Spg008585 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008585
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description1-deoxy-D-xylulose 5-phosphate synthase family protein
Locationscaffold10: 29809674 .. 29813957 (+)
RNA-Seq ExpressionSpg008585
SyntenySpg008585
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACGACACATGACACCACCATCCCACAGAAGTGTGTCATGTTGTTGTACAACATATATAAGGGCCTGGATCTCAACCTTGGTCGGATAATTTGGAACAAGATCCTTGACTGCGGACACAAAAACGTGGGGAGACTTTTCTTCCCTAGCTTGATCACGAAGCTCTATAGACTTGCAGGAGTTGAGCCCAAGGCTCATGAGGAGAAGAAGGTTGCCAATACTTTCATTGGTTCGAACTTGATTAGAAAGCTCATTGCGAACTGTAGGCAGAAGGTGACCTCTCCTAAGAAGAAGGCATAACAGACTCTTCCAGCTTCAGTACCTCCAGAGCCTTCCACTGCGGCAAATGCGACTACAACTTGATAACGTGCATAGCGAGCTATTTTTCCCTATTCATTTTAGCTAGTCTTTGAGATTAAATTGGCAAAAATTATACATTTTAATATTCTATTTGTAGGAATTAATTATTGGAGATAAATCGAGAAAATGGAGTTGATCGGGTGTTCCAGACGCTAAAAGAGGCCAAGGAAATGGAAATGAATCAAAGTTGGAGGCTTACAAATGAGGCAAACCCAAGAGCTAGCGTCTTGACGCTAGTAATTTCCATTTTTTATTCTGGCGGTAAAGAGCACAACGTTGAGATTCTGTGACTATAGCGTCGAGACACTATCGATTTTTCCTTAAACAGAATAGTTGGCAATGGGACAATGTCGTGATGCTGTCCATAGCGTCTCGACGCTGTCGACAGAATCTTTATAAATAGAAAGCGATTTACTACGACCAAAGGGAGTCCATTTGATGCAATTTTAGCCCTAAATTCGACTAGAGACCTTATGTGGGAGCTGAAGCAAAGTGGAGGAGCAGGATTCAAGGCTAAGCTCGTGGAGATTGTGACGGGGACGTGCGGTTTCGGCGACAATAGTGTTTTTATCTCTTTTCTTCCCTTTCTTTAGTTGTTTTTAACGGCTTTTTCAGACTTAGCTTATGTAGACACCGTACTTGGTTCGACGAGTTTTTAATAATGTTTGAGTACCTCTAATATGTAATGTTAATTTTGTTTCTCGTTTAAAATGAAACCATAGCATAAAAAGTTTTAATTTCATTTTATTTTTAATTCTAAAGTTTAGTTGTAATTTTAATTTTAGTTATTTATTCATTTATTGTTTATTTATTGTTTATTATTATTATTATTTTCTTTTTCTTTTCTTTTTCCTTTTTTTTTCTCCACCCCACTCTCCTTCTTCCGCTATTCTTTCTCCCATTCCTATTCAAATGGAATTCATTCATGGCTACCCACCAATCCCTCATCCACCACTCCTCCCAAAATAGTTACTCTTTGTAGTATAAATAGAGGGAGTGAAGAGAAAGAAAGCCAAGAAGAAGGCATTGAGCATAAGCTTAGTTGAGAGAGTTTTTGAGGACGTGAGTTTAGAAAGCTTGAAAGAGTGACTTAGAGAGTTTTTTTAGAAGGATTTTTTGAGAGAGAAAGGAAGAGAGATTAAAGAAGGAAAAGGAAAAAAAGAGTTTAAGGAGAGTGAAAGAAAAAGAGAGGAAAGAAGGAGAAAGAGGAAAGTAAAAAAGGTGGGTCCCATTTTTTTCTCTTATTTTTAATTAAATCTTTATTTTACTATTATTATTATTATTATTATTATTATTATTAATTTCTCTCTCATTTATTTCACATTTACACTTTACCAACTTCATTTCATTTTTTTTGAACTTTCTAATTTATTTGTTTTTTTTCCCTTTCATTTTCCAATTTGCTTTAATCCAATCTTTAATTTTTCTTGGTCAATTTCAATGATTGTTATCATAATTGTTTTGAAATTAATGTTCTTTCCAAAGGGATTATCAAAACTGAGTAATGTGCCTTCGTGGAGTTCAACTCCCGTGCAGGCGTATGAAAATTCTCATTTTCCCTTTTAAAAAGAATTTACTCTTTGAATAATTTTCTTCTTTTACGTCCATTTGTTTTTTTAATTATTTATTGTATTTTTATTAAACATAATCATGCATTGCCCATGATGGAGTTAAATTCAATTCTTGAGTAACAAGTTTTCTTTACTTAAAGGGGAAATTAGACATGATTTATATTAAATTCGATAATCCAACTCATAATATCTAATCCTTACTTTATTTCTAAAGTTAAGGTAAGAACAAATGAGACATCTTGTTTTTATTTTGGTTTTTATTCTCATATTCATCATTTGTTTTTTTAAAAGAAAAGTAAAAAATGAAGGACCGTTTTTCTCATGTAATTGGACAGTATAAGATAATGTGGTAATCGTTTTTAAAACGGGCGTTGTAGGGTGCTAATACCTTCCCTACACTCAAACGACTCCCGAACCTAATTTCTGGTTTTCTAAGACTGTTTTTATTTTATTTTATTTTAAAGGTGACCAATCACACCTTCAATGATTGGTGGCGACTCCAATTTTCTTCTTAAAAAAATCCAAAAAAGGATGTTGGCCACTATGCGTCGCGATGACGTTGCGACAGCTTGGCAACTCCATTGGGGACTTTTGAGGGTCAAGCCATGAATATCTTTATTGTCCTTTAATTAAATTTTTCTTTAGGTCCCTTCGTTATTATTTTTGTTATTTATTTATTTATTTATTTTTCCTTACTTTATAATATGATTTGTTTGGCATATTGTTATTCACTTGTCTATTACCATCTTTTTATGTTGTAATTGTACTTTATCTTATTTATGTCATTCATTTGCATGTCATCTTATTAATCATGCATTTCACACACTTTCACTAGCCTCCTACCCAGGTTCTACCTTAGGACTAGACTCAGAGATTGAGTAGTGTGACCCTTGTGGAATTCCGATTCCCGTGCAGGTGCATGAAATTCTCCACTCAAGCCAACTACATCGTTAAACAGGTGGGTAAGCTTGGGGACCTGACGGGACCGTCGGAGGGTGTCAAATTCTCCTTAAGTAGTCAAATAAAATTTATAATCCACGGCACTACTACTATTTTTGTAGCAATAGCGGTCGGGGTCGAACACAGGTAAGGGGGATCTAGTAAGTGTAGAATTTCGTGCTTATGAAAACAGGGAGGTTTTTTATGATGAAGAACAAGCAAAAATAAAATAAAATAAAATAATTAAATGCTGAATTTTAAAAGACGGGGAATCAGCATGCAGAAGAGAAATTAGACGGGATCAATAACATAAAAAAGGGATCGTTGGATTGGGATTTATTATGTTTGATTCTAATTCATTGGCTACCTAGTTTCCTTTAATAATTATTCTAAATTGATTTCATTAGTCCGGTCAGTTTCTGGATTACTCGGAGGACCCCCCCTACACTAACCTGTGCTAATTAACTCGTTAATTGTGAATTTGGCAATTAACAATATTAATTAATATAAACTCTATCGCTCGCCACCGCTTATGCATAATGTAGCGACCATCCGAGACCTCTGCAACAGTTACTACTTATATCTAACTAGTTTATTAACAAGCAATTTTGCAATCACCTATTAAAACTAGTCGCTTTGGGATCGTGGGTCCGGAATTGTAAGAACTAAATTCAAATGCAATTTAAATCTAATTCCTACAACCTTTAACATGCATCCTAGGCCTATCAAGGGTCGTCTCGCGTAGAGAGTGGCTTGCCTCAACCTAGTGGCTATCTAAAAATAACTGATAGGATACACAAGCGGTAATCGCATAGGGCGTCAATCCTAATAGACTAGCCTCATGTATTGGTTTAAACGGGATAACATGCAAAACTCAATGAAAATACAACAAGAACAGAAGGTAAGAACCAGAAAACTCAGCCAATATTATTTAGAATCAAGACATAAATCCAATCCAACGATCTAAACGAGTTTAGCTACGCATAGATGAAGTAAAAGCAACAAATAACATAAAATAATCCATAGAATATGACCAAGAATGGTGTACAACAGTGCTGGAATGTAAAAGAGGCAAAGAAATTGTAAAAGGGACCAAAATTCTAACCTAACGGCGGACTAAAAACGAGGCTACATATATATAGAAAACACGTCGGCGTCGAGACGCCAAGGGCAATGTCTCCACTCCACGAACATCACACTTCGAACCGAATTTGCGTCGGCGTCTCGACGAGACGCCAGCCTCATATCTCGACTTGCTGCTTAATTTCTTAGTTTTGACTCGCTTCCTATCGGTTCAGGACTTCAATCTTCGGCTTTCGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGGTCTCTTCACCTCCTCGCTGTCCAAGACATCGAGATGGCTCCAAAACTCCTTAATTAG

mRNA sequence

ATGGCTACGACACATGACACCACCATCCCACAGAAGTGTGTCATGTTGTTGTACAACATATATAAGGGCCTGGATCTCAACCTTGGTCGGATAATTTGGAACAAGATCCTTGACTGCGGACACAAAAACGTGGGGAGACTTTTCTTCCCTAGCTTGATCACGAAGCTCTATAGACTTGCAGGAGTTGAGCCCAAGGCTCATGAGGAGAAGAAGGTTGCCAATACTTTCATTGGTTCGAACTTGATTAGAAAGCTCATTGCGAACTGTAGGCAGAAGCGTCTCGACGCTGTCGACAGAATCTTTATAAATAGAAAGCGATTTACTACGACCAAAGGGAGTCCATTTGATGCAATTTTAGCCCTAAATTCGACTAGAGACCTTATGTGGGAGCTGAAGCAAAGTGGAGGAGCAGGATTCAAGGCTAAGCTCGTGGAGATTGTGACGGGGACGTGCATGAAATTCTCCACTCAAGCCAACTACATCGTTAAACAGGTGGGACTTCAATCTTCGGCTTTCGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGGTCTCTTCACCTCCTCGCTGTCCAAGACATCGAGATGGCTCCAAAACTCCTTAATTAG

Coding sequence (CDS)

ATGGCTACGACACATGACACCACCATCCCACAGAAGTGTGTCATGTTGTTGTACAACATATATAAGGGCCTGGATCTCAACCTTGGTCGGATAATTTGGAACAAGATCCTTGACTGCGGACACAAAAACGTGGGGAGACTTTTCTTCCCTAGCTTGATCACGAAGCTCTATAGACTTGCAGGAGTTGAGCCCAAGGCTCATGAGGAGAAGAAGGTTGCCAATACTTTCATTGGTTCGAACTTGATTAGAAAGCTCATTGCGAACTGTAGGCAGAAGCGTCTCGACGCTGTCGACAGAATCTTTATAAATAGAAAGCGATTTACTACGACCAAAGGGAGTCCATTTGATGCAATTTTAGCCCTAAATTCGACTAGAGACCTTATGTGGGAGCTGAAGCAAAGTGGAGGAGCAGGATTCAAGGCTAAGCTCGTGGAGATTGTGACGGGGACGTGCATGAAATTCTCCACTCAAGCCAACTACATCGTTAAACAGGTGGGACTTCAATCTTCGGCTTTCGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGGTCTCTTCACCTCCTCGCTGTCCAAGACATCGAGATGGCTCCAAAACTCCTTAATTAG

Protein sequence

MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLAGVEPKAHEEKKVANTFIGSNLIRKLIANCRQKRLDAVDRIFINRKRFTTTKGSPFDAILALNSTRDLMWELKQSGGAGFKAKLVEIVTGTCMKFSTQANYIVKQVGLQSSAFGVILQARFNTIGSLHLLAVQDIEMAPKLLN
Homology
[Close]
BLAST of Spg008585 vs. NCBI nr
Match: PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-06
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 1  MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
          + TTH   + ++CV+LLY++  G  +N+GRII  +I  C  +  G LFFPSLIT++ R A
Sbjct: 24 LPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACAARKPGALFFPSLITRMCRNA 83

Query: 61 GVEPKAHEEK 71
                +EEK
Sbjct: 84 RAPYLVNEEK 93

[Close]
BLAST of Spg008585 vs. NCBI nr
Match: MBA0756372.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-06
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 1   MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
           M  ++ +TI  K ++LLY I     +N+G+II  KI DC  K  G ++FPSL+T L   A
Sbjct: 45  MHISYSSTISMKRILLLYTIMTERSINVGKIILKKIYDCARKKTGSVYFPSLVTSLCLRA 104

Query: 61  GVEPKAHEEKKVANTFIGSNLIRKLIANCRQ 92
            V+ +A+ +      +I ++ +  L+ N  +
Sbjct: 105 QVKAQANLKGLYVQGYITAHDLEMLVENVHE 135

[Close]
BLAST of Spg008585 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-05
Identity = 28/72 (38.89%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 1   MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
           + T+HD+T+ ++ + +LY I KG  +N+G++I  +I +C H+  G+LFF  LIT+  R A
Sbjct: 886 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61  GVEPKAHEEKKV 73
            V P  ++E  V
Sbjct: 946 NV-PMLNDEDPV 956

[Close]
BLAST of Spg008585 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-05
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 1   MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
           + TTH  T+ +  ++LLY++  G  +N+GR+I ++I  C  +  G LFFPSLIT+L R A
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  GVEPKAHEEK 71
                 +EEK
Sbjct: 117 RAPFLVNEEK 126

[Close]
BLAST of Spg008585 vs. NCBI nr
Match: XP_015385578.1 (drebrin-like [Citrus sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-05
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 1  MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKN--VGRLFFPSLITKLYR 60
          M TTH TT+ Q+ +++LY I +GL +++G II  +I DC  KN     L FPSLIT +  
Sbjct: 1  MPTTHTTTVSQERLVMLYVIVRGLPIDVGSIIEKEIRDCAMKNHKATALLFPSLITSICV 60

Query: 61 LAGVEPKAHEE 70
          ++GV   A +E
Sbjct: 61 VSGVRLDAKDE 71

[Close]
BLAST of Spg008585 vs. ExPASy TrEMBL
Match: A0A2P5CXU3 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113580 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.1e-07
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 1  MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
          + TTH   + ++CV+LLY++  G  +N+GRII  +I  C  +  G LFFPSLIT++ R A
Sbjct: 24 LPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACAARKPGALFFPSLITRMCRNA 83

Query: 61 GVEPKAHEEK 71
                +EEK
Sbjct: 84 RAPYLVNEEK 93

[Close]
BLAST of Spg008585 vs. ExPASy TrEMBL
Match: A0A7J9D6N4 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_020823 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-06
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 1   MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
           M  ++ +TI  K ++LLY I     +N+G+II  KI DC  K  G ++FPSL+T L   A
Sbjct: 45  MHISYSSTISMKRILLLYTIMTERSINVGKIILKKIYDCARKKTGSVYFPSLVTSLCLRA 104

Query: 61  GVEPKAHEEKKVANTFIGSNLIRKLIANCRQ 92
            V+ +A+ +      +I ++ +  L+ N  +
Sbjct: 105 QVKAQANLKGLYVQGYITAHDLEMLVENVHE 135

[Close]
BLAST of Spg008585 vs. ExPASy TrEMBL
Match: A0A803Q715 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 28/72 (38.89%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 1   MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
           + T+HD+T+ ++ + +LY I KG  +N+G++I  +I +C H+  G+LFF  LIT+  R A
Sbjct: 123 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 182

Query: 61  GVEPKAHEEKKV 73
            V P  ++E  V
Sbjct: 183 NV-PMLNDEDPV 193

[Close]
BLAST of Spg008585 vs. ExPASy TrEMBL
Match: A0A7J6FZ22 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_026421 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 28/72 (38.89%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 1   MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
           + T+HD+T+ ++ + +LY I KG  +N+G++I  +I +C H+  G+LFF  LIT+  R A
Sbjct: 886 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61  GVEPKAHEEKKV 73
            V P  ++E  V
Sbjct: 946 NV-PMLNDEDPV 956

[Close]
BLAST of Spg008585 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 1   MATTHDTTIPQKCVMLLYNIYKGLDLNLGRIIWNKILDCGHKNVGRLFFPSLITKLYRLA 60
           + TTH  T+ +  ++LLY++  G  +N+GR+I ++I  C  +  G LFFPSLIT+L R A
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  GVEPKAHEEK 71
                 +EEK
Sbjct: 117 RAPFLVNEEK 126

The following BLAST results are available for this feature:
BLAST of Spg008585 vs. NCBI nr
Match NameE-valueIdentityDescription
PON65869.11.0e-0642.86hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii][more]
MBA0756372.18.9e-0632.97hypothetical protein [Gossypium gossypioides][more]
KAF4375842.12.6e-0538.89hypothetical protein G4B88_026421 [Cannabis sativa][more]
PON59596.14.4e-0541.43hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
XP_015385578.14.4e-0543.66drebrin-like [Citrus sinensis][more]
BLAST of Spg008585 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg008585 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5CXU35.1e-0742.86Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A7J9D6N44.3e-0632.97Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_020823 PE=4 ... [more]
A0A803Q7151.3e-0538.89Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6FZ221.3e-0538.89Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_026421 PE=4 SV=1[more]
A0A2P5CEY22.1e-0541.43Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE... [more]
BLAST of Spg008585 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008585.1Spg008585.1mRNA