Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAGCAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGGTAAGTTTTGGATTTGTTTTTTCCCATGCTTTTGTTTTTGTATGCTGATCACATTCTTGAATTTTACTTCCGAGTTAAAAATGGCGATTAGTTGATTAAGCAAAGTCAAAAAGTCTGTGTTAGGCAATTTAATTTCTTTTCTCCAGCCATCGGATTCAAAATTCCCATACTTTTTTTCGCCGTTCCATTGAGTGTTTGTTCGATTCTTGGTTTTAGTTTTATTCTGCCGTTGTTGTTGAAGCCATTATTGTGAGAACCATTATACCAGAACTGAAATGTTATTTTAAGAAAAATTTAGACAATCTCCTTTATTTTAATGTCAGATGCACTCAATATAGATCCATTTTTTTAATACATACACATCTTTTCACAAAATATTTACAATGGTTGATAAATTAAATTTAAAATTCATATAGACACATCCTTTCAAACCATACAACACATCCTCTCAGACACATCCTTTCACCCTTTAAATGCAAATCGTTTTGATTTTCTTGGACAAAAACTTTATTTTCAAAATGTCAAATGAGAAGATGATGATTTCTTTCATAAGAGAGCTTAAAGCCTTTCAAAGGGAATGGAAGATAAAAGTTTTTGTTCTTCGTAAAGGGAATGTTGAATCATGTCAGAATGGCGCCTTGAAAATACAGAAATTTATTTTCATCGATGAAGAGGTAATTTTGATCTTCAAAAGTTAATATTTATCCATTGTTATTCAAATTTAGATTTGGAAATTCCTACCTATGCAAATCATGGATGATGATATTTCCTTCTCTATTTTAAATAATGTTTCAGTTTACATCAAATACAGGGGAATTAAAACTTCAATTTATTCAATTTTTCATGTGTTTACAGGGATCCAAAATTCAAGCAGTGATGTTCAACGAAGTTATAGAAACCATCGGAAATGGTATTTTAAGGAATAAATTTTATTTGATTGAAAATGGAAATGTGAAAAATGTGAATGGTAAATATGCAAATGTAAATGAAGAGATTGAAATGACCCTGTCTTCATCTACGACGATCGAAGAAATTGAAGAACCATTTCCTCTTCATAAATTGACGTATAATTTCATCCAAATTTCTGAGATGGAATCATTTGGGATGACAGGAAAAATGATAGGTAACTATTTTTCCAAAAAAAAAATTATAGTATATTTAGATATTATTCGATATATATATATTTTTTTCATGTTAATTCTCTACCTACTTTGCAAATTTTATTGGAATTGTATTCTCTGTGAGATCTATGGTTGAAATAAAAATGAAAAATTCAAACAATAAAACATTGATGAAGAGAGAGATATTTTTGCTAGAACAAAGGTTAGTAATTGTTTCAATTTTTTTTCCTTTACAAAAATTATTTATTTCATGGTTGTTTTATGTTAAAAAGTGGTAATTTAATTTGTAGTGGCAAGCCATTTAGATTGACACTGTGGAATGATTTGGCAACCAATGAAGGTTTAGAATTAGAAGAACAAATTATTCACAATCCAATAATTTTATGAAGGTTTAGAATTAGAAGAACAAATTATTCACAATCCAATAATTTTAGCATTCAATCTGAAGGTGAACATGTATGAAGGTAAACTTTTTAAATCCAATATATAACACTAATATAAGGGGCAGGAGGATTCTTAATTTAACTTTTATTTTTTCTTATGTTAGGAGAATTAAGCATGGCAACAACAATGACGAGCAACATCTTAATTGAACCAGATTTTGTAGATTCAAAAGATCTAAAAGAACGGTATTTATCCATATATCTCTAAATTTGAAATTTGCATTTACTATTAAATTAACCTCTACAGGTATTTGTTCATATATCTCTAAATTTGAAATCTGCATTTACTATTTAAATTAACCTCTACCTTTATTTAAATTAACCTCTACATTTATACTATTCTTGTAGGAGGGAACTTCTTTTGGATCACACATACATGTCTACTTTTATTCCTCCCTCTAAAAAAATGGAAAGAGCAAAATTAGTAAGCATCAAAGATATTATTCATGGGTTAGTTGATGATTTATATTGTTGTATCATTGGCTCAATTGTCGAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCAGAGAGTGTATCCCAATGGAAGTCAGAAAATGGCTCACTGTAACAATTGCAACGACCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTAAAATTTGTGATGGCCAAATGACTGCACATATAACTGCTTTTGAAGCTGCAGAAGTCATAGTTGGAAGTAGTGTTTCCCATTATGCAACCCAAATTTTACAGGTAATCATATAAAATAGAAATTTATTTCTTAAATAAATCCCCTCTAAATTTTTATCTAACATTTTATATTTGTTCATTTGTTGACTACAATCTCAGATGAAAAAGAAGGAGGATTCCAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAATTCCTCGTTCGCATGGACAAGAAGTTTGAAGGAGATCGATCAAAGGGACATTTTGTGGTTCAAGAGATAAATAAAGTAGAGGTTGAAGAATCTGACTTAGAAACTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAATAGAAAGATAGTTTCAATTTTTTTTTTTTATATTTTTCACATTTGTTTTGTTAATTTAAACGATCCACATGTAATGTTAACTATCATATTTCAACTTTGGTATTTTTAATTTTTCATTAGTTTCCTTATTTTAGTGGCATAATCATAAATGATGTTTAGTGGGAATAAAATGACCAATTATATTGTAATGAGTTTTT
mRNA sequence
ATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAGCAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGGGATCCAAAATTCAAGCAGTGATGTTCAACGAAGTTATAGAAACCATCGGAAATGGTATTTTAAGGAATAAATTTTATTTGATTGAAAATGGAAATGTGAAAAATGTGAATGGTAAATATGCAAATGTAAATGAAGAGATTGAAATGACCCTGTCTTCATCTACGACGATCGAAGAAATTGAAGAACCATTTCCTCTTCATAAATTGACGTATAATTTCATCCAAATTTCTGAGATGGAATCATTTGGGATGACAGGAAAAATGATAGGAGAATTAAGCATGGCAACAACAATGACGAGCAACATCTTAATTGAACCAGATTTTGTAGATTCAAAAGATCTAAAAGAACGGAGGGAACTTCTTTTGGATCACACATACATGTCTACTTTTATTCCTCCCTCTAAAAAAATGGAAAGAGCAAAATTAGTAAGCATCAAAGATATTATTCATGGGTTAGTTGATGATTTATATTGTTGTATCATTGGCTCAATTGTCGAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCAGAGAGTGTATCCCAATGGAAGTCAGAAAATGGCTCACTGTAACAATTGCAACGACCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTAAAATTTGTGATGGCCAAATGACTGCACATATAACTGCTTTTGAAGCTGCAGAAGTCATAGTTGGAAGTAGTGTTTCCCATTATGCAACCCAAATTTTACAGATGAAAAAGAAGGAGGATTCCAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAATTCCTCGTTCGCATGGACAAGAAGTTTGAAGGAGATCGATCAAAGGGACATTTTGTGGTTCAAGAGATAAATAAAGTAGAGGTTGAAGAATCTGACTTAGAAACTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAATAGAAAGATAG
Coding sequence (CDS)
ATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAGCAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGGGATCCAAAATTCAAGCAGTGATGTTCAACGAAGTTATAGAAACCATCGGAAATGGTATTTTAAGGAATAAATTTTATTTGATTGAAAATGGAAATGTGAAAAATGTGAATGGTAAATATGCAAATGTAAATGAAGAGATTGAAATGACCCTGTCTTCATCTACGACGATCGAAGAAATTGAAGAACCATTTCCTCTTCATAAATTGACGTATAATTTCATCCAAATTTCTGAGATGGAATCATTTGGGATGACAGGAAAAATGATAGGAGAATTAAGCATGGCAACAACAATGACGAGCAACATCTTAATTGAACCAGATTTTGTAGATTCAAAAGATCTAAAAGAACGGAGGGAACTTCTTTTGGATCACACATACATGTCTACTTTTATTCCTCCCTCTAAAAAAATGGAAAGAGCAAAATTAGTAAGCATCAAAGATATTATTCATGGGTTAGTTGATGATTTATATTGTTGTATCATTGGCTCAATTGTCGAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCAGAGAGTGTATCCCAATGGAAGTCAGAAAATGGCTCACTGTAACAATTGCAACGACCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTAAAATTTGTGATGGCCAAATGACTGCACATATAACTGCTTTTGAAGCTGCAGAAGTCATAGTTGGAAGTAGTGTTTCCCATTATGCAACCCAAATTTTACAGATGAAAAAGAAGGAGGATTCCAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAATTCCTCGTTCGCATGGACAAGAAGTTTGAAGGAGATCGATCAAAGGGACATTTTGTGGTTCAAGAGATAAATAAAGTAGAGGTTGAAGAATCTGACTTAGAAACTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAATAGAAAGATAG
Protein sequence
MKSYASAADFSRFDHHYQQQQSKPKASRVGDFFSCLCSVCNLGMGSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMESFGMTGKMIGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLVDDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMAHCNNCNDLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVLHVKKKIKIER
Homology
BLAST of Spg008659 vs. NCBI nr
Match:
KAG5584663.1 (hypothetical protein H5410_045097 [Solanum commersonii])
HSP 1 Score: 147.5 bits (371), Expect = 2.2e-31
Identity = 102/325 (31.38%), Postives = 166/325 (51.08%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G+KIQA +FN+ IET + + NK Y I G + VN Y++V++E+E+T +T I+E
Sbjct: 80 GTKIQATLFNKHIETWKDSLKPNKRYYIAKGRLDRVNPNYSSVHKEVELTFIDNTIIDET 139
Query: 105 EEPFPLHKLTYNFIQISEMESFGMTGKMIGELSMATTMTSNILIEPDFVDSKDLKERREL 164
K + F+ + + G ++G ++T S+ILI F + DL+ RE+
Sbjct: 140 SHEVSTLKFSDGFVSLDHADKL-PNGAILGTFGISTIPVSSILINLMFQKAMDLRAWREI 199
Query: 165 LLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLVDDLYCCII---GSIVEIVNKDNPWFEK 224
+ + PS+ M RA V + I+ GL+ D + I++++N D PW+
Sbjct: 200 IKAEN-KDIIVTPSRVMRRAIKVPLPHILDGLLADSQDSMYKFKEKIIDVINIDEPWYSS 259
Query: 225 CKLCNQRVYPNGSQKMAHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGS 284
CK C+++V + C NCN + V++ +Y L+L++C G+ A + FEA + ++G
Sbjct: 260 CKKCHKKV--TFIDETTACTNCNIENVEYEMRYCLRLEMCGGEQRARVILFEATKFLLGC 319
Query: 285 SVSHYATQILQMKKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVE 344
+V Y KKE+ K YR +L + K Y FLVR+DK + + QEI +E
Sbjct: 320 TVQEYIQS--TSVKKEECKNYRKLVLTKDKEYNFLVRIDK--NEPNPPRNLIAQEIYPLE 379
Query: 345 VEE----SDLETLEVLHVKKKIKIE 362
E D E L L K+ KI+
Sbjct: 380 DEAPTIVEDEEKLAPLGRKRTKKIK 396
BLAST of Spg008659 vs. NCBI nr
Match:
XP_015160730.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit D-like [Solanum tuberosum])
HSP 1 Score: 137.5 bits (345), Expect = 2.3e-28
Identity = 84/299 (28.09%), Postives = 153/299 (51.17%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G+KIQ +FN+ + N+ Y I NG + + +V++++E+ ++T + E
Sbjct: 58 GTKIQTTLFNKDVHAWNKSFQLNQSYYIINGKLNGAKPNFLSVHKDLELAFMNNTDVVED 117
Query: 105 EEPFPLHKLTYNFIQISEMESFGMTGKMIGELSMATTMTSNILIEPDFVDSKDLKERREL 164
+ F + + FI E E G + G+ ++TT S++LI P F + +L+E +
Sbjct: 118 KSQFKTEQFSNGFISFDEAEKI-TNGSLFGDFVLSTTPVSSLLINPQFEKANNLQEWNDN 177
Query: 165 LLDHTYMSTFIPPSKKMERAKLVSIKDIIHG---LVDDLYCCIIGSIVEIVNKDNPWFEK 224
+ + + PS+ M+ A+ V I +I++G +V D+Y + I N +PW+
Sbjct: 178 MKAQK-IDLSLMPSRLMQTARQVKITNILNGSLAIVKDMYYKFNAMVSGIDNNTDPWYHA 237
Query: 225 CKLCNQRVYPNGSQKMAHCNNC-NDLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGS 284
CK C +RV S A C C + + + +Y LK+ + D IT F+AA+ +GS
Sbjct: 238 CKKCYKRVTVINSN--ATCTYCRTEDIDYEARYRLKIDVTDEDQFLRITLFDAAKYFLGS 297
Query: 285 SVSHYATQILQMKKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKV 340
V Y + +KKE+S+ YR +L++GK + LV++D+ F + + + EI++V
Sbjct: 298 HVKDYV--LSTSEKKEESEYYRKLVLSKGKEFSILVKIDRNFPNVEANMNVIAMEIHEV 350
BLAST of Spg008659 vs. NCBI nr
Match:
XP_020262698.1 (uncharacterized protein LOC109838687 [Asparagus officinalis])
HSP 1 Score: 136.0 bits (341), Expect = 6.6e-28
Identity = 114/400 (28.50%), Postives = 177/400 (44.25%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G KIQ +MF E IE + + +N I NG VK +N Y NV+E IE+TL+ + +I+E
Sbjct: 559 GEKIQGIMFGETIEMYKHMLQKNNVLYISNGEVKPINPLYGNVHESIELTLTKNISIKES 618
Query: 105 EEPFPLHKLTYNFIQISEMES--------------------------------------- 164
+ F K+ NFI I + S
Sbjct: 619 KAEFQFDKILNNFISIKDAISNEDTRNINVLAMIANVKPMIKYVTRYNKADTRRDIIIVD 678
Query: 165 ----------FG----MTGKMI---------------------GELSMATTMTSNILIEP 224
FG G MI GEL + + + S I I P
Sbjct: 679 KNDITLSVTLFGDLAVNEGSMIEGTKHETTIIALSDFKISLYKGELCLTSQIASTIFINP 738
Query: 225 DFVDSKDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLVDD---LYCCIIGS 284
D +KD+ RE L + T PS+ + A ++I DI+ + Y IG
Sbjct: 739 DIQLAKDM---REWALSKENIKTNDAPSRLFKNATEMNIGDIMQASQESSKAQYGSFIGK 798
Query: 285 IVEIVNKDNPWFEKCKLCNQRVYPNGSQKMAHCNNCNDLVQFIRKYMLKLKICDGQMTAH 344
I I+N+ W+ C CN++V N K +C N+ I +Y++K+ + D A
Sbjct: 799 ISNILNRHEAWYYSCTGCNKKVDKNIYDKCQNCQKNNE--DSIPRYVVKIIVEDEIDNAR 858
Query: 345 ITAFEAAEVIVGSSVSHYATQILQMKKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRS 363
+T F+AAE ++G + I +KK S ++ F+L GKTYKFLV++D++ + +R+
Sbjct: 859 VTLFDAAETLIGCDAQKFMDDI--KEKKNQSSFFQKFVLNIGKTYKFLVKLDERSKEERA 918
BLAST of Spg008659 vs. NCBI nr
Match:
KAG5574299.1 (hypothetical protein H5410_054433 [Solanum commersonii])
HSP 1 Score: 134.4 bits (337), Expect = 1.9e-27
Identity = 109/391 (27.88%), Postives = 176/391 (45.01%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G+KIQA +FN+ IET + + NK Y I G + VN Y++V++E+E+ + +T I+E
Sbjct: 33 GTKIQATLFNKHIETWKDSLKPNKSYYIAKGRLDRVNPNYSSVHKEVELAFTDNTIIQET 92
Query: 105 EEPFPLHKLTYNFIQISE---------------------------------------MES 164
E HK + F+ + ME
Sbjct: 93 EHAVSTHKFSDGFLSLEHADKLPNGAILDLICVLVSVNPLIQNVNFKRREIVVTNQFMEH 152
Query: 165 FGMT---------GKMI---------------------GELSMATTMTSNILIEPDFVDS 224
+T G + G ++T S++LI P F +
Sbjct: 153 TSVTLWGDFAENDGSFLEKLQDDKPILALCDVRVSIFKGRFGISTIPVSSVLINPMFQKA 212
Query: 225 KDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLVDDLYCCII---GSIVEIV 284
DL+ RE++ T I P+K M+RA V + I+ G D C+ +I +I+
Sbjct: 213 NDLRAWREIIKADNKDLT-ITPTKVMKRAIEVPLAKILAGFSADSEDCMYKFKATIKDIL 272
Query: 285 NKDNPWFEKCKLCNQRVYPNGSQKMAHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAF 344
NKD PW+ CK C+++V + A CNNCN D V++ +Y L+L++C+G+ A + F
Sbjct: 273 NKDEPWYSACKKCHKKV--QFIEDTAACNNCNSDNVEYKMRYCLRLEVCNGERRARVILF 332
Query: 345 EAAEVIVGSSVSHYATQILQMKKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHF 360
EAA+ ++G +V Y KK++ YR +L++ + FLVR+D R
Sbjct: 333 EAAKYLLGCNVQEYIES--NSVKKKECYYYRKLVLSKDNQFNFLVRIDMNDPNPRRS--L 392
BLAST of Spg008659 vs. NCBI nr
Match:
XP_020242959.1 (replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis])
HSP 1 Score: 134.0 bits (336), Expect = 2.5e-27
Identity = 93/340 (27.35%), Postives = 170/340 (50.00%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G+ IQA++FN++IE +++ + Y I NG VK N KY +N E E+TL++ T I E
Sbjct: 67 GTLIQAILFNKLIEKFSGLLIKEETYTITNGEVKPPNLKYPTINPEKELTLTTKTIIRET 126
Query: 105 EEPFPLHKLTYNFIQISEMESFG---MTGKMIG-------------------------EL 164
++ L KL F+ ++ +F M ++G +
Sbjct: 127 KKIVSLEKLKPTFLSFKDVSAFDDGIMPFDVVGFVITVKPIFTNPKSKRREVIIMNKERV 186
Query: 165 SMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIH-- 224
S+ T ++ +L+ P+ ++ + + + S + +K++ +A V + D+I+
Sbjct: 187 SITTKSSTLVLVNPEIPQCSEMIDWLKNSNSESSKSVLLTTTKRITQANRVKLIDVINTS 246
Query: 225 -GLVDDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYP-NGSQKMAHCNNC-NDLVQFIR 284
L ++C + I+ I+N + P+F C C + V+ NGS A+C NC N +
Sbjct: 247 PQLSKSMFCSFVAKIITIINAEEPFFSACTKCKKAVHEINGS--TANCTNCKNGNSDWTI 306
Query: 285 KYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKKKEDSKIYRNFILAQGKT 344
+Y L+L++ DG TA++T F+ AE+++G + Y ++M + E S+ Y+ K
Sbjct: 307 RYNLRLEVNDGTDTAYVTLFDEAEILIGCTAIAY----VEMFEDESSECYQKMKSCLEKE 366
Query: 345 YKFLVRMDKKFEGDRSKGHFVVQEINKV-EVEESDLETLE 351
Y FLV++++K E +R + QE+ KV E+ +ET E
Sbjct: 367 YVFLVKINEKEESNRKARCIIAQEVRKVEEIHPPTVETEE 400
BLAST of Spg008659 vs. ExPASy Swiss-Prot
Match:
Q9FME0 (Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=3702 GN=RPA1D PE=2 SV=1)
HSP 1 Score: 47.8 bits (112), Expect = 3.1e-04
Identity = 42/192 (21.88%), Postives = 92/192 (47.92%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G++IQA MFN+ + K Y I G++K N ++ V + EMTL+ ++ +EE
Sbjct: 228 GTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 287
Query: 105 --EEPFPLHKLTYNFIQISEMESFGMTGKMIGEL----SMATTMTSNILIEPDFVDSKDL 164
EE F + + +NF+ I E+ + ++I + S++ TM+ + + + +D+
Sbjct: 288 SSEEMF-IPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDI 347
Query: 165 ---KERRELLLDHTYMSTFIPPSKKM----ERAKLVSIKDIIHGLVDDLYCCIIGSIVEI 224
E R+ ++ + +++ +++ +++IK + G + I +
Sbjct: 348 TLADESRKTVVVSLWNDLATGIGQELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVV 407
BLAST of Spg008659 vs. ExPASy TrEMBL
Match:
A0A1S4BAI4 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107806315 PE=4 SV=1)
HSP 1 Score: 127.9 bits (320), Expect = 8.7e-26
Identity = 98/369 (26.56%), Postives = 162/369 (43.90%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G+KI A +FN IE N + +NK Y I NG + + N + +V+ E+E+ +T +EE
Sbjct: 58 GTKIHATLFNGYIELWKNYLQQNKIYYIINGRINSANPNFQSVHNELEIGFKENTLVEES 117
Query: 105 EEPFPLHKLTYNFIQISEMES------FGMTGKMI------------------------- 164
F + NFI E F + G ++
Sbjct: 118 NSHFSTIGFSNNFISFDEASKCTNGTIFDIVGILVDIKPSMGEGSKKRREIVLINEMVDR 177
Query: 165 --------------------------------------GELSMATTMTSNILIEPDFVDS 224
G S++TT S+I+I P F +
Sbjct: 178 KTVTLWNDFSEIDGQVLQKLIDEKPVVAACDVRKTSYRGNFSISTTYVSSIMINPKFEKA 237
Query: 225 KDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLVD---DLYCCIIGSIVEIV 284
L++ + + + PS +++ A+ V I+DI D D Y I +I+
Sbjct: 238 VALQKWHDYKKAKN-IDISLLPSIQLKNAREVKIEDIKDDSFDNKEDTYFKFNARIKDIM 297
Query: 285 NKDNPWFEKCKLCNQRVYPNGSQKMAHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAF 341
NKD PW+ CK C ++V + +A C++C + V + +Y+LKL++ D + ++T F
Sbjct: 298 NKDEPWYSSCKKCYKKV--DVINNIAKCHHCGVENVDYQERYILKLEVFDKKERCYVTLF 357
BLAST of Spg008659 vs. ExPASy TrEMBL
Match:
A0A1S4AI89 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107797997 PE=4 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 4.3e-25
Identity = 95/342 (27.78%), Postives = 152/342 (44.44%), Query Frame = 0
Query: 39 VCNLGMGSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSS 98
V + G+KI A +FN IE N + +NK I NG + + N + +V+ E+E+ S
Sbjct: 42 VSDSSWGTKIHATLFNGYIELWKNYLQQNKICYIINGRINSANPNFQSVHNELEIGFKES 101
Query: 99 TTIEEIEEPFPLHKLTYNFIQISEMES------FGMTGKMI------------------- 158
T +EE F + NFI E FG+ K +
Sbjct: 102 TLVEESNSHFSTIGFSNNFISFDEASKCTNGTIFGLIEKTVTLWNDFSEINGQVLQKLID 161
Query: 159 ----------------GELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIP- 218
G S++TT S I+I P F + L++ + + +P
Sbjct: 162 EKPVVATCDIRKTSYRGNFSISTTYVS-IMINPKFEKAVALQKWHDYKKAKNIDISSLPN 221
Query: 219 -PSKKMERAKLVSIKDIIHGLVDDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQ 278
K K+ +KD +D Y I +I+NKD PW+ CK C ++V +
Sbjct: 222 IQLKNAREVKIEDMKDDSFDNKEDTYFKFNARIKDIMNKDEPWYSSCKKCYKKV--DVIN 281
Query: 279 KMAHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKK 337
+ C+ C + V + +Y+LKL++ D + ++T FE+ ++G V+ Y I Q
Sbjct: 282 NITKCHRCGVENVDYQERYILKLEVFDKKERYYVTLFESTRYLLGCDVTTYIQSISQ--N 341
BLAST of Spg008659 vs. ExPASy TrEMBL
Match:
M1DXI7 (Replication protein A1 OS=Solanum tuberosum OX=4113 PE=4 SV=1)
HSP 1 Score: 123.2 bits (308), Expect = 2.2e-24
Identity = 100/386 (25.91%), Postives = 172/386 (44.56%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G+KIQ +FN+ IET + + NK Y I G VN Y++V++E+E+ + +T I+E
Sbjct: 58 GTKIQTTLFNKHIETWKDFLKPNKSYYIAKGRYDRVNPNYSSVHKEVELAFTDNTVIKET 117
Query: 105 EEPFPLHKLTYNFIQI-----------------------------SEMESFGMTGKMI-- 164
+ K + F+ + S+ +T +++
Sbjct: 118 DHEVSTQKFSDGFLSLDAADNLPNGSVLDLICVLVSVNPIIQNATSKRREIVVTNELMEP 177
Query: 165 --------------------------------------GELSMATTMTSNILIEPDFVDS 224
G ++T S++LI P F +
Sbjct: 178 TTVTLWGDFAENDGAFLDKLKDDKPILGLCDVRVSIYKGRFGISTIPVSSVLINPIFQKA 237
Query: 225 KDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLV----DDLYCCIIGSIVEI 284
DL+ RE +++ + P+K M+RA V + I++GL+ D +Y +IV+I
Sbjct: 238 LDLRAWRE-IIEADNKDIIVAPTKAMKRAIEVPLDHILNGLLAESQDSMY-KFKATIVDI 297
Query: 285 VNKDNPWFEKCKLCNQRVYPNGSQKMAHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITA 344
+NKD PW+ CK C ++V ++ A C NCN D V++ +Y L+L++C G+ A +
Sbjct: 298 LNKDEPWYLSCKTCRKKV--KVIKEAAACTNCNIDNVEYAMRYCLRLEVCGGEKRAQVVL 357
Query: 345 FEAAEVIVGSSVSHYATQILQMKKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGH 357
FEAA ++G KKE+ YRN +L++ K + FLVR+D R
Sbjct: 358 FEAANNLLGC-------------KKEECHYYRNLVLSKDKQFNFLVRIDLTDANPRRS-- 417
BLAST of Spg008659 vs. ExPASy TrEMBL
Match:
M1DE88 (Replication protein A1 OS=Solanum tuberosum OX=4113 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 2.4e-23
Identity = 74/247 (29.96%), Postives = 132/247 (53.44%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G+KIQA +FN+ IET + + RNK Y I G + ++N Y++V++E+E+T + +T I+E
Sbjct: 98 GTKIQATLFNKHIETWKDSLKRNKSYYIAKGWLDSINPNYSSVHKEVELTFTDNTIIQET 157
Query: 105 EEPFPLHKLTYNFIQISEMESFGMTGKMIGELSMATTMTSNILIEPDFVDSKDLKERREL 164
HK + F+ + + G ++ + +L+ + V +RRE+
Sbjct: 158 THAVSTHKFSDGFLSLEHADKL-PNGSILDLIC--------VLVSVNPVVQNANSKRREI 217
Query: 165 LLDHTYMSTF--------IPPSKKMERAKLVSIKDIIHGLVDDLYCCII---GSIVEIVN 224
++ + I P++ M RA V++ +I+ GL D C+ +I +I+N
Sbjct: 218 VVTNQLREIIKADNKDITIMPTEVMRRAIEVTLDNILDGLFADSEDCMYKFKATIEDILN 277
Query: 225 KDNPWFEKCKLCNQRVYPNGSQKMAHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITAFE 280
KD PW+ CK C+++V + A CNNCN V++ +Y ++L++CDG+ A + FE
Sbjct: 278 KDEPWYSSCKKCHKKV--RYIEDTATCNNCNSQNVEYEMRYCVRLEVCDGERRAKVILFE 333
BLAST of Spg008659 vs. ExPASy TrEMBL
Match:
M1DP79 (Replication factor A OS=Solanum tuberosum OX=4113 PE=4 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 4.1e-23
Identity = 100/398 (25.13%), Postives = 172/398 (43.22%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G K+QA +FN+ I+T + + NK Y I G + VN Y +V++EIE+T++ +T I++
Sbjct: 33 GIKLQATLFNKHIDTWKDFLKTNKTYYIAKGLLDRVNPNYTSVHKEIELTITDNTIIKDS 92
Query: 105 EEPFPLHKLTYNFIQISEMESFG-----------------------------MTGKMI-- 164
+ H + F+ + E +T +++
Sbjct: 93 DHVVSTHNFSNGFVSLEHAEKLPNGAIFDLICVLVTVNPIIVKGDSKRREIVVTNELMEC 152
Query: 165 --------------------------------------GELSMATTMTSNILIEPDFVDS 224
G ++T S++LI P F +
Sbjct: 153 TTVTLWGDFAENDGAFLEKLKDDQPILGLCDVRVSIYKGTFGISTIPVSSVLINPIFQKA 212
Query: 225 KDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLVDDLYCCII---GSIVEIV 284
DL+ RE++ T PSK M +A V++ +I+ G + D + IV+I+
Sbjct: 213 LDLRAWREVIKAEKKPIT-TTPSKVMRKATEVTLLNIMDGTLADTQEALYKFKAKIVDIL 272
Query: 285 NKDNPWFEKCKLCNQRVYPNGSQKMAHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAF 344
N + PW+ CK C+++V Q C NCN ++ +Y L+L++CD + A +T F
Sbjct: 273 NIEEPWYSSCKQCHKKV--QVKQDTVTCPNCNIQNGEYEMRYSLRLEVCDEEQRARVTLF 332
Query: 345 EAAEVIVGSSVSHYATQILQMKKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHF 363
+AA++++G +V Y +K E+S YRN + ++ K +KFLVR+D
Sbjct: 333 DAAQMLLGCTVEDYIK--TTSEKNEESMYYRNLVFSKDKEFKFLVRID--MNNSNPCRSL 392
BLAST of Spg008659 vs. TAIR 10
Match:
AT5G61000.1 (Replication factor-A protein 1-related )
HSP 1 Score: 47.8 bits (112), Expect = 2.2e-05
Identity = 42/192 (21.88%), Postives = 92/192 (47.92%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G++IQA MFN+ + K Y I G++K N ++ V + EMTL+ ++ +EE
Sbjct: 228 GTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 287
Query: 105 --EEPFPLHKLTYNFIQISEMESFGMTGKMIGEL----SMATTMTSNILIEPDFVDSKDL 164
EE F + + +NF+ I E+ + ++I + S++ TM+ + + + +D+
Sbjct: 288 SSEEMF-IPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDI 347
Query: 165 ---KERRELLLDHTYMSTFIPPSKKM----ERAKLVSIKDIIHGLVDDLYCCIIGSIVEI 224
E R+ ++ + +++ +++ +++IK + G + I +
Sbjct: 348 TLADESRKTVVVSLWNDLATGIGQELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVV 407
BLAST of Spg008659 vs. TAIR 10
Match:
AT5G08020.1 (RPA70-kDa subunit B )
HSP 1 Score: 44.7 bits (104), Expect = 1.9e-04
Identity = 34/127 (26.77%), Postives = 63/127 (49.61%), Query Frame = 0
Query: 45 GSKIQAVMFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI 104
G++IQA MFN + K Y I G++K N ++ V + EMTL+ ++ +EE
Sbjct: 204 GTQIQATMFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 263
Query: 105 --EEPFPLHKLTYNFIQISEMESFGMTGKMIGELSMATTMTSNILIEPDFVDSKDLKERR 164
EE F + +NF+ I E+ ++ +I + + +++ + I D++ + +R
Sbjct: 264 SNEEMF-TPETKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRK-NDNEMIPKRD 323
Query: 165 ELLLDHT 170
L D T
Sbjct: 324 ITLADET 328
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG5584663.1 | 2.2e-31 | 31.38 | hypothetical protein H5410_045097 [Solanum commersonii] | [more] |
XP_015160730.1 | 2.3e-28 | 28.09 | PREDICTED: replication protein A 70 kDa DNA-binding subunit D-like [Solanum tube... | [more] |
XP_020262698.1 | 6.6e-28 | 28.50 | uncharacterized protein LOC109838687 [Asparagus officinalis] | [more] |
KAG5574299.1 | 1.9e-27 | 27.88 | hypothetical protein H5410_054433 [Solanum commersonii] | [more] |
XP_020242959.1 | 2.5e-27 | 27.35 | replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis] | [more] |
Match Name | E-value | Identity | Description | |
Q9FME0 | 3.1e-04 | 21.88 | Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=37... | [more] |
Match Name | E-value | Identity | Description | |
A0A1S4BAI4 | 8.7e-26 | 26.56 | replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=... | [more] |
A0A1S4AI89 | 4.3e-25 | 27.78 | replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=... | [more] |
M1DXI7 | 2.2e-24 | 25.91 | Replication protein A1 OS=Solanum tuberosum OX=4113 PE=4 SV=1 | [more] |
M1DE88 | 2.4e-23 | 29.96 | Replication protein A1 OS=Solanum tuberosum OX=4113 PE=4 SV=1 | [more] |
M1DP79 | 4.1e-23 | 25.13 | Replication factor A OS=Solanum tuberosum OX=4113 PE=4 SV=1 | [more] |