Spg008665 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008665
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold10: 33526824 .. 33529750 (-)
RNA-Seq ExpressionSpg008665
SyntenySpg008665
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTTCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAGATTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGTTTTTTCTTGGTGTAGCTGTCGTCATATTAGGTAGTCTGATGTAGTATGGACATTTATTTTCAGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAGTTCTCGGGATCTTGCACTCGGGTTATTCCTGGGAATTTCGATCCCCGACTCATGTACGACACCGAATCAGGCAACTGAACTTCTTCCGTCTTATTCACGAGGATGATTTAGCTTGTCGTGAAAATACACGCATGGATCGACGAACATTCACGATCCTGTGTACCCTTTTACGGACCACTGGTAGACTACAAGCCACTAGCTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATTGTTGCACACGACGTTAAGAATCGTGTGATCCGTCGCCAATTTGTGCGTTCGGGAGAGACCGTATCCCGACACTTCAATGCCGTACTGGATGCAGTACTTCGATTGCACTCAGTCCTATTGAAAGCACCTGAACCAGTTACCAATGCATGTACGGACGATAGGTGGAAGTGGTTTGAGGTAATGAAATGTTGTTATCTTGTCTTCCACTGGAGGACAACCTAACTTCAAGAAAATACTCGACCACTGAAACTTTATCACTCGTCTGTTAGCAGAACTGCTTAGGTGCTCTTGATGGTACACACATCAAGGTCAACGTCAGTGCGGTAGATCGCCCCAGATATCGGACGAGGAAGGGGGAGATTGCTACTAATGTACTGGCCGTTTGTTCTCAGAATGGCGAGTTCATTTTCGTGTTCCCAGGGTGGGAAGGATCTGCATCGGACTCAAGGGTACTTCGTGATGCAGTCTCACGTCCTTCGGGACTAAAGGTTCCCAGGGGCTACTACTACCTCTGTGATGCCGGATATCCTAACGCGGATGGATTCCTAGCACCATATCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCCACCCACGACCCCGAAGGAGCTTTTCAACATGAGACATTCGTCGGCACGAAATGTCATAGAAAGAGCCTTCGGACTGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCTTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGCTGCTACCTTCATAACCTAATAACACGGGAGATGGGACAGGATCCTTCGATGGAGGCCACTCATACGGGGGAGCAAGATTCTAACGATATGGGAACAGAGAACATCACGTTCGTTGAATCCACCACTGCATGGAGTTCCTGGAGGGATGAATTGGCGAATCGAATGTTCGCTGAATGGAACAACAACTGAGATATGCCTCAACTTCTGCTTGTTAAATTTTTTTGTAAAACGAAACTGTAGACAGTGCCACTCTTTGTTTGTATATCGAACATGTCGTAGGAACAGTATGATGTAGATAGGTCGTAATGGGTGTACGAAAACATGTATATTTTGGAAATGTAGGTTTGAATTTTAACTGTTTATTGGAACAAATGTTCATTAAATTTTACTAGTATGGAACTTTGTAAATGTTCTTTATTCTTTATGTCATCCACCTATGGTTCTGATTATTTGCTAAACATGCAGATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCGGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGCGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGTAAGCGAACAACGATCATTATTATGATATACATCTGATACGCACATCTGCGAAAAATGCATGCTAATAAAACATTTATCTTCCACCTGTAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA

mRNA sequence

ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTTCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAGATTGTTAGCACATGTAGTGGAACATACCATGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCGGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGCGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA

Coding sequence (CDS)

ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTTCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAGATTGTTAGCACATGTAGTGGAACATACCATGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCGGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGCGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA

Protein sequence

MPGVYMTWYECARQVHGFRGAVYQSYETLDDAEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVRLLAHVVEHTMIVRRSYRMDAQDNEIQELIAILTIICATQYQFIATMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCNIVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPVIDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYCMEILGRASRQPPQP
Homology
BLAST of Spg008665 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-67
Identity = 133/288 (46.18%), Postives = 183/288 (63.54%), Query Frame = 0

Query: 119 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 178
           +++ SK  KH WT  EDEVLV+CLL LV+ GGWRADNGTF+ GY                
Sbjct: 139 ASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGY---------------- 198

Query: 179 IVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 238
                          KQY AIAEMMGPACSGFGWN+ +KCIE EK +FD WV+GHP A+G
Sbjct: 199 --------------LKQYTAIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQG 258

Query: 239 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 298
           L N+PFP+F +L +VFG+D A G R +TP+EM+ +     + ++DM+++ ED  +P+P  
Sbjct: 259 LLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTE-EDDMDINLEDFDIPNPHG 318

Query: 299 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTK 358
           ++P  GE++  TPT  T  AG SR   KRR   G++ +      + T+++I KIA W  +
Sbjct: 319 LEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQRE 378

Query: 359 RDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFP 407
           + E+E S  K LYAELQ+IPG+ ++D L+VA +LL D  ML  F+D+P
Sbjct: 379 KMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYP 395

BLAST of Spg008665 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 3.8e-67
Identity = 137/302 (45.36%), Postives = 187/302 (61.92%), Query Frame = 0

Query: 119 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 178
           +++ SK  KH WT   DEVLV+CLL LV+ GGWRADNGTF+ GY  Q+ K+MKE++ G N
Sbjct: 2   ASTNSKATKHRWT-TIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGSN 61

Query: 179 IVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 238
           I V+PN++SRVK LKKQY+AIAEMMGPACSGFGWN+ERKCIEAEK +FD WV+       
Sbjct: 62  IQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK------- 121

Query: 239 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 298
                              +AR +                  ++DM+++ ED  +P+P  
Sbjct: 122 -------------------TARDIE-----------------EDDMDINLEDFDIPNPHG 181

Query: 299 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTK 358
           ++P  GE++  TPT     AG SR   KRR   G++ +      + T+++I KIA W  +
Sbjct: 182 LEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQRE 241

Query: 359 RDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYCMEIL 418
           + E+E S  K LY +LQ+IPG+ ++D L+VA +LL D  ML  F+D+P EWK+  CM IL
Sbjct: 242 KMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 259

Query: 419 GR 421
           GR
Sbjct: 302 GR 259

BLAST of Spg008665 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 9.2e-61
Identity = 118/244 (48.36%), Postives = 165/244 (67.62%), Query Frame = 0

Query: 112 FIATMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMK 171
           F+ T   +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+  Y  Q+ K+MK
Sbjct: 27  FVETTNMASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMK 86

Query: 172 ERLPGCNIVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVE 231
           E++P  NI V+ N+ESRVK LKKQY AIA+MMGPACS FGWN+ERKCIEAEK +FD WV+
Sbjct: 87  EKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 146

Query: 232 GHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDC 291
           GHP A+GL N+PF +F +L +VFG+D A G R +  +EM  +     + ++DM+++ ED 
Sbjct: 147 GHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTE-EDDMDINLEDF 206

Query: 292 YVPSPPVIDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEK 351
            +P+P  ++P  GE++  T    T  AG SR   KRR   G++ +      Q T+++I K
Sbjct: 207 DIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGK 266

Query: 352 IALW 356
           IA W
Sbjct: 267 IAAW 269

BLAST of Spg008665 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 6.0e-60
Identity = 116/237 (48.95%), Postives = 162/237 (68.35%), Query Frame = 0

Query: 119 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 178
           +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+  Y  Q+ K+MKE++P  N
Sbjct: 2   ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 61

Query: 179 IVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 238
           I V+ N+ESRVK LKKQY AIA+MMGPACS FGWN+ERKCIEAEK +FD WV+GHP A+G
Sbjct: 62  IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 121

Query: 239 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 298
           L N+PF +F +L +VFG+D A G R +  +EM  +     + ++DM+++ ED  +P+P  
Sbjct: 122 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTE-EDDMDINLEDFDIPNPHG 181

Query: 299 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALW 356
           ++P  GE++  T    T  AG SR   KRR   G++ +      Q T+++I KIA W
Sbjct: 182 LEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 237

BLAST of Spg008665 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 1.5e-55
Identity = 121/304 (39.80%), Postives = 171/304 (56.25%), Query Frame = 0

Query: 120 ASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCNI 179
           +++++  +H+WT EE+  LV+CL+ LV +GGW++DNGTFR GY  Q+ +MM E+LPGC +
Sbjct: 2   STSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQV 61

Query: 180 VVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKGL 239
             +  I+ R+KTLK+ + AIAEM GPACSGFGWNDE KCI AEKE+FD WV  HP AKGL
Sbjct: 62  RATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGL 121

Query: 240 RNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDE----DMNVDFEDCYVPS 299
            N+PFP+++EL  VFG+D A G  A T  ++    EP    D     D N DF   Y   
Sbjct: 122 LNKPFPYYDELTYVFGRDRATGRFAETFADVGSN-EPGGGYDRFDMGDGNEDFSPVYSQG 181

Query: 300 PPVI-DPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIAL 359
             +  D            GRT  +G  R   KR        E +      T +Q+ +IA 
Sbjct: 182 VDISQDDVRASRPSRASEGRTGSSGSKR---KRGSQRDFELEAIHLALDQTNEQLRQIAE 241

Query: 360 WPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYC 419
           WP +    +   R E +  L+ +P ++  D  ++ R LLS    L  F+  P + +  +C
Sbjct: 242 WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFC 301

BLAST of Spg008665 vs. ExPASy Swiss-Prot
Match: Q07762 (Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.8e-04
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 0

Query: 3   GVYMTWYECARQVHGFRGAVYQSYETLDDAEATYIAYTMEVDNHSSRHGD 53
           G+Y TW +C+ QV GF GAVY+S+ TL +A A   A+        S  GD
Sbjct: 166 GIYSTWDQCSEQVKGFSGAVYKSFRTLSEARAYLTAHPARSGLEKSDRGD 215

BLAST of Spg008665 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.4e-68
Identity = 133/288 (46.18%), Postives = 183/288 (63.54%), Query Frame = 0

Query: 119 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 178
           +++ SK  KH WT  EDEVLV+CLL LV+ GGWRADNGTF+ GY                
Sbjct: 139 ASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGY---------------- 198

Query: 179 IVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 238
                          KQY AIAEMMGPACSGFGWN+ +KCIE EK +FD WV+GHP A+G
Sbjct: 199 --------------LKQYTAIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQG 258

Query: 239 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 298
           L N+PFP+F +L +VFG+D A G R +TP+EM+ +     + ++DM+++ ED  +P+P  
Sbjct: 259 LLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTE-EDDMDINLEDFDIPNPHG 318

Query: 299 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTK 358
           ++P  GE++  TPT  T  AG SR   KRR   G++ +      + T+++I KIA W  +
Sbjct: 319 LEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQRE 378

Query: 359 RDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFP 407
           + E+E S  K LYAELQ+IPG+ ++D L+VA +LL D  ML  F+D+P
Sbjct: 379 KMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYP 395

BLAST of Spg008665 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-67
Identity = 137/302 (45.36%), Postives = 187/302 (61.92%), Query Frame = 0

Query: 119 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 178
           +++ SK  KH WT   DEVLV+CLL LV+ GGWRADNGTF+ GY  Q+ K+MKE++ G N
Sbjct: 2   ASTNSKATKHRWT-TIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGSN 61

Query: 179 IVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 238
           I V+PN++SRVK LKKQY+AIAEMMGPACSGFGWN+ERKCIEAEK +FD WV+       
Sbjct: 62  IQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK------- 121

Query: 239 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 298
                              +AR +                  ++DM+++ ED  +P+P  
Sbjct: 122 -------------------TARDIE-----------------EDDMDINLEDFDIPNPHG 181

Query: 299 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTK 358
           ++P  GE++  TPT     AG SR   KRR   G++ +      + T+++I KIA W  +
Sbjct: 182 LEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQRE 241

Query: 359 RDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYCMEIL 418
           + E+E S  K LY +LQ+IPG+ ++D L+VA +LL D  ML  F+D+P EWK+  CM IL
Sbjct: 242 KMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 259

Query: 419 GR 421
           GR
Sbjct: 302 GR 259

BLAST of Spg008665 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.4e-61
Identity = 118/244 (48.36%), Postives = 165/244 (67.62%), Query Frame = 0

Query: 112 FIATMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMK 171
           F+ T   +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+  Y  Q+ K+MK
Sbjct: 27  FVETTNMASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMK 86

Query: 172 ERLPGCNIVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVE 231
           E++P  NI V+ N+ESRVK LKKQY AIA+MMGPACS FGWN+ERKCIEAEK +FD WV+
Sbjct: 87  EKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 146

Query: 232 GHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDC 291
           GHP A+GL N+PF +F +L +VFG+D A G R +  +EM  +     + ++DM+++ ED 
Sbjct: 147 GHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTE-EDDMDINLEDF 206

Query: 292 YVPSPPVIDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEK 351
            +P+P  ++P  GE++  T    T  AG SR   KRR   G++ +      Q T+++I K
Sbjct: 207 DIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGK 266

Query: 352 IALW 356
           IA W
Sbjct: 267 IAAW 269

BLAST of Spg008665 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.9e-60
Identity = 116/237 (48.95%), Postives = 162/237 (68.35%), Query Frame = 0

Query: 119 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 178
           +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+  Y  Q+ K+MKE++P  N
Sbjct: 2   ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 61

Query: 179 IVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 238
           I V+ N+ESRVK LKKQY AIA+MMGPACS FGWN+ERKCIEAEK +FD WV+GHP A+G
Sbjct: 62  IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 121

Query: 239 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 298
           L N+PF +F +L +VFG+D A G R +  +EM  +     + ++DM+++ ED  +P+P  
Sbjct: 122 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTE-EDDMDINLEDFDIPNPHG 181

Query: 299 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALW 356
           ++P  GE++  T    T  AG SR   KRR   G++ +      Q T+++I KIA W
Sbjct: 182 LEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 237

BLAST of Spg008665 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.3e-56
Identity = 121/304 (39.80%), Postives = 171/304 (56.25%), Query Frame = 0

Query: 120 ASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCNI 179
           +++++  +H+WT EE+  LV+CL+ LV +GGW++DNGTFR GY  Q+ +MM E+LPGC +
Sbjct: 2   STSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQV 61

Query: 180 VVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKGL 239
             +  I+ R+KTLK+ + AIAEM GPACSGFGWNDE KCI AEKE+FD WV  HP AKGL
Sbjct: 62  RATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGL 121

Query: 240 RNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDE----DMNVDFEDCYVPS 299
            N+PFP+++EL  VFG+D A G  A T  ++    EP    D     D N DF   Y   
Sbjct: 122 LNKPFPYYDELTYVFGRDRATGRFAETFADVGSN-EPGGGYDRFDMGDGNEDFPPVYSQG 181

Query: 300 PPVI-DPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIAL 359
             +  D            GRT  +G  R   KR        E +      T +Q+ +IA 
Sbjct: 182 VDISQDDVRASRPSRASDGRTGSSGSKR---KRGSQRDFELEAIHVALDQTNEQLREIAQ 241

Query: 360 WPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYC 419
           WP +    +   R E +  L+ +P ++  D  ++ R LLS    L  F+  P + +  +C
Sbjct: 242 WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFC 301

BLAST of Spg008665 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-13
Identity = 46/146 (31.51%), Postives = 71/146 (48.63%), Query Frame = 0

Query: 124 KKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTF-----RAGYQNQIGKMMKERLPGCN 183
           K + + W+PEE ++LVQ L+  +    WR  NGT         +  +I K        C 
Sbjct: 11  KGDYNPWSPEETKLLVQLLVEGIN-NNWRDSNGTISKLTVETKFMPEINKEF------CR 70

Query: 184 IVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 243
                +  SR+K LK QY +  ++     SGFGW+   K   A  E++  +++ HP  K 
Sbjct: 71  SKNYNHYLSRMKYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQ 130

Query: 244 LRNRPFPWFNELALVFGKDSARGVRA 265
           LR   F +F+EL ++FG+  A G  A
Sbjct: 131 LRYDTFEFFDELQIIFGEGVATGKNA 148

BLAST of Spg008665 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-11
Identity = 44/187 (23.53%), Postives = 81/187 (43.32%), Query Frame = 0

Query: 115 TMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVG----------GWRADNGTFRAGYQN 174
           T A+    S + +  WTP  D  L+  L+  V  G           W      F A + +
Sbjct: 312 TKASQEQNSDRTRIFWTPPMDYHLIDLLVEQVNNGNRVGQTFITSAWNEMVTAFNAKFGS 371

Query: 175 QIGKMMKERLPGCNIVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKE 234
           Q  K +              +++R K L++ Y  I  ++    +GF W+  R  + A+ +
Sbjct: 372 QHNKDV--------------LKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDD 431

Query: 235 IFDLWVEGHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDM 291
           I++ +++ HP+A+  R +  P +  L  +FGK+++ G   R      P P     ++E  
Sbjct: 432 IWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYTRLAQAFDPSPAETVRMNESG 482

BLAST of Spg008665 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 4.0e-06
Identity = 32/170 (18.82%), Postives = 70/170 (41.18%), Query Frame = 0

Query: 116 MAASASASKKEKHIWTPEEDEVLVQCLL----------HLVQVGGWRADNGTFRAGYQNQ 175
           M+   + + + +  WTP  +   +  +L          H      W      F + + +Q
Sbjct: 1   MSNQTTCNDRTRTYWTPTMERFFIDLMLEHLHRGNRTGHTFNKQAWNEMLTVFNSKFGSQ 60

Query: 176 IGKMMKERLPGCNIVVSPNIESRVKTLKKQYMAIAEMMGPACSGFGWNDERKCIEAEKEI 235
             K +              ++SR   L KQY  +  ++     GF W+   + +  +  +
Sbjct: 61  YDKDV--------------LKSRYTNLWKQYNDVKCLLDH--GGFVWDQTHQTVIGDDSL 120

Query: 236 FDLWVEGHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPE 276
           + L+++ HP+A+  + +P   F++L L++G   A G  + +  ++  E E
Sbjct: 121 WSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADGRYSMSSHDLEIEDE 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07921.11.3e-6746.18hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
KAA0050106.13.8e-6745.36retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008455678.19.2e-6148.36PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
TYJ96933.16.0e-6048.95retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0038975.11.5e-5539.80retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q077622.8e-0444.00Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3C7T46.4e-6846.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U7F71.9e-6745.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C2524.4e-6148.36uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P... [more]
A0A5D3BC952.9e-6048.95Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CWL27.3e-5639.80Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G27260.12.0e-1331.51unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.24.2e-1123.53unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.14.0e-0618.82unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011320Ribonuclease H1, N-terminalPFAMPF01693Cauli_VIcoord: 2..34
e-value: 1.9E-10
score: 40.8
IPR037056Ribonuclease H1, N-terminal domain superfamilyGENE3D3.40.970.10coord: 1..37
e-value: 2.5E-10
score: 42.6
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 130..225
e-value: 5.6E-9
score: 36.9
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 119..419
IPR009027Ribosomal protein L9/RNase H1, N-terminalSUPERFAMILY55658L9 N-domain-likecoord: 2..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008665.1Spg008665.1mRNA