Spg008617 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008617
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic
Location	scaffold10: 32538229 .. 32543517 (-)
RNA-Seq Expression	Spg008617
Synteny	Spg008617

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTCCAAGTTAAGCCAACTTATGGGAAAGGTAACGGCAACCACAAGATGCCGCAGCGACTTACACTTCACAAGCAACCAAAGCTAAAACCTTTTATCCTTTTCTTCCTTCCTTGTGGCTGTGGCTCTTTCTTCTCTTCACTTGCTCGCACAGCTTTCTCTCCCTTTCTCCGGTCGACATTAATGGCGGCCAAGCTTCTACCATCTCATCTCTATCCTCTTCCTTCCCCCTCTCTCCCTTCCAAATCCTTCTCCGCCGCGGACCTAACTCCGCGGCCATGCTTCGCCGGAGCTCGCACTCATTTCCGCCCGCAGAGATCGGTATCGGTGAGAGTCACTGCGGAGCCGCTCATCGCCCTCCAAGACCACCACAACTCCGCCTTCCTCCTCGCTGAGAGCGTCGGCTATTCCATGGCGAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTGTGGTCGCTCATCAAGCGATCTGTGAAATCCAAGGTTATTTATCAAGTCACCTAAGATGCAATTCGAATCCGTCGCTCTGTTTTTTCTTTTTTTCTTCCTCTGTTTCTGTTTGTGTAATCGGTTGAATCGCATCGATTAGGTTGTGAAGAAGACATTCGTCGGCGAAGGAGAAGCTAAGAACGCGCCGAATCAGATTGCTGGAGAGATCCTGTCGTTTTTCACTCGCAATAACTTCCAAGTCACCGACAGAGGAGAAACCATAACGTAAGGCGATTATCTCTTGGAATTGGTACAATTTTGTGATTCCTGTTTCTGAGTGTTTGGTTTAATCGCGAAGTATTGATTTAGGAGGTTTGATTGATGTTTGATTGTGAAGGTTTGAAGGAACGATGGTGCCGAGTCGAGGCCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCCAGCGTCGCCCTCGTTCTCACCATTACATATCCAGATTTTGGCAACAATTGGTTCTGGATTAGCAGCTTGAGTCCCTTGGCGTAAGTACTACTGAACTTCTCTCCTATGCCTTGAAACTTTTTGTTGAAACTTTCTTGGTTGCTCAAGTTCCACGACTGTGCGGACTTGAATCTTCCAAGACTGAGTTTCGAATCATTTTGGGCTTCTGGCTCAAAGATTGGGCCTGGGCCAATTTAGAATGAGCCCAAAAGGTGAGACTTGAAGGGCCCATCAAGGCATTTGATGGATTAGACTCAAAGGATCAAGTTCACTACCCAATCATAAACTCAGTATTAAAAAATATTTATAAATTATTATAAAATAGATAAATGCCATATTCTTATGGTGTAGGGAGTAATTCTACTTTTTCATTGAAGTTTTGGGTTATGATTTTGTTTAGATATTTAATTTTGGTTTAGTCTTCAAACTTTATAAAATGAAATGATCCCCAAGACCAAACCATTAGATCATCCTACATTATTAAAACGAGCATCGCTCAGCGGCAATTGACATGTACCCACGACCAAGAGGTCAAATGTTCAAATTCTCCCACCCTCAAATGTTGTTGAACTAAAAAAAAAAGTCAATCCTACATGATAAAATAAATTCATTTTCTTTCACTTTTTTTTATGACAATATGTGGAGTGAGGAATTCGAACCACAAACCTCTTAGTTGAGCTATACTCAGTTAGCCATTCATTTTCTTTCCCTTGCCACTACAACATTCAAGATCTAAATAGTGTCGTTTATATAATTTGAAAAGACCATTGGATTAAAATCTTCATTCAATTGACAAATATGCCACAAAATGATGCAACCACATCATTTTTAAAGCCATTGAAGGCAAGCTCTTGTAATGGCATAAATCTTTCACACTTCGAAACTAAATAGAATCTTAATCCATACTTCTTGGATAAAAAGTGCCACCTTTTTCTTATCTATGCAGGTAGAAATTTGTAAAAGTTTCTAACAAATTAAACGAAAAACAATTTAGCTTCAAGTAATAAGTTTGAATAACATTTTTAACAAAGCCTCAATAATATCATAAACAGTTCTTCACAATCCATCTCTTTTAAACCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAATCAAATTGAGATGGAGATTCATTACATTACAACACCTCAGAAGCTAATCTGAAGCTCTTTGAAAACTGCAGTGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGCAGAAGATGGAAGCCTTGGGGAGATTATTGTTCAAGGAGACGACCAGCAAGTAGAGCAAATGAGAAAGGAACTTCAGTTGAGTGAAAAAGGCATGGTCTATGTCAAAGGCATTTTTGAGCAATGATTATTACTACTTTATCTGTTTTTCTTTTCTCTCTTTACCATAGTTGAAGGAGAATAATCTTCATGAGTCACATCTAGCACCCAAATGCTAAAAACTCAGTACAACAATTTTCCAACACATGAATCATACAAATACATCAAAATTGAATGTTTGCCCCCACTTTCTTTGTCCTTCCACTCCAACAGTATGGTGGTGAATCTAATCTATCTTTCACTCATTCAGTCAAATTATTCAGATTCATTCATGCAGTGTTCTCACTGCAAAAAGATTTCTAAAATCCCAAAGGAATTTTTGAGTAAAAAGAAACAGAACATGTCTTGCAACAAATCCTTTGCCATTATCTGCTTTAAATAAAAGTCGAGGGTCTAGAACGTCTGTGTATTACCTCAAAAAGAAGAGATTGGTTTCTTTAACCGATCAAGAGCTTGTTCTCATCCAAAAAGGTGTAGGTGGGTACCTCCAAATTGTAGGGTGCTGGCCCTTTGCGGATCCTGCCAGAGACGTCGTAATGAGAACCGTGGCATGGGCAAAACCACCCGCCGTAGTCACCAGCATTTGGCAAGGGAATGCAGCCAAGATGTGTGCAGACGCCAATCACAATAAGCCATTCTGGATTTTTAACTCTCTCCTCATCCTGCTGTGGGTCACGAAGAGATCCAACGTCCACACTATTTGCTAACTTGATGTCGTCCTCAGTTCGTCGCCTGATGAATACTGGCTTTCCACGCCACTTAACCGTCACGGTGGAACCAGGCTCGATGCTTGAAAGGTCAACCTCAAGTGAGGCCAGGGCAAGAACATCCTTACTGGCTGACATGCTAAGAACAAACTTGAGAACAAGGAGACGGATCAAAGAAGCATAGACAAACCGACCACCTGACAATACAAAATAAGCAAATGCACGCTTGCTGGGGTCACCAGGAGGAAATCGCTCATGGTTGTAATCATCATAGACTATCTTTGAAGAAGGGTTCTTAATGGCAGCTACAGTTGCAGGAATATCCAGAATTAAGCCATCATCCTTTGTCGAGGTCAATGCATCAGAAGCAAAACCTAGCAGAGAGAGAGAGAGTCATTTCCAAAAATCACGAAACAACACCAAAGTGAAAAGAAATAATCATGTATAAGGTATTGAACCACAAATTATAATTGAAAAGCAATCATCTAGGACAGAATGCTCAACTCTAAACTATTTATATCTTACCAATATTTCTATCCGCGACTTTCATTAAGAGCTAGAGAGTAATACCACATAATTAATCATGTGCATAGAGGAGCATTTACAAATTAATGTGCATACAGGAGGAATCTGTATAAACATACTGAACGAAAAAGTCCTGTCCAGCTAATCCGTGTATTCTTTCATTTTTTCTTAATTAAAGGTTGGTTCTTAAAATAATAATAAAAAAATAAAAATAAGCTAATCAGCAGTTCCCACGATTGGCTGTGCCACAGTAGCATAAGCATCTTAATAAAATTTGATCTGAATTAGTTGTTCCTTAAACAAGTAGTTTCAACGTATTTGTTCTTACTCGATTTATGTTGCCCGATTTTTGGAGCAAAGTCTAAGGATTTACCATGTAAGGTTGGAAAAAATCATCTTCAGGGCCCATGGAATAGGATTACAGTTTTTCAGTCTTTTTAAGCAGAAAAGTTTGAAGCTATTTCATAAAGGGAATAGGGATTATCTTTACCCAGTGCATAAGAGATGGCATGATGCAATTTTTCTAGGAGCGTGGTTTCATTTTTTCTTATTCTAATTCTACATCATTTCGTACAAGTAAGAGGATTAATTATCCTCATACCTTCCTATCCTGTCTCTTAAATTAATTTATTAAAAACGTTTCTCATGGAAAAATATAAAATACTCCTAAGCAAATGTTGTTTATAACATAATCAAATTTAAGCAATTGATCAAAATTCTTCACAACAGTAACAAAAGTACTCAACAATGGGAAGACAATGGCTTAAACTTCGTAGATAACAGCCATACTCTTTCTACACCAATAGACTATACCCAACGCATGGCAAAAAAAATCTGGTAATGGAGATTCCATATTGACATTTTGTTTCTTGTTTCAAAAAAGATTCCATATTGACATTGGTGAGTTTTTACAAGAATCAATGCAAAACTTTCTAGGTACAGAAAATGTGGACATTCACACTAAAACTTCTGTACTAGAAGAAAAAATCTCGGCAATATAGTATATGAAAAGTATTATCATATAGTTTTCAATGGAAATAACAAAAACAACCCAAAATAAAGTTGGAAGTCTGAAAACAAACGGTGGAAGATTTACAGATGAACGAAGAAGAAGCGATTGCTTCAATCGTTAAAATGTCCCGAAAGTACCGGTAAACAACTTTCACATTTTGATATTAATTTCAAAATGAGAAACTAATATGCAAAAACATGATTCAAAATCATCAAAGCAATCCAACAGTGGATCAAGAAAGACGAATATCGATTCCCACCTACGGCTAAACAGGATAATAGCAACACAAGCAAGTGAAGAAACAAACCCTAAAAAACGCCATAAATCGACAACGAGCAGGAAGAACAAAAAAAAAAATCAGAAATCAAGAAGAAAGCTCTAACCTCTACAATTGCGATCAAAGCGAGGACCGAAGGGGAAGGTGCTGAAGGAACCGACGGATCTGAAATCGTTGGAAGGGGCGGAATCACCGCCATCAGCGATCTTGTGAGAAGAGGCAATAGTGGGCCTGAAATGCGAAGAAGAAGAGAGTGACGAAAGCCTTCGAGCCGCAATCCTCAACATCTTCGTCGACCTTTTGGTTATGCAGAAATGATTTGAGATTGAGAAGAAGGCTTCGATTTCGATGGATTTTGAGAATTCAAAAGGGAAGGAGGCGATAGAAGAACAGACCCTTTCCCCGATCCGCAAAGGGTAAGCGATAAATTTGACCTCCAACTTGCTTCGATTCAGCTATGGTTATACTTGTTAAT

mRNA sequence

ATGCCGCAGCGACTTACACTTCACAAGCAACCAAAGCTAAAACCTTTTATCCTTTTCTTCCTTCCTTGTGGCTGTGGCTCTTTCTTCTCTTCACTTGCTCGCACAGCTTTCTCTCCCTTTCTCCGGTCGACATTAATGGCGGCCAAGCTTCTACCATCTCATCTCTATCCTCTTCCTTCCCCCTCTCTCCCTTCCAAATCCTTCTCCGCCGCGGACCTAACTCCGCGGCCATGCTTCGCCGGAGCTCGCACTCATTTCCGCCCGCAGAGATCGGTATCGGTGAGAGTCACTGCGGAGCCGCTCATCGCCCTCCAAGACCACCACAACTCCGCCTTCCTCCTCGCTGAGAGCGTCGGCTATTCCATGGCGAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTGTGGTCGCTCATCAAGCGATCTGTGAAATCCAAGGTTGTGAAGAAGACATTCGTCGGCGAAGGAGAAGCTAAGAACGCGCCGAATCAGATTGCTGGAGAGATCCTGTCGTTTTTCACTCGCAATAACTTCCAAGTCACCGACAGAGGAGAAACCATAACGTTTGAAGGAACGATGGTGCCGAGTCGAGGCCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCCAGCGTCGCCCTCGTTCTCACCATTACATATCCAGATTTTGGCAACAATTGGTTCTGGATTAGCAGCTTGAGTCCCTTGGCTGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGCAGAAGATGGAAGCCTTGGGGAGATTATTGTTCAAGGAGACGACCAGCAAGTAGAGCAAATGAGAAAGGAACTTCAGTTGAGTGAAAAAGGCATGGTCTATGTCAAAGGCATTTTTGAGCAATGA

Coding sequence (CDS)

ATGCCGCAGCGACTTACACTTCACAAGCAACCAAAGCTAAAACCTTTTATCCTTTTCTTCCTTCCTTGTGGCTGTGGCTCTTTCTTCTCTTCACTTGCTCGCACAGCTTTCTCTCCCTTTCTCCGGTCGACATTAATGGCGGCCAAGCTTCTACCATCTCATCTCTATCCTCTTCCTTCCCCCTCTCTCCCTTCCAAATCCTTCTCCGCCGCGGACCTAACTCCGCGGCCATGCTTCGCCGGAGCTCGCACTCATTTCCGCCCGCAGAGATCGGTATCGGTGAGAGTCACTGCGGAGCCGCTCATCGCCCTCCAAGACCACCACAACTCCGCCTTCCTCCTCGCTGAGAGCGTCGGCTATTCCATGGCGAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTGTGGTCGCTCATCAAGCGATCTGTGAAATCCAAGGTTGTGAAGAAGACATTCGTCGGCGAAGGAGAAGCTAAGAACGCGCCGAATCAGATTGCTGGAGAGATCCTGTCGTTTTTCACTCGCAATAACTTCCAAGTCACCGACAGAGGAGAAACCATAACGTTTGAAGGAACGATGGTGCCGAGTCGAGGCCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCCAGCGTCGCCCTCGTTCTCACCATTACATATCCAGATTTTGGCAACAATTGGTTCTGGATTAGCAGCTTGAGTCCCTTGGCTGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGCAGAAGATGGAAGCCTTGGGGAGATTATTGTTCAAGGAGACGACCAGCAAGTAGAGCAAATGAGAAAGGAACTTCAGTTGAGTGAAAAAGGCATGGTCTATGTCAAAGGCATTTTTGAGCAATGA

Protein sequence

MPQRLTLHKQPKLKPFILFFLPCGCGSFFSSLARTAFSPFLRSTLMAAKLLPSHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIALQDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKNAPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTITYPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ

Homology

[Close]

BLAST of Spg008617 vs. NCBI nr
Match: XP_023550037.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473.4 bits (1217), Expect = 1.5e-129
Identity = 238/259 (91.89%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 46  MAAKLLPSHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIALQ 105
           MAAK+LPSHLYPLPSPSLP  SFSA DLTPRPCF G RTHFRPQRSV+VRV  EPL+A Q
Sbjct: 1   MAAKILPSHLYPLPSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 106 DHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKNA 165
           DHHNSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV EGE+K A
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 166 PNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTIT 225
           PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 226 YPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 285
           +PD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 286 KELQLSEKGMVYVKGIFEQ 305
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Spg008617 vs. NCBI nr
Match: XP_022938901.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita moschata] >KAG6579098.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 468.0 bits (1203), Expect = 6.2e-128
Identity = 236/259 (91.12%), Postives = 241/259 (93.05%), Query Frame = 0


Query: 46  MAAKLLPSHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIALQ 105
           MA K LPSHLYPLPSPSLP  SFSA DLTPRPCF   RTHFRPQRSV+VRV  EPL+A Q
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 106 DHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKNA 165
           DHHNSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV EGE+K A
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 166 PNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTIT 225
           PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 226 YPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 285
           +PD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 286 KELQLSEKGMVYVKGIFEQ 305
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Spg008617 vs. NCBI nr
Match: KAG7016624.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 464.9 bits (1195), Expect = 5.2e-127
Identity = 235/259 (90.73%), Postives = 240/259 (92.66%), Query Frame = 0


Query: 46  MAAKLLPSHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIALQ 105
           MA K LPSHLYPLPSPSLP  SFSA DLTPRPCF   RTHFRPQRSV+VRV  EPL+A Q
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 106 DHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKNA 165
           DH NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV EGE+K A
Sbjct: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 166 PNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTIT 225
           PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 226 YPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 285
           +PD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 286 KELQLSEKGMVYVKGIFEQ 305
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Spg008617 vs. NCBI nr
Match: XP_022992736.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 463.4 bits (1191), Expect = 1.5e-126
Identity = 233/259 (89.96%), Postives = 240/259 (92.66%), Query Frame = 0


Query: 46  MAAKLLPSHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIALQ 105
           MA K LPSHLYPL SPSLP  SFSA DLTPRPCF G RTHFRPQRS++VRV  EPL+A Q
Sbjct: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60

Query: 106 DHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKNA 165
           D HNS FLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV EGE+K A
Sbjct: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 166 PNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTIT 225
           PNQ AGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 226 YPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 285
           +PD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240

Query: 286 KELQLSEKGMVYVKGIFEQ 305
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Spg008617 vs. NCBI nr
Match: XP_038874658.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa hispida])

HSP 1 Score: 449.9 bits (1156), Expect = 1.7e-122
Identity = 233/260 (89.62%), Postives = 239/260 (91.92%), Query Frame = 0


Query: 46  MAAKLLP-SHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIAL 105
           MAAKLLP SHL P     LPS SFSA DLTPRPCF   RTHF+P RSV+VRV AEPL+ L
Sbjct: 1   MAAKLLPSSHLCP-----LPSNSFSAVDLTPRPCFGRPRTHFKPHRSVTVRVNAEPLVVL 60

Query: 106 QDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKN 165
           QDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKT V EGE+K 
Sbjct: 61  QDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTLVSEGESKK 120

Query: 166 APNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTI 225
            PNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASV LVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 226 TYPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQM 285
           T+PDFGNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240

Query: 286 RKELQLSEKGMVYVKGIFEQ 305
           RKELQLSEKGMVYVKGIFEQ
Sbjct: 241 RKELQLSEKGMVYVKGIFEQ 255

[Close]

BLAST of Spg008617 vs. ExPASy Swiss-Prot
Match: Q9LSE4 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB1 PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.0e-80
Identity = 155/201 (77.11%), Postives = 172/201 (85.57%), Query Frame = 0


Query: 105 QDHHNSAFLLAESV-GYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAK 164
           + + NS  L+ E+  GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV   + K
Sbjct: 66  EQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFV-VNDVK 125

Query: 165 NAPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLT 224
             P Q+AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLT
Sbjct: 126 KEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLT 185

Query: 225 ITYPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQ 284
           IT PDFGNNWF+I  LSPLAG YYW KASRKEEIKVKM+V   G L EI+VQGDD QVE+
Sbjct: 186 ITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEE 245

Query: 285 MRKELQLSEKGMVYVKGIFEQ 305
           MRKELQL+EKGMVYVKG+FE+
Sbjct: 246 MRKELQLNEKGMVYVKGLFER 265

[Close]

BLAST of Spg008617 vs. ExPASy TrEMBL
Match: A0A6J1FEF5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111444976 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 3.0e-128
Identity = 236/259 (91.12%), Postives = 241/259 (93.05%), Query Frame = 0


Query: 46  MAAKLLPSHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIALQ 105
           MA K LPSHLYPLPSPSLP  SFSA DLTPRPCF   RTHFRPQRSV+VRV  EPL+A Q
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 106 DHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKNA 165
           DHHNSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV EGE+K A
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 166 PNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTIT 225
           PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 226 YPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 285
           +PD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 286 KELQLSEKGMVYVKGIFEQ 305
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Spg008617 vs. ExPASy TrEMBL
Match: A0A6J1JUD8 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488985 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 7.4e-127
Identity = 233/259 (89.96%), Postives = 240/259 (92.66%), Query Frame = 0


Query: 46  MAAKLLPSHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIALQ 105
           MA K LPSHLYPL SPSLP  SFSA DLTPRPCF G RTHFRPQRS++VRV  EPL+A Q
Sbjct: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60

Query: 106 DHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKNA 165
           D HNS FLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV EGE+K A
Sbjct: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 166 PNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTIT 225
           PNQ AGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 226 YPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 285
           +PD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240

Query: 286 KELQLSEKGMVYVKGIFEQ 305
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of Spg008617 vs. ExPASy TrEMBL
Match: A0A0A0KRU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 2.1e-121
Identity = 229/260 (88.08%), Postives = 241/260 (92.69%), Query Frame = 0


Query: 46  MAAKLLP-SHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIAL 105
           MAAKLLP SHLYP     LPS SFSA DL+PRPCFA  RTHF+P RSV+VRV+AEPL+AL
Sbjct: 1   MAAKLLPSSHLYP-----LPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVAL 60

Query: 106 QDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKN 165
           QDH+NSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV E  +K 
Sbjct: 61  QDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKK 120

Query: 166 APNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTI 225
            PNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASV LVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 226 TYPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQM 285
           TYPDFGNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEI+VQGDDQQ++QM
Sbjct: 181 TYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQM 240

Query: 286 RKELQLSEKGMVYVKGIFEQ 305
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of Spg008617 vs. ExPASy TrEMBL
Match: A0A5A7VG78 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00110 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 9.7e-119
Identity = 225/260 (86.54%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 46  MAAKLLP-SHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIAL 105
           MAAKLLP SH YP     LPS SFSA DL+PRPCF   RTHF+P RSV+V+V AEPLIAL
Sbjct: 1   MAAKLLPSSHFYP-----LPSNSFSAVDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60

Query: 106 QDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKN 165
           Q+H+NSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV E E+K 
Sbjct: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120

Query: 166 APNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTI 225
            PNQIAGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASV LVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 226 TYPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQM 285
           T+PDFGNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEIIVQGDDQQ++QM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQM 240

Query: 286 RKELQLSEKGMVYVKGIFEQ 305
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of Spg008617 vs. ExPASy TrEMBL
Match: A0A1S3CPE0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503108 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.3e-118
Identity = 225/260 (86.54%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 46  MAAKLLP-SHLYPLPSPSLPSKSFSAADLTPRPCFAGARTHFRPQRSVSVRVTAEPLIAL 105
           MAAKLLP SH YP     LPS SFSA DL+PRPCF   RTHF+P RSV+V+V AEPLIAL
Sbjct: 1   MAAKLLPSSHFYP-----LPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60

Query: 106 QDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAKN 165
           Q+H+NSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV E E+K 
Sbjct: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120

Query: 166 APNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLTI 225
            PNQIAGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASV LVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 226 TYPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQM 285
           T+PDFGNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEIIVQGDDQQ++QM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQM 240

Query: 286 RKELQLSEKGMVYVKGIFEQ 305
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of Spg008617 vs. TAIR 10
Match: AT3G26710.1 (cofactor assembly of complex C )

HSP 1 Score: 301.6 bits (771), Expect = 7.1e-82
Identity = 155/201 (77.11%), Postives = 172/201 (85.57%), Query Frame = 0


Query: 105 QDHHNSAFLLAESV-GYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVGEGEAK 164
           + + NS  L+ E+  GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV   + K
Sbjct: 66  EQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFV-VNDVK 125

Query: 165 NAPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVALVLT 224
             P Q+AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLT
Sbjct: 126 KEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLT 185

Query: 225 ITYPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQ 284
           IT PDFGNNWF+I  LSPLAG YYW KASRKEEIKVKM+V   G L EI+VQGDD QVE+
Sbjct: 186 ITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEE 245

Query: 285 MRKELQLSEKGMVYVKGIFEQ 305
           MRKELQL+EKGMVYVKG+FE+
Sbjct: 246 MRKELQLNEKGMVYVKGLFER 265

The following BLAST results are available for this feature:

BLAST of Spg008617 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550037.1	1.5e-129	91.89	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_022938901.1	6.2e-128	91.12	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
KAG7016624.1	5.2e-127	90.73	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_022992736.1	1.5e-126	89.96	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_038874658.1	1.7e-122	89.62	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa ...	[more]

BLAST of Spg008617 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSE4	1.0e-80	77.11	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop...	[more]

BLAST of Spg008617 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEF5	3.0e-128	91.12	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A6J1JUD8	7.4e-127	89.96	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A0A0KRU8	2.1e-121	88.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1	[more]
A0A5A7VG78	9.7e-119	86.54	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuw...	[more]
A0A1S3CPE0	1.3e-118	86.54	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis ...	[more]

BLAST of Spg008617 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26710.1	7.1e-82	77.11	cofactor assembly of complex C	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	CCB1	coord: 124..290 e-value: 1.5E-54 score: 183.9
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 59..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008617.1	Spg008617.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane