Spg008672 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008672
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U6 snRNA-associated Sm-like protein LSm3
Location	scaffold10: 36651404 .. 36653411 (-)
RNA-Seq Expression	Spg008672
Synteny	Spg008672

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAACGCATTTACGTCAAGCTCCGCTCTGACCGTGAACTCCGTGGCAAACTCCATGTACAGTTCCCATCCCCCTCGATTGATTCTTCTTTTTCCCTTTCTCTTTTCGGTTTCTTTTCTCCAATGGTGAATCGATTGCCCCCACTGGCCTGTTTTTCTGTATTTTTTTTCGATCAAGTGAATGACTTGGGGAATTAGGGTTTTGCAATTGTTCGAGTTTCTTGAAGGCCTTCACTTGAATTTTGCTTACATTCATTTCGGTGAAAAAGGCGACAGCTTAGTTTCTTCTGATTGGATATTACCTCTTATACTCTTGAGTTTTTGCGTTTGGGCGGTAGGGGCAAGGGGTGGGTTTCAAACTTCTCTATTCTTGGGGATGGAATTGCATAAATTCGGAAGAATTGCCCTAATGGTCAGAAGTACCAAAAACCAAAGTAGACGCTTTACACAGAGATCTCCGATCTTACCCATCAGAAATTTAGTAGAAAGACGATTATTTTAGTATGATCTGTTTCTTATTATCTATGCGGATGTACCATTATGAATGCGTTCCTTCCATTATCCACAAGATGTTGATTATGATTAATAGCTGACCTGTGGACTCTTGTATTGCATTTTTAGTTTTCAGATGCTACTGCCAATGCAAAATTTTCAAGTTTTGATTAAAACGTTTCTTCATTTCTATGATCGATTACTGAGATTTGCCTTTCCTGGAGTTTGACTGCTCTCTGTTGCTGGCTATCTTGCTTTGCAGGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGGTATGCTCATTTTCTTGCCCTTTTCCCCGCTTTTTTTTGATAGGATAAGAGAACTATTCATACTAAAGAAAGTTTGCAAAAAGGAAAGGAAAAAGATGAGTCTTGCATTAGGATTGTTTGCAAGCTTGGTATTTAACTATAACCAATCAGCTCCATGCTATTAAACAAATACGTACCACGCACAGGCATCCATGCCATAAACACTTAATTTACTACCATGGCTCAGAAAAACCTACCATGTGAAATATAGTTTTGAATACTCTCAAGTTGGTCTCATTTTCAAGTAAATCAGGTGGGTTTTCAAAAGTGAACACTGGATTACAAGTGAAGTATTGCGTTTTTAAAGGAAATAGATACCTATGCTCAAAAGTTTGAAGTTTCAAACCGAAGGAAAGAAAGAAAAGAATATCTTGAGTCCTCAAGCTGGTTCATTGTCTATCCATACTCGTTATGTTAACTCGAGTATTGCTTTTGTGTGTATTTCGATTGAGATTCCATATATTTATCTATTTTCTTTTCCAGACATCCAGGCGTACGGTCCCATTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCGCTGAGGACTGTTTGAGTTTCAGATTGGAAGTTTGCTTGTGTGCATCCTTAATGGGTTCTTATTCATCTTCTCTACTGGATTGACGACTGGCACCGAAAAGTTTGAGGATCCGACATCCTGAGAACTATCAAGTACTCGCCCCCTTTCATAGGCTAGCCTTCTTATCCTTTAGTTGTTATGCATGTTGGATTCTGTTACATAAAAGAGATACTTCTACAACTAGTTTAGTCGTTCTGATATATCTTAGCCTTAACTTTAGTTTTTGACATTTTAATTGGCTGCACAAATTGAATGTTTTCAGATTTTGTATGCAAGGTCAAGTAAGGGCAACTTAGCCACAGCCACAGAGTTGTTATTAATCTTTGCATCTTTTCTTTTTAAATATTTTTCGACTCGCCATTACCGAGAAGCTTGTTTTCATGTGTTGGATTGTTCAACCTGTTTGTTTTTTAAGTAGATGAAGAAGTTTGATGTATTTGTGAATGCGTATCATGAAGACATGAATTGATC

mRNA sequence

ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAACGCATTTACGTCAAGCTCCGCTCTGACCGTGAACTCCGTGGCAAACTCCATGTACAGTTCCCATCCCCCTCGATTGATTCTTCTTTTTCCCTTTCTCTTTTCGGTTTCTTTTCTCCAATGGTGAATCGATTGCCCCCACTGGCCTGTTTTTCTGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGACATCCAGGCGTACGGTCCCATTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCGCTGAGGACTGTTTGA

Coding sequence (CDS)

ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCATTGGATCTCATAAGGTTGAGTCTTGACGAACGCATTTACGTCAAGCTCCGCTCTGACCGTGAACTCCGTGGCAAACTCCATGTACAGTTCCCATCCCCCTCGATTGATTCTTCTTTTTCCCTTTCTCTTTTCGGTTTCTTTTCTCCAATGGTGAATCGATTGCCCCCACTGGCCTGTTTTTCTGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATTGTTCGGACATCCAGGCGTACGGTCCCATTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCGCTGAGGACTGTTTGA

Protein sequence

MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFSPMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV

Homology

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BLAST of Spg008672 vs. NCBI nr
Match: XP_042464523.1 (sm-like protein LSM3A isoform X1 [Zingiber officinale])

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-41
Identity = 100/138 (72.46%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------VQFPSPSIDSSFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH         +        + +
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHGTEKKKIKGKKKRTQRRRNLN 60

Query: 61  LSLFGFFSPMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVP 120
           LS  G F P ++ L       AYDQHLNMILGDVEEI+TTVEIDDETYEEIVRT+RRTVP
Sbjct: 61  LSAPGAFRPPLSLLESRRRTQAYDQHLNMILGDVEEILTTVEIDDETYEEIVRTTRRTVP 120

Query: 121 FLFVRGDGVILVSPPLRT 131
           FLFVRGDGVILVSPPLRT
Sbjct: 121 FLFVRGDGVILVSPPLRT 138

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BLAST of Spg008672 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_038886358.1 sm-like protein LSM3A [Benincasa hispida] >KAG6578889.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032866.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6602182.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.4 bits (433), Expect = 5.2e-39
Identity = 97/131 (74.05%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG
Sbjct: 61  -------------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 97

Query: 121 VILVSPPLRTV 132
           VILVSPPLRTV
Sbjct: 121 VILVSPPLRTV 97

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BLAST of Spg008672 vs. NCBI nr
Match: KAG6517371.1 (hypothetical protein ZIOFF_020756 [Zingiber officinale])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 96/133 (72.18%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFG--- 60
           MA+EEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH+          + +   G   
Sbjct: 40  MASEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHISIRVWESYGGYHVVNHGGNV 99

Query: 61  FFSPMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVR 120
           F   +++ L  L    AYDQHLNMILGDVEEI+TTVEIDDETYEEIVRT++RTVPFLFVR
Sbjct: 100 FPRGLLSNL--LWLKWAYDQHLNMILGDVEEIITTVEIDDETYEEIVRTTKRTVPFLFVR 159

Query: 121 GDGVILVSPPLRT 131
           GDGVILVSPPLRT
Sbjct: 160 GDGVILVSPPLRT 170

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BLAST of Spg008672 vs. NCBI nr
Match: XP_008441520.1 (PREDICTED: sm-like protein LSM3B [Cucumis melo] >KAA0054950.1 sm-like protein LSM3A [Cucumis melo var. makuwa] >TYK22739.1 sm-like protein LSM3A [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-38
Identity = 96/131 (73.28%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        AYDQHLNMILGDVEE VTTVEIDDETYEEIVRTSRRTVPFLFVRGDG
Sbjct: 61  -------------AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 97

Query: 121 VILVSPPLRTV 132
           VILVSPPLRTV
Sbjct: 121 VILVSPPLRTV 97

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BLAST of Spg008672 vs. NCBI nr
Match: XP_016719620.1 (sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like protein LSM3A [Gossypium arboreum] >KAB2093840.1 hypothetical protein ES319_A02G119900v1 [Gossypium barbadense] >TYH28285.1 hypothetical protein ES288_A02G132100v1 [Gossypium darwinii] >TYI39998.1 hypothetical protein ES332_A02G133700v1 [Gossypium tomentosum] >TYJ46483.1 hypothetical protein E1A91_A02G124400v1 [Gossypium mustelinum] >KAG4211549.1 hypothetical protein ERO13_A02G112705v2 [Gossypium hirsutum])

HSP 1 Score: 167.9 bits (424), Expect = 5.7e-38
Identity = 94/130 (72.31%), Postives = 96/130 (73.85%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRT+RRTVPFLFVRGDG
Sbjct: 61  -------------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDG 96

Query: 121 VILVSPPLRT 131
           VILVSPPLRT
Sbjct: 121 VILVSPPLRT 96

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BLAST of Spg008672 vs. ExPASy Swiss-Prot
Match: Q9LMN4 (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-37
Identity = 83/130 (63.85%), Postives = 95/130 (73.08%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLH                     
Sbjct: 1   MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        A+DQHLNMILGDVEE++TT+EIDDETYEEIVRT++RTVPFLFVRGDG
Sbjct: 61  -------------AFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDG 96

Query: 121 VILVSPPLRT 131
           VILVSPPLRT
Sbjct: 121 VILVSPPLRT 96

[Close]

BLAST of Spg008672 vs. ExPASy Swiss-Prot
Match: Q9C6K5 (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-37
Identity = 85/130 (65.38%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        A+DQHLNMILGDVEE +TTVEIDDETYEEIVRT++RT+ FLFVRGDG
Sbjct: 61  -------------AFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDG 96

Query: 121 VILVSPPLRT 131
           VILVSPPLRT
Sbjct: 121 VILVSPPLRT 96

[Close]

BLAST of Spg008672 vs. ExPASy Swiss-Prot
Match: Q32PE9 (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 5.4e-31
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFSPMVNRL 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LH                           
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH--------------------------- 71

Query: 67  PPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 126
                  AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+P
Sbjct: 72  -------AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 100

Query: 127 PLR 130
           PLR
Sbjct: 132 PLR 100

[Close]

BLAST of Spg008672 vs. ExPASy Swiss-Prot
Match: P62310 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 5.4e-31
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFSPMVNRL 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LH                           
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH--------------------------- 71

Query: 67  PPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 126
                  AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+P
Sbjct: 72  -------AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 100

Query: 127 PLR 130
           PLR
Sbjct: 132 PLR 100

[Close]

BLAST of Spg008672 vs. ExPASy Swiss-Prot
Match: P62311 (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 5.4e-31
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFSPMVNRL 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LH                           
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH--------------------------- 71

Query: 67  PPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 126
                  AYDQHLNMILGDVEE VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+P
Sbjct: 72  -------AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 100

Query: 127 PLR 130
           PLR
Sbjct: 132 PLR 100

[Close]

BLAST of Spg008672 vs. ExPASy TrEMBL
Match: A0A6J1JZX1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC111489789 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 97/131 (74.05%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG
Sbjct: 61  -------------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 97

Query: 121 VILVSPPLRTV 132
           VILVSPPLRTV
Sbjct: 121 VILVSPPLRTV 97

[Close]

BLAST of Spg008672 vs. ExPASy TrEMBL
Match: A0A6J1FGZ1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111445386 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 97/131 (74.05%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG
Sbjct: 61  -------------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 97

Query: 121 VILVSPPLRTV 132
           VILVSPPLRTV
Sbjct: 121 VILVSPPLRTV 97

[Close]

BLAST of Spg008672 vs. ExPASy TrEMBL
Match: A0A6J1BV62 (U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC111006032 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 97/131 (74.05%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG
Sbjct: 61  -------------AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 97

Query: 121 VILVSPPLRTV 132
           VILVSPPLRTV
Sbjct: 121 VILVSPPLRTV 97

[Close]

BLAST of Spg008672 vs. ExPASy TrEMBL
Match: A0A5D3DHH3 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis melo var. makuwa OX=1194695 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 96/131 (73.28%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        AYDQHLNMILGDVEE VTTVEIDDETYEEIVRTSRRTVPFLFVRGDG
Sbjct: 61  -------------AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 97

Query: 121 VILVSPPLRTV 132
           VILVSPPLRTV
Sbjct: 121 VILVSPPLRTV 97

[Close]

BLAST of Spg008672 vs. ExPASy TrEMBL
Match: A0A0A0K8S0 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis sativus OX=3659 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 96/131 (73.28%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        AYDQHLNMILGDVEE VTTVEIDDETYEEIVRTSRRTVPFLFVRGDG
Sbjct: 61  -------------AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 97

Query: 121 VILVSPPLRTV 132
           VILVSPPLRTV
Sbjct: 121 VILVSPPLRTV 97

[Close]

BLAST of Spg008672 vs. TAIR 10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-38
Identity = 83/130 (63.85%), Postives = 95/130 (73.08%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLH                     
Sbjct: 1   MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        A+DQHLNMILGDVEE++TT+EIDDETYEEIVRT++RTVPFLFVRGDG
Sbjct: 61  -------------AFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDG 96

Query: 121 VILVSPPLRT 131
           VILVSPPLRT
Sbjct: 121 VILVSPPLRT 96

[Close]

BLAST of Spg008672 vs. TAIR 10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 154.5 bits (389), Expect = 6.1e-38
Identity = 85/130 (65.38%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVQFPSPSIDSSFSLSLFGFFS 60
           M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLH                     
Sbjct: 1   MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 60

Query: 61  PMVNRLPPLACFSAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDG 120
                        A+DQHLNMILGDVEE +TTVEIDDETYEEIVRT++RT+ FLFVRGDG
Sbjct: 61  -------------AFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDG 96

Query: 121 VILVSPPLRT 131
           VILVSPPLRT
Sbjct: 121 VILVSPPLRT 96

The following BLAST results are available for this feature:

BLAST of Spg008672 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042464523.1	7.2e-41	72.46	sm-like protein LSM3A isoform X1 [Zingiber officinale]	[more]
XP_022133461.1	5.2e-39	74.05	sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3...	[more]
KAG6517371.1	1.1e-38	72.18	hypothetical protein ZIOFF_020756 [Zingiber officinale]	[more]
XP_008441520.1	2.6e-38	73.28	PREDICTED: sm-like protein LSM3B [Cucumis melo] >KAA0054950.1 sm-like protein LS...	[more]
XP_016719620.1	5.7e-38	72.31	sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like pr...	[more]

BLAST of Spg008672 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMN4	2.3e-37	63.85	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1	[more]
Q9C6K5	8.6e-37	65.38	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1	[more]
Q32PE9	5.4e-31	57.72	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3	[more]
P62310	5.4e-31	57.72	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV...	[more]
P62311	5.4e-31	57.72	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S...	[more]

BLAST of Spg008672 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZX1	2.5e-39	74.05	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FGZ1	2.5e-39	74.05	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1BV62	2.5e-39	74.05	U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3DHH3	1.2e-38	73.28	U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0K8S0	1.2e-38	73.28	U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis sativus OX=3659 GN=LSM3 PE=3...	[more]

BLAST of Spg008672 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21190.1	1.6e-38	63.85	Small nuclear ribonucleoprotein family protein	[more]
AT1G76860.1	6.1e-38	65.38	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 14..126 e-value: 6.0E-5 score: 32.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 72..126 e-value: 1.7E-8 score: 34.1
None	No IPR available	GENE3D	2.30.30.100		coord: 2..128 e-value: 3.0E-26 score: 93.0
None	No IPR available	PANTHER	PTHR13110:SF13	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 73..131 coord: 1..40
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 73..131 coord: 1..40
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 11..126 e-value: 6.97223E-49 score: 149.298
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 71..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008672.1	Spg008672.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0033962	P-body assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding