Spg008599 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008599
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 36378206 .. 36378550 (+)
RNA-Seq ExpressionSpg008599
SyntenySpg008599
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCAGCTTTGGCTTATCTAATTTTTGCCATCTTCTTTGCATCCATCTTCCCGAGCTCGCCGTCGAGAGCGGCCCCCGCCGCAAGCTACAGTAACTCTTACCCTCCTCCACCGCCGCCAAAGAAGCTCCACCGTCCACTCGTCTTCCGTCGCCACCACAGCTCTCCTCCACCGTCGCCGGTGGCACAGGAGTCTCCAGCGAAACTTCTCCGTCGTGTAAATGCTGAGGGTAACGATAAGTGTTCGAAAGCACGTGGAAATGGAGATAAAGATATAAAGCAACCGAATAAAAGCCCTTGGCCAAAGTGCCCCTTTTCTAAATCGCCACCACTACCATTCTAG

mRNA sequence

ATGGCGCCAGCTTTGGCTTATCTAATTTTTGCCATCTTCTTTGCATCCATCTTCCCGAGCTCGCCGTCGAGAGCGGCCCCCGCCGCAAGCTACAGTAACTCTTACCCTCCTCCACCGCCGCCAAAGAAGCTCCACCGTCCACTCGTCTTCCGTCGCCACCACAGCTCTCCTCCACCGTCGCCGGTGGCACAGGAGTCTCCAGCGAAACTTCTCCGTCGTGTAAATGCTGAGGGTAACGATAAGTGTTCGAAAGCACGTGGAAATGGAGATAAAGATATAAAGCAACCGAATAAAAGCCCTTGGCCAAAGTGCCCCTTTTCTAAATCGCCACCACTACCATTCTAG

Coding sequence (CDS)

ATGGCGCCAGCTTTGGCTTATCTAATTTTTGCCATCTTCTTTGCATCCATCTTCCCGAGCTCGCCGTCGAGAGCGGCCCCCGCCGCAAGCTACAGTAACTCTTACCCTCCTCCACCGCCGCCAAAGAAGCTCCACCGTCCACTCGTCTTCCGTCGCCACCACAGCTCTCCTCCACCGTCGCCGGTGGCACAGGAGTCTCCAGCGAAACTTCTCCGTCGTGTAAATGCTGAGGGTAACGATAAGTGTTCGAAAGCACGTGGAAATGGAGATAAAGATATAAAGCAACCGAATAAAAGCCCTTGGCCAAAGTGCCCCTTTTCTAAATCGCCACCACTACCATTCTAG

Protein sequence

MAPALAYLIFAIFFASIFPSSPSRAAPAASYSNSYPPPPPPKKLHRPLVFRRHHSSPPPSPVAQESPAKLLRRVNAEGNDKCSKARGNGDKDIKQPNKSPWPKCPFSKSPPLPF
Homology
BLAST of Spg008599 vs. NCBI nr
Match: KAE8646677.1 (hypothetical protein Csa_023590, partial [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 7.5e-18
Identity = 63/101 (62.38%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 15  ASIFPSSPSRAAPAA-SYSNSYPPPPPPKKLHRPLVFRRHHSSPPPSPVAQESPAKLLRR 74
           AS  PSS S AA AA SY   YPPP P     RPL+F   HSS PPSP A+E PAK  RR
Sbjct: 1   ASFSPSSLSIAATAAPSYGIPYPPPLP-----RPLLFHNDHSSLPPSPAAEEYPAKSPRR 60

Query: 75  VNAEGNDKCSKARGNGDKDIKQPNKSPWPKCPFSKSPPLPF 115
           VN E  DKCS+A  NG+KD K PNK PWPKCP  KSPP PF
Sbjct: 61  VNGERKDKCSEAPRNGNKDAK-PNKDPWPKCPVPKSPPPPF 95

BLAST of Spg008599 vs. NCBI nr
Match: KAA0054906.1 (hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22694.1 hypothetical protein E5676_scaffold1163G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-17
Identity = 66/117 (56.41%), Postives = 75/117 (64.10%), Query Frame = 0

Query: 1   MAPALAYLIFAIFFA--SIFPSSPSRAAPA-ASYSNSYPPPPPPKKLHRPLVFRRHHSSP 60
           MAP LAYL  AIF A  S  PSS S +A A  S+   YPPP P     R L+F   HSS 
Sbjct: 1   MAPPLAYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLP-----RSLLFHNDHSSL 60

Query: 61  PPSPVAQESPAKLLRRVNAEGNDKCSKARGNGDKDIKQPNKSPWPKCPFSKSPPLPF 115
           P SP A+E PAK L+RVN E  DKC++A  NG+KD K  +K PWPKCP SKSPP PF
Sbjct: 61  PQSPAAEEYPAKPLQRVNGERKDKCTEAPRNGNKDAKS-SKDPWPKCPVSKSPPPPF 111

BLAST of Spg008599 vs. ExPASy TrEMBL
Match: A0A0A0KEF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 72/117 (61.54%), Postives = 76/117 (64.96%), Query Frame = 0

Query: 1   MAPALAYLIFAIFF--ASIFPSSPSRAAPAA-SYSNSYPPPPPPKKLHRPLVFRRHHSSP 60
           MAP LAYL  AI    AS  PSS S AA AA SY   YPPP P     RPL+F   HSS 
Sbjct: 1   MAPPLAYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLP-----RPLLFHNDHSSL 60

Query: 61  PPSPVAQESPAKLLRRVNAEGNDKCSKARGNGDKDIKQPNKSPWPKCPFSKSPPLPF 115
           PPSP A+E PAK  RRVN E  DKCS+A  NG+KD K PNK PWPKCP  KSPP PF
Sbjct: 61  PPSPAAEEYPAKSPRRVNGERKDKCSEAPRNGNKDAK-PNKDPWPKCPVPKSPPPPF 111

BLAST of Spg008599 vs. ExPASy TrEMBL
Match: A0A5D3DGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00110 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.1e-17
Identity = 66/117 (56.41%), Postives = 75/117 (64.10%), Query Frame = 0

Query: 1   MAPALAYLIFAIFFA--SIFPSSPSRAAPA-ASYSNSYPPPPPPKKLHRPLVFRRHHSSP 60
           MAP LAYL  AIF A  S  PSS S +A A  S+   YPPP P     R L+F   HSS 
Sbjct: 1   MAPPLAYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLP-----RSLLFHNDHSSL 60

Query: 61  PPSPVAQESPAKLLRRVNAEGNDKCSKARGNGDKDIKQPNKSPWPKCPFSKSPPLPF 115
           P SP A+E PAK L+RVN E  DKC++A  NG+KD K  +K PWPKCP SKSPP PF
Sbjct: 61  PQSPAAEEYPAKPLQRVNGERKDKCTEAPRNGNKDAKS-SKDPWPKCPVSKSPPPPF 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646677.17.5e-1862.38hypothetical protein Csa_023590, partial [Cucumis sativus][more]
KAA0054906.16.3e-1756.41hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KEF91.0e-2061.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1[more]
A0A5D3DGG93.1e-1756.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008599.1Spg008599.1mRNA