  L++ N   E +DDE+ +
Sbjct: 71  HPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEGKDDEEGS 130

Query: 194 DEVAEKEVEEITDEE 207
           D+   +  +E  DEE
Sbjct: 131 DKSKSEVNDEDEDEE 141

[Close]

BLAST of Spg008679 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 0


Query: 78  AKKPVERKRSAPSEPKSKRSKTEKRGK-KEKDPNAPKRPPTAFFIFMDDFRKSYKEANPD 137
           AK   E + S  S  K K +K   RGK   KDPN PKRP +AFF+FM+DFR+++K+ NP 
Sbjct: 4   AKSKTETRSSKLSVTK-KPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 63

Query: 138 SKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNAENEDDEKETDEVAE 197
           +K V  V K  G+KWKS++D EK PY  KA + K EYEK +++ N + E+  KE DE ++
Sbjct: 64  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKE-DEESD 123

Query: 198 KEVEEITDEE 207
           K V E+ DE+
Sbjct: 124 KSVSEVNDED 131

[Close]

BLAST of Spg008679 vs. ExPASy TrEMBL
Match: A0A6J1FJR0 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111444667 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 190/207 (91.79%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA+TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
           AKIR NLEAQTVEKQTQAKKP E+KRSAPSEPK+K+S+TEKRGKK+KDPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ES 180
           +FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 QNAENEDDEKETDEVAEKEVEEITDEE 207
           +NAENE+DEKET+EVAEKEVEE+TDEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Spg008679 vs. ExPASy TrEMBL
Match: A0A6J1JX92 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.1e-89
Identity = 189/207 (91.30%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
           AKIR NLEAQTV+KQTQAKKP E+KRSAPSEPK+K+S+TEKRGKK+KDPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ES 180
           +FMDDFRKSYKEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL ES
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 QNAENEDDEKETDEVAEKEVEEITDEE 207
           +NAENE+DEKET+EVAEKEVEE+TDEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Spg008679 vs. ExPASy TrEMBL
Match: A0A6J1CKD5 (high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.6e-86
Identity = 182/206 (88.35%), Postives = 193/206 (93.69%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPADAA  TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD
Sbjct: 19  MAGGGSSKSRKRVEATPADAAVATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 78

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
           AKIRMNLE+QTVEKQTQAKK  ERKRSA SEPK+K+SK EKRGKK++DPNAPKRPPTAFF
Sbjct: 79  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 138

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQ 180
           IFMDDFRKSYKE +PDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE+ 
Sbjct: 139 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 198

Query: 181 NAENEDDEKETDEVAEKEVEEITDEE 207
             ENEDDEKE +E AEKEVEEI+DEE
Sbjct: 199 KNENEDDEKEAEEAAEKEVEEISDEE 224

[Close]

BLAST of Spg008679 vs. ExPASy TrEMBL
Match: A0A6J1JNZ6 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 179/205 (87.32%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MA   SS SRKRV+A P+D AATTGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 43  MAVRRSSSSRKRVDAAPSD-AATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 102

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
            KIRMNLEAQTVEKQTQAKKP ERKRSAPSEPK+ +SKT+KR KK KDPNAPKRPPTAFF
Sbjct: 103 TKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKNKDPNAPKRPPTAFF 162

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQ 180
           IFMDD+RKS+KEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEY+KALE+Q
Sbjct: 163 IFMDDYRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYKKALETQ 222

Query: 181 NAENEDDEKETDEVAEKEVEEITDE 206
           NAENEDDEK+T+EVAE+E EE+TDE
Sbjct: 223 NAENEDDEKDTEEVAEREAEEVTDE 246

[Close]

BLAST of Spg008679 vs. ExPASy TrEMBL
Match: A0A6J1GYR9 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111458705 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.3e-82
Identity = 176/205 (85.85%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 1   MAGGGSSKSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MA   SS SRKRV+A P+D AATTGPSLVRAKDGSAFARC ECGKSVP ALISMHSCSLD
Sbjct: 1   MAVRRSSSSRKRVDAAPSD-AATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLEAQTVEKQTQAKKPVERKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFF 120
            KIRMNLEAQTVEKQTQAKKP ERKRSAPSEPK+ +SKT+KR KK+KDPNAPKRPPTAFF
Sbjct: 61  TKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQ 180
           IFM+DFRKS+KEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE++
Sbjct: 121 IFMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETR 180

Query: 181 NAENEDDEKETDEVAEKEVEEITDE 206
           N ENEDDEK+T+EV EKE E++TDE
Sbjct: 181 NTENEDDEKDTEEVTEKEAEKVTDE 204

[Close]

BLAST of Spg008679 vs. TAIR 10
Match: AT5G23420.1 (high-mobility group box 6 )

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-44
Identity = 117/203 (57.64%), Postives = 146/203 (71.92%), Query Frame = 0


Query: 8   KSRKRVEATPADAAATTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNL 67
           K RKRVE   A+ ++ T  +L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+NL
Sbjct: 12  KQRKRVE---AETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNL 71

Query: 68  EAQTVEKQTQA-KKPVERKRSAPSEPKSKR-SKTEKRGKKEKDPNAPKRPPTAFFIFMDD 127
           EAQ VE Q +A KKP E+K++    PK KR  KT    K     N PKRP TAFFIFM D
Sbjct: 72  EAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSD 131

Query: 128 FRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNA--E 187
           FRK++K  +  S   K+ AK GGEKWKS+T+EEKK Y DKAAELKAEY K+LES +A  E
Sbjct: 132 FRKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEE 191

Query: 188 NEDDEKETDEVAEKEVEEITDEE 207
            ED+EK++D+V + E +++ D++
Sbjct: 192 EEDEEKQSDDVDDAEEKQVDDDD 210

[Close]

BLAST of Spg008679 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-20
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 72  VEKQTQAKKPVE----RKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFFIFMDDFR 131
           V+   +A KPV+     KR AP+E  +KR +T K  K +KDPN PKR P+AFF+F++DFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAEKPTKR-ETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 132 KSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNAENEDD 191
            ++K+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 192 EKETDEVAEKEVEEITDEE 207
             E    +EK   EI DE+
Sbjct: 130 SDE----SEKSRSEINDED 143

[Close]

BLAST of Spg008679 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-20
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 72  VEKQTQAKKPVE----RKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFFIFMDDFR 131
           V+   +A KPV+     KR AP+E  +KR +T K  K +KDPN PKR P+AFF+F++DFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAEKPTKR-ETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 132 KSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNAENEDD 191
            ++K+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 192 EKETDEVAEKEVEEITDEE 207
             E    +EK   EI DE+
Sbjct: 130 SDE----SEKSRSEINDED 143

[Close]

BLAST of Spg008679 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-20
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 72  VEKQTQAKKPVE----RKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFFIFMDDFR 131
           V+   +A KPV+     KR AP+E  +KR +T K  K +KDPN PKR P+AFF+F++DFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAEKPTKR-ETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 132 KSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNAENEDD 191
            ++K+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 192 EKETDEVAEKEVEEITDEE 207
             E    +EK   EI DE+
Sbjct: 130 SDE----SEKSRSEINDED 143

[Close]

BLAST of Spg008679 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-20
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 72  VEKQTQAKKPVE----RKRSAPSEPKSKRSKTEKRGKKEKDPNAPKRPPTAFFIFMDDFR 131
           V+   +A KPV+     KR AP+E  +KR +T K  K +KDPN PKR P+AFF+F++DFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAEKPTKR-ETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 132 KSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESQNAENEDD 191
            ++K+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 192 EKETDEVAEKEVEEITDEE 207
             E    +EK   EI DE+
Sbjct: 130 SDE----SEKSRSEINDED 143

The following BLAST results are available for this feature:

BLAST of Spg008679 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550365.1	7.7e-90	92.27	high mobility group B protein 7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938415.1	2.2e-89	91.79	high mobility group B protein 7-like [Cucurbita moschata]	[more]
KAG6579089.1	3.8e-89	91.79	High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022992985.1	8.5e-89	91.30	high mobility group B protein 7-like [Cucurbita maxima]	[more]
KAG7016615.1	7.2e-88	91.79	High mobility group B protein 7 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Spg008679 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDF9	3.3e-43	57.64	High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV...	[more]
O49595	1.3e-18	47.48	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P93047	4.5e-16	48.00	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40620	1.0e-15	44.44	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
O49596	1.7e-15	47.69	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of Spg008679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJR0	1.1e-89	91.79	high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114446...	[more]
A0A6J1JX92	4.1e-89	91.30	high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146...	[more]
A0A6J1CKD5	5.6e-86	88.35	high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 P...	[more]
A0A6J1JNZ6	2.3e-84	87.32	high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589...	[more]
A0A6J1GYR9	1.3e-82	85.85	high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]

BLAST of Spg008679 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23420.1	2.3e-44	57.64	high-mobility group box 6	[more]
AT3G51880.1	9.0e-20	47.48	high mobility group B1	[more]
AT3G51880.2	9.0e-20	47.48	high mobility group B1	[more]
AT3G51880.3	9.0e-20	47.48	high mobility group B1	[more]
AT3G51880.4	9.0e-20	47.48	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 163..197
None	No IPR available	PRINTS	PR00886	HIGHMOBLTY12	coord: 165..185 score: 38.45 coord: 146..165 score: 36.67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..119
None	No IPR available	PANTHER	PTHR47658:SF1	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 6..201
None	No IPR available	PANTHER	PTHR47658	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 6..201
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 112..178 e-value: 2.07571E-20 score: 79.2089
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 111..182 e-value: 7.8E-25 score: 98.5
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 112..177 e-value: 8.4E-22 score: 77.4
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 112..181 score: 19.480633
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 95..197 e-value: 8.2E-27 score: 95.4
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 100..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008679.1	Spg008679.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding