Spg008541 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008541
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 37144669 .. 37146069 (-)
RNA-Seq ExpressionSpg008541
SyntenySpg008541
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATGGGGAAACAAAAATTTGATGTAGGCTCCAGATTGGGGATTGATTTTCCAGATTTAAATGAACTCTACATCCCTCGAAGAAGAAGATCTCCCACTGCTGAAAACAGCCCTCCAATGTCTGCATTGAAGGCCGCCACTGTTCTGTTGGCGATGGCCTACTCTGTTACCGATATTCAAACCTTCTGCAATCGCAAATTGAAGAAATTTAGCAACACCCAGAAAAGGAAGAAGACTCTGAGAAATCTGAGGTAGCTACTAAGAAACTCAGGAAGAAGAAGAAGAAGCCAAAACAAGTCGAGTTCCCGTCGATTCCAGAGATGCCGGCGGCGGTGAGAGACCGGATCGTTGAAATGGACGGCTACGAAATCCGATTGGTCATTTAGAAACAACTTGAAGATACGGATATTAAAAGAATCACGGTCGTTTATCCATCCCTACAAAGAAACTCCTTTTCGATTTTGCAACGGAGGAGGAGACGAGGCTGCTTAGTCAGCAAGAAAACAAGAACAAAAAGGGAATGAACGTACTGATAATCGATCTTGTTCTTCGAGAGAGAAGAATTTGTTTGAAGAAGTGGAAGATTGGAAGCAACGATGTGTACTGCTTGATGACGCAGTGGAATTCGTTGGTGGAAGAAAATGCGTTAGAAGTGGAGACAACATCCAGCTTTAGTGCTTTAGAAAAGATGAAATTGAGACTGAAACTCAAACGATTTTTTTCTCGTTTATGCTTGGCTATGGTTAAGCTTGATGTCATAACTTGTGCTTGAAGCTTTAGTTTTCAACATTGTAGCGCCAAATTAAAATTTTGTACTTTTAGTTATATGGCAATTTTTTTTTTTTTTTTTTTTTTTTGTAACAAAGACGAACTGAACTAGATTCATCTCCAATGTTTTTTTGAGTATATATTAATATCAAAGTTAATTTTTGTTGTGAATATTCATTGGACATGTATGGATATTCTTTTATGCTAAAATTTTAAAGTAAATATTTCTAATTTATTTATACATGTGTTAAGACTTAAAGAGATAAATGAGTATATATTAATTTAGAAAAACATTACTGAGACAAGAATAGTCTTATAATATATATTGCATTCATATTATAAAAAAAAGGCTAATTTTAGTTAAAGTATATCGGATAGATTCCAACAATAGTGAGTGGTCAAATCTCTTTCTTATTGTATTTGTATTCTAAGAGAAGATGATCTAAACCAATTAAAATTCCAAAATTGAAATCATTTCACCATGTCCTCTTATATATTGTATTCATTTATCTTGAAGATTTTATTTTGATTAAATTATGGTTATCCACTTTGGCGTTCTTTGATGCTATGTCAAACCATGGCAATGCTGAAGAACATGGAGTGATTGATGCTCGAGATTGCAAGAAGTAA

mRNA sequence

ATGGGAATGGGGAAACAAAAATTTGATGTAGGCTCCAGATTGGGGATTGATTTTCCAGATTTAAATGAACTCTACATCCCTCGAAGAAGAAGATCTCCCACTGCTGAAAACAGCCCTCCAATGTCTGCATTGAAGGCCGCCACTGTTCTGTTGGCGATGGCCTACTCTGTTACCGATATTCAAACCTTCTGCAATCGCAAATTGAAGAAATTTAGCAACACCCAGAAAAGGAAGAAGACTCTGAGAAATCTGAGAGAGAAGAATTTGTTTGAAGAAGTGGAAGATTGGAAGCAACGATGTGTACTGCTTGATGACGCAGTGGAATTCGTTGGTGGAAGAAAATGCGTTAGAAATTTTATTTTGATTAAATTATGGTTATCCACTTTGGCGTTCTTTGATGCTATGTCAAACCATGGCAATGCTGAAGAACATGGAGTGATTGATGCTCGAGATTGCAAGAAGTAA

Coding sequence (CDS)

ATGGGAATGGGGAAACAAAAATTTGATGTAGGCTCCAGATTGGGGATTGATTTTCCAGATTTAAATGAACTCTACATCCCTCGAAGAAGAAGATCTCCCACTGCTGAAAACAGCCCTCCAATGTCTGCATTGAAGGCCGCCACTGTTCTGTTGGCGATGGCCTACTCTGTTACCGATATTCAAACCTTCTGCAATCGCAAATTGAAGAAATTTAGCAACACCCAGAAAAGGAAGAAGACTCTGAGAAATCTGAGAGAGAAGAATTTGTTTGAAGAAGTGGAAGATTGGAAGCAACGATGTGTACTGCTTGATGACGCAGTGGAATTCGTTGGTGGAAGAAAATGCGTTAGAAATTTTATTTTGATTAAATTATGGTTATCCACTTTGGCGTTCTTTGATGCTATGTCAAACCATGGCAATGCTGAAGAACATGGAGTGATTGATGCTCGAGATTGCAAGAAGTAA

Protein sequence

MGMGKQKFDVGSRLGIDFPDLNELYIPRRRRSPTAENSPPMSALKAATVLLAMAYSVTDIQTFCNRKLKKFSNTQKRKKTLRNLREKNLFEEVEDWKQRCVLLDDAVEFVGGRKCVRNFILIKLWLSTLAFFDAMSNHGNAEEHGVIDARDCKK
Homology
[Close]
BLAST of Spg008541 vs. NCBI nr
Match: XP_038875653.1 (B3 domain-containing protein At1g05920-like [Benincasa hispida])

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-08
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 0 

Query: 10 VGSRLGIDFPDLNELYIPRRRRSPTA---------ENSPPMSALKAATVLLAMAYSVTDI 69
          +G  LG+  PDLN+L IPRRR S  A          + PP+S L+AA VL+A+A SV+D+
Sbjct: 1  MGMELGL--PDLNKLCIPRRRSSSAAGKKEQHLAESSKPPISMLEAAVVLMAIANSVSDV 60

Query: 70 QTFCNRKLKKFSNTQKRK 79
          ++FCN +LKK+ NT KRK
Sbjct: 61 ESFCNCELKKYENTHKRK 76

[Close]
BLAST of Spg008541 vs. NCBI nr
Match: XP_022146365.1 (putative B3 domain-containing protein At2g27410 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-05
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 1  MGMGKQKFDVGSRLGIDFPDL-NELYIPRRRRS----------------PTAENSPPMSA 60
          MGMG        ++GI F DL N + IP+RRR+                P++  + PMS 
Sbjct: 1  MGMGTVVELEALKMGICFSDLTNGISIPQRRRTGSSSSSAETSETNKPKPSSSATAPMSM 60

Query: 61 LKAATVLLAMAYSVTDIQTFCNRKLKKFSNTQKRKK 80
          ++AA VLLAMAYS TD++ FC  +L+K  N++KRK+
Sbjct: 61 VEAAAVLLAMAYSATDVEAFCKSELEK--NSRKRKR 94

[Close]
BLAST of Spg008541 vs. NCBI nr
Match: XP_038876237.1 (putative B3 domain-containing protein At3g24850 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-04
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 0 

Query: 3  MGKQKFDVGSRLGIDFPDLNELYIPRRRR---------SPTAENSPPMSALKAATVLLAM 62
          MG  K     R+G+D PDLNE+YIPRRRR          P  E   P++ L+AA +L+ M
Sbjct: 1  MGMWKTVESFRMGLDLPDLNEIYIPRRRRGSSGAGKKEQPKTETELPLTVLEAAAILIEM 60

Query: 63 AYSVTDIQTFCNRKLKKFSNTQKRKK 80
          A  V+D++        +  NT KRKK
Sbjct: 61 ANFVSDVE-------PQNINTHKRKK 79

[Close]
BLAST of Spg008541 vs. NCBI nr
Match: XP_038907053.1 (B3 domain-containing protein At2g31420-like [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0 

Query: 13 RLGIDFPDLNELYIPRRRR--------SPTAENSPPMSALKAATVLLAMAYSVTDIQTFC 72
          R+G D PDL+ +YIPR+RR         P  E+  P++ L+AAT+L+ M  SV+D+    
Sbjct: 11 RMGFDLPDLDNIYIPRKRRGSSGAGKKQPETESELPLTMLEAATILIEMTNSVSDVNP-- 70

Query: 73 NRKLKKFSNTQKRKKTL 82
              +K SNT KRK  L
Sbjct: 71 ----EKISNTHKRKNPL 81

[Close]
BLAST of Spg008541 vs. ExPASy TrEMBL
Match: A0A6J1CX35 (putative B3 domain-containing protein At2g27410 OS=Momordica charantia OX=3673 GN=LOC111015593 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 1  MGMGKQKFDVGSRLGIDFPDL-NELYIPRRRRS----------------PTAENSPPMSA 60
          MGMG        ++GI F DL N + IP+RRR+                P++  + PMS 
Sbjct: 1  MGMGTVVELEALKMGICFSDLTNGISIPQRRRTGSSSSSAETSETNKPKPSSSATAPMSM 60

Query: 61 LKAATVLLAMAYSVTDIQTFCNRKLKKFSNTQKRKK 80
          ++AA VLLAMAYS TD++ FC  +L+K  N++KRK+
Sbjct: 61 VEAAAVLLAMAYSATDVEAFCKSELEK--NSRKRKR 94

The following BLAST results are available for this feature:
BLAST of Spg008541 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875653.14.2e-0850.00B3 domain-containing protein At1g05920-like [Benincasa hispida][more]
XP_022146365.17.5e-0540.63putative B3 domain-containing protein At2g27410 [Momordica charantia][more]
XP_038876237.11.7e-0440.70putative B3 domain-containing protein At3g24850 [Benincasa hispida][more]
XP_038907053.12.8e-0441.56B3 domain-containing protein At2g31420-like [Benincasa hispida][more]
BLAST of Spg008541 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg008541 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CX353.6e-0540.63putative B3 domain-containing protein At2g27410 OS=Momordica charantia OX=3673 G... [more]
BLAST of Spg008541 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008541.1Spg008541.1mRNA