Spg008526 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008526
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold10: 35589836 .. 35590540 (+)
RNA-Seq ExpressionSpg008526
SyntenySpg008526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTGTGGAATCTATGGAATTACAGAAACAAAACAATACAATCATCCAGCATCCCAGACAAGATTTCAATGGTCAGAATGATTGAAAGAAGCCTCGATCTCAGAGAGGATAACAATGACGCGCACCTGAATTCTCAGCAGCGAGGAAGGAATTCCGAATTGAAGACCCTCACGAGTCAAGTGAGATGGAAACCGCCGCCGGTAGACGCATGGAAGCTAAATTCAGATGCTTCCTGGAGTGAATCACAGAAAAGAGGAGGAATTGGTTGGATTTTTCGTGACTCTTCAGGGTCTTCAATCTGTATGGGATTTCAGCAAATTAAGGAAAAATGGTCGGTCAAAATTCTAGAAATGAAGGCGATTTTAGAAGGTCTGAAGAACATACCTTCAACCAGCCATGGTGACAGCTCCCAAGCCTCGATCCCCATCTTCGTCGAGTCTGATGCGGTTAATGTTATCAAAATTCTAAACGGGGAAGATGAAGATTTGTCGGAGATTTCTTTCCTTACCGAAGAGATCATCCGCCTGAAGAATCGTTTCGTAGAAATCAAATTCGATTACTGCCCGAGAGATCAAAACTTAGCAGTGGATCTTCTGGCTCGCATTGCTATTTCTCCCCCTCCCTGGTTCCCGTTTTGGAATCCTCTCCCATGGTGGAAGAGGGTGTTGGTTGTGTGGTTTGGGCCCCCCTTTTGTGATTAA

mRNA sequence

ATGATTTTGTGGAATCTATGGAATTACAGAAACAAAACAATACAATCATCCAGCATCCCAGACAAGATTTCAATGGTCAGAATGATTGAAAGAAGCCTCGATCTCAGAGAGGATAACAATGACGCGCACCTGAATTCTCAGCAGCGAGGAAGGAATTCCGAATTGAAGACCCTCACGAGTCAAGTGAGATGGAAACCGCCGCCGGTAGACGCATGGAAGCTAAATTCAGATGCTTCCTGGAGTGAATCACAGAAAAGAGGAGGAATTGGTTGGATTTTTCGTGACTCTTCAGGGTCTTCAATCTGTATGGGATTTCAGCAAATTAAGGAAAAATGGTCGGTCAAAATTCTAGAAATGAAGGCGATTTTAGAAGGTCTGAAGAACATACCTTCAACCAGCCATGGTGACAGCTCCCAAGCCTCGATCCCCATCTTCGTCGAGTCTGATGCGGTTAATGTTATCAAAATTCTAAACGGGGAAGATGAAGATTTGTCGGAGATTTCTTTCCTTACCGAAGAGATCATCCGCCTGAAGAATCGTTTCGTAGAAATCAAATTCGATTACTGCCCGAGAGATCAAAACTTAGCAGTGGATCTTCTGGCTCGCATTGCTATTTCTCCCCCTCCCTGGTTCCCGTTTTGGAATCCTCTCCCATGGTGGAAGAGGGTGTTGGTTGTGTGGTTTGGGCCCCCCTTTTGTGATTAA

Coding sequence (CDS)

ATGATTTTGTGGAATCTATGGAATTACAGAAACAAAACAATACAATCATCCAGCATCCCAGACAAGATTTCAATGGTCAGAATGATTGAAAGAAGCCTCGATCTCAGAGAGGATAACAATGACGCGCACCTGAATTCTCAGCAGCGAGGAAGGAATTCCGAATTGAAGACCCTCACGAGTCAAGTGAGATGGAAACCGCCGCCGGTAGACGCATGGAAGCTAAATTCAGATGCTTCCTGGAGTGAATCACAGAAAAGAGGAGGAATTGGTTGGATTTTTCGTGACTCTTCAGGGTCTTCAATCTGTATGGGATTTCAGCAAATTAAGGAAAAATGGTCGGTCAAAATTCTAGAAATGAAGGCGATTTTAGAAGGTCTGAAGAACATACCTTCAACCAGCCATGGTGACAGCTCCCAAGCCTCGATCCCCATCTTCGTCGAGTCTGATGCGGTTAATGTTATCAAAATTCTAAACGGGGAAGATGAAGATTTGTCGGAGATTTCTTTCCTTACCGAAGAGATCATCCGCCTGAAGAATCGTTTCGTAGAAATCAAATTCGATTACTGCCCGAGAGATCAAAACTTAGCAGTGGATCTTCTGGCTCGCATTGCTATTTCTCCCCCTCCCTGGTTCCCGTTTTGGAATCCTCTCCCATGGTGGAAGAGGGTGTTGGTTGTGTGGTTTGGGCCCCCCTTTTGTGATTAA

Protein sequence

MILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTLTSQVRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEMKAILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIRLKNRFVEIKFDYCPRDQNLAVDLLARIAISPPPWFPFWNPLPWWKRVLVVWFGPPFCD
Homology
BLAST of Spg008526 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-21
Identity = 64/201 (31.84%), Postives = 108/201 (53.73%), Query Frame = 0

Query: 4   WNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTLTSQVR 63
           W +WN+RN  I         +M++ + + +      ++  L+          KTL ++++
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLH-------KTLNNKLK 77

Query: 64  WKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEMKAIL 123
           W+PPP+  W LN+DASWS+S  RGGIGWI R   G  +  G + ++   +VK+LE  AIL
Sbjct: 78  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 137

Query: 124 EGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIRLKNRFVE 183
           EGL+N+ +           P+ +E+D+  V  +LN + EDL++  ++ EEI+ L++    
Sbjct: 138 EGLRNLTNLG------VLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEI 197

Query: 184 IKFDYCPRDQNLAVDLLARIA 205
           + F    R+ N     LA+ A
Sbjct: 198 LAFAKVGRETNGCAHSLAQRA 205

BLAST of Spg008526 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-18
Identity = 66/177 (37.29%), Postives = 96/177 (54.24%), Query Frame = 0

Query: 1   MILWNLWNYRNKTIQSSSIPDK----ISMVRMIERSLD--------LREDNNDAHLNSQQ 60
           +I W +W  RN++I      D+     S+V  I  ++D         R   ND +L    
Sbjct: 36  VIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYL---P 95

Query: 61  RGRNSELKTLTSQVRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQI 120
           RGR + L  L   VRW  PP + WKLN+DASWSE ++ GGIGWI  D  G  +  G  +I
Sbjct: 96  RGREN-LNML--GVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKI 155

Query: 121 KEKWSVKILEMKAILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLS 166
           +EK  +  LE+  I+ GL+ I       + Q+  PI++ESD+V VI+++  ED DL+
Sbjct: 156 REKKEINALELMTIIRGLQFI-------NMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

BLAST of Spg008526 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 9.0e-18
Identity = 64/209 (30.62%), Postives = 104/209 (49.76%), Query Frame = 0

Query: 1   MILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTL-- 60
           +I W +W  RNK+I      +   +  +I+R + +     D +L  +   ++  L     
Sbjct: 14  IIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYI-INSAGRDTNLKGKSANKDLHLIRRIG 73

Query: 61  -TSQVRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKIL 120
             +  RWKPP  ++WKLN+DA+W      GGIGWI RD  G  I    + I+ + ++  L
Sbjct: 74  DNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYL 133

Query: 121 EMKAILEGLKNIPSTSHGDSSQASI-PIFVESDAVNVIKILNGEDEDLSEISFLTEEIIR 180
           E+ AI EGL+ I         Q    PI +ESD++  I +L+ + +D +EI +L EEI +
Sbjct: 134 EVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQ 193

Query: 181 LKNRFVEIKFDYCPRDQNLAVDLLARIAI 206
           +      +   +  R+ N     LAR A+
Sbjct: 194 MMEDMKIVSMRHISREANKVAHDLARRAM 221

BLAST of Spg008526 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-17
Identity = 67/212 (31.60%), Postives = 109/212 (51.42%), Query Frame = 0

Query: 1   MILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGR--NSELKTL 60
           +I W +W  RNK+I     P+     R I+ ++D R   N A  N+  +G+  N +L  +
Sbjct: 14  IIAWQIWEMRNKSIFKGVHPE----TRDIQLAID-RYIINSAGRNTNLKGKSTNKDLHLI 73

Query: 61  -----TSQVRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWS 120
                 +  +WKPP  ++WKLN++A+W      GGIGWI RD  G  I    + I+ + +
Sbjct: 74  RRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERN 133

Query: 121 VKILEMKAILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEE 180
           +  LE+ AI EGL+ I         +   PI +ESD++  I +L+ + +D +EI +L EE
Sbjct: 134 ITYLEVMAICEGLRAI-------RQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 193

Query: 181 IIRLKNRFVEIKFDYCPRDQNLAVDLLARIAI 206
           I ++      +   +  R+ N     LAR A+
Sbjct: 194 IWQMMKDMEIVSMRHISREANKVAHGLARRAM 213

BLAST of Spg008526 vs. NCBI nr
Match: CAD5320331.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-15
Identity = 65/226 (28.76%), Postives = 108/226 (47.79%), Query Frame = 0

Query: 2   ILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTLTSQ 61
           +LW LW  RN+ +   +  D   ++R +    D  E +    L  +  G   E       
Sbjct: 80  LLWRLWKSRNELMFKGNEYDAPEVLRRVRE--DFEEWSTRRELEGKASGPQVERNL---S 139

Query: 62  VRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEMKA 121
           V+WKPPP    K N+DA+W     R GIGWI R+ SG  + MG + +    +V   E++A
Sbjct: 140 VQWKPPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEA 199

Query: 122 ILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIRLKNRF 181
           +   +  +   ++         I  ESDA  ++ +LN  D+    +    E+I +L + F
Sbjct: 200 LRWAVLTMSKFNYK-------RIIFESDAQALVNLLN-SDDFWPTLQPALEDIQQLLHHF 259

Query: 182 VEIKFDYCPRDQNLAVDLLARIAISPPPWFP-FWNPLPWWKRVLVV 227
            E+KF++ PR  N   D +AR +IS   + P  ++ +P W R  ++
Sbjct: 260 EEVKFEFTPRGGNKVADRIARESISFSNYDPKLFSIVPQWLRSTLI 292

BLAST of Spg008526 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.5e-22
Identity = 64/201 (31.84%), Postives = 108/201 (53.73%), Query Frame = 0

Query: 4   WNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTLTSQVR 63
           W +WN+RN  I         +M++ + + +      ++  L+          KTL ++++
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLH-------KTLNNKLK 77

Query: 64  WKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEMKAIL 123
           W+PPP+  W LN+DASWS+S  RGGIGWI R   G  +  G + ++   +VK+LE  AIL
Sbjct: 78  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 137

Query: 124 EGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIRLKNRFVE 183
           EGL+N+ +           P+ +E+D+  V  +LN + EDL++  ++ EEI+ L++    
Sbjct: 138 EGLRNLTNLG------VLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEI 197

Query: 184 IKFDYCPRDQNLAVDLLARIA 205
           + F    R+ N     LA+ A
Sbjct: 198 LAFAKVGRETNGCAHSLAQRA 205

BLAST of Spg008526 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 66/177 (37.29%), Postives = 96/177 (54.24%), Query Frame = 0

Query: 1   MILWNLWNYRNKTIQSSSIPDK----ISMVRMIERSLD--------LREDNNDAHLNSQQ 60
           +I W +W  RN++I      D+     S+V  I  ++D         R   ND +L    
Sbjct: 36  VIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYL---P 95

Query: 61  RGRNSELKTLTSQVRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQI 120
           RGR + L  L   VRW  PP + WKLN+DASWSE ++ GGIGWI  D  G  +  G  +I
Sbjct: 96  RGREN-LNML--GVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKI 155

Query: 121 KEKWSVKILEMKAILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLS 166
           +EK  +  LE+  I+ GL+ I       + Q+  PI++ESD+V VI+++  ED DL+
Sbjct: 156 REKKEINALELMTIIRGLQFI-------NMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

BLAST of Spg008526 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-18
Identity = 64/209 (30.62%), Postives = 104/209 (49.76%), Query Frame = 0

Query: 1   MILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTL-- 60
           +I W +W  RNK+I      +   +  +I+R + +     D +L  +   ++  L     
Sbjct: 14  IIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYI-INSAGRDTNLKGKSANKDLHLIRRIG 73

Query: 61  -TSQVRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKIL 120
             +  RWKPP  ++WKLN+DA+W      GGIGWI RD  G  I    + I+ + ++  L
Sbjct: 74  DNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYL 133

Query: 121 EMKAILEGLKNIPSTSHGDSSQASI-PIFVESDAVNVIKILNGEDEDLSEISFLTEEIIR 180
           E+ AI EGL+ I         Q    PI +ESD++  I +L+ + +D +EI +L EEI +
Sbjct: 134 EVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQ 193

Query: 181 LKNRFVEIKFDYCPRDQNLAVDLLARIAI 206
           +      +   +  R+ N     LAR A+
Sbjct: 194 MMEDMKIVSMRHISREANKVAHDLARRAM 221

BLAST of Spg008526 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.7e-18
Identity = 67/212 (31.60%), Postives = 109/212 (51.42%), Query Frame = 0

Query: 1   MILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGR--NSELKTL 60
           +I W +W  RNK+I     P+     R I+ ++D R   N A  N+  +G+  N +L  +
Sbjct: 14  IIAWQIWEMRNKSIFKGVHPE----TRDIQLAID-RYIINSAGRNTNLKGKSTNKDLHLI 73

Query: 61  -----TSQVRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWS 120
                 +  +WKPP  ++WKLN++A+W      GGIGWI RD  G  I    + I+ + +
Sbjct: 74  RRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERN 133

Query: 121 VKILEMKAILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEE 180
           +  LE+ AI EGL+ I         +   PI +ESD++  I +L+ + +D +EI +L EE
Sbjct: 134 ITYLEVMAICEGLRAI-------RQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 193

Query: 181 IIRLKNRFVEIKFDYCPRDQNLAVDLLARIAI 206
           I ++      +   +  R+ N     LAR A+
Sbjct: 194 IWQMMKDMEIVSMRHISREANKVAHGLARRAM 213

BLAST of Spg008526 vs. ExPASy TrEMBL
Match: A0A7G2EDP1 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS8461 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 65/226 (28.76%), Postives = 108/226 (47.79%), Query Frame = 0

Query: 2   ILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTLTSQ 61
           +LW LW  RN+ +   +  D   ++R +    D  E +    L  +  G   E       
Sbjct: 80  LLWRLWKSRNELMFKGNEYDAPEVLRRVRE--DFEEWSTRRELEGKASGPQVERNL---S 139

Query: 62  VRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEMKA 121
           V+WKPPP    K N+DA+W     R GIGWI R+ SG  + MG + +    +V   E++A
Sbjct: 140 VQWKPPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEA 199

Query: 122 ILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIRLKNRF 181
           +   +  +   ++         I  ESDA  ++ +LN  D+    +    E+I +L + F
Sbjct: 200 LRWAVLTMSKFNYK-------RIIFESDAQALVNLLN-SDDFWPTLQPALEDIQQLLHHF 259

Query: 182 VEIKFDYCPRDQNLAVDLLARIAISPPPWFP-FWNPLPWWKRVLVV 227
            E+KF++ PR  N   D +AR +IS   + P  ++ +P W R  ++
Sbjct: 260 EEVKFEFTPRGGNKVADRIARESISFSNYDPKLFSIVPQWLRSTLI 292

BLAST of Spg008526 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-17
Identity = 64/226 (28.32%), Postives = 105/226 (46.46%), Query Frame = 0

Query: 2   ILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTLTSQ 61
           +LW LW  RN+ +      D   ++R      D  E +    L  +  G   E       
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAME--DFEEWSTRRELEGKASGPQVERNL---S 139

Query: 62  VRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEMKA 121
           V+WK PP    K N+DA+W     R GIGWI R+ SG  + MG + +    +V   E++A
Sbjct: 140 VQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEA 199

Query: 122 ILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIRLKNRF 181
           +   +  +   ++         I  ESDA  ++ +LN  D+    +    E+I +L + F
Sbjct: 200 LRWAVLTMSRFNYK-------RIIFESDAQALVNLLN-SDDFWPTLQPALEDIQQLLHHF 259

Query: 182 VEIKFDYCPRDQNLAVDLLARIAISPPPWFP-FWNPLPWWKRVLVV 227
            E+KF++ PR  N   D +AR +IS   + P  ++ +P W R  ++
Sbjct: 260 EEVKFEFTPRGGNKVADRIARESISFSNYDPKLFSIVPQWLRSTLI 292

BLAST of Spg008526 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 6.8e-16
Identity = 60/222 (27.03%), Postives = 110/222 (49.55%), Query Frame = 0

Query: 2   ILWNLWNYRNKTIQSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTLTSQ 61
           +LW LW  RN+ +      +   ++R  E  L+      +A    +  G   ++   +S 
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEA----ESCGTKPQVNR-SSC 422

Query: 62  VRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEMKA 121
            RW+PPP    K N+DA+W+   +R GIGW+ R+  G    MG + + +  SV   E++A
Sbjct: 423 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEA 482

Query: 122 ILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIRLKNRF 181
           +   + ++    +         +  ESD+  +I+ILN  DE    +    +++ RL ++F
Sbjct: 483 MRWAVLSLSRFQYN-------YVIFESDSQVLIEILN-NDEIWPSLKPTIQDLQRLLSQF 542

Query: 182 VEIKFDYCPRDQNLAVDLLARIAISPPPWFP-FWNPLPWWKR 223
            E+KF + PR+ N   + +AR ++S   + P  ++ +P W R
Sbjct: 543 TEVKFVFIPREGNTLAERVARESLSFLNYDPKLYSIVPSWAR 571

BLAST of Spg008526 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 9.6e-10
Identity = 52/221 (23.53%), Postives = 99/221 (44.80%), Query Frame = 0

Query: 2   ILWNLWNYRNKTIQSSSIPDKISMVRMIERSL-DLREDNNDAHLNSQQRG-RNSELKTLT 61
           ++W +W   N  + + +   +      +E +L D +E  ++   N QQ G RN++    T
Sbjct: 47  LMWRIWKSGNDLVFNHT---RTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNT 106

Query: 62  SQVRWKPPPVDAWKLNSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEM 121
              +W PP  D  K N DAS  E     G+GWI R+S G+ I  G  + + + + +  E 
Sbjct: 107 ---KWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAEC 166

Query: 122 KAILEGLKNIPSTSHGDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIRLKN 181
             ++  ++     S+G   +    +  E D   + +++N +  +   +    + I     
Sbjct: 167 STLIWAIQ----ASYGFGHK---KVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIP 226

Query: 182 RFVEIKFDYCPRDQNLAVDLLARIAISPPPWFPFWNPLPWW 221
            F  I+F +  R+QN   D LA+ AI     +  ++  P++
Sbjct: 227 SFESIEFSFKHREQNGCADFLAKQAIKENTQWSLFHSCPYF 253

BLAST of Spg008526 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-07
Identity = 37/174 (21.26%), Postives = 81/174 (46.55%), Query Frame = 0

Query: 33  LDLREDNNDAHLNSQQRGRNSELKTLTSQVRWKPPPVDAWKLNSDASWSESQKRGGIGWI 92
           LD++  N+D     Q +   ++        +W+ P  +  K N D S    ++  G+ WI
Sbjct: 7   LDVKHKNDDNVKGGQTKSSRTD--------KWQKPGAEWVKCNYDVSNHAGRQDSGLRWI 66

Query: 93  FRDSSGSSICMGFQQIKEKWSVKILEMKAILEGLKNIPSTSHGDSSQASIPIFVESDAVN 152
            R+S G+ +  G  + + + ++K  E  A++  ++      +         +  E D + 
Sbjct: 67  IRNSQGTCLDCGCGKFQGRQTIKEAECTALIWAIQCAWDLGYR-------RVEFEGDNIT 126

Query: 153 VIKILNGEDEDLSEISFLTEEIIRLKNRFVEIKFDYCPRDQNLAVDLLARIAIS 207
           V +++  ++ +   + +  E I +    F  +KF +  R+QN+ VD+LA+ A++
Sbjct: 127 VNRLIRNKETN-PRLRYYLEFIQQWSKAFTTVKFTFRHREQNVCVDVLAKKAVA 164

BLAST of Spg008526 vs. TAIR 10
Match: AT1G27870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 8.4e-06
Identity = 51/208 (24.52%), Postives = 88/208 (42.31%), Query Frame = 0

Query: 15  QSSSIPDKISMVRMIERSLDLREDNNDAHLNSQQRGRNSELKTLTSQVRWKPPPVDAWKL 74
           Q   IP +I++      + +  E N  A +N++ RG   E     +  RW+ P     K 
Sbjct: 7   QRRHIPWEITLRLAQTDAHEYTEANTVAQINTRSRGVREE----DNHDRWRRPERGWIKC 66

Query: 75  NSDASWSESQKRGGIGWIFRDSSGSSICMGFQQIKEKWSVKILEMKAILEGLKNIPSTSH 134
           N D S+     +   GW+ RDS+GS +  G    ++  +    E++A++  +++    SH
Sbjct: 67  NFDGSFVNGDVKSKAGWVVRDSNGSYLLAGQAIGRKVDNALESEIQALIISMQH--CWSH 126

Query: 135 GDSSQASIPIFVESDAVNVIKILNGEDEDLSEISFLTEEIIR----LKNRFVEIKFDYCP 194
           G        +  E D   +  ++NG     S++ F     IR       +F  I F++  
Sbjct: 127 GYKR-----VCFEGDNKMLFDLING-----SKVYFGVHNWIRDIHWWLRKFESIHFNWIR 186

Query: 195 RDQNLAVDLLARIAISPPPWF--PFWNP 217
           R  N   D+LA+  +     F   FW P
Sbjct: 187 RHHNTPADILAKAPLQNQSLFLNHFWVP 198

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.11.7e-2131.84uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143317.13.1e-1837.29uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_022156777.19.0e-1830.62uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022143535.12.0e-1731.60uncharacterized protein LOC111013412 [Momordica charantia][more]
CAD5320331.15.4e-1528.76unnamed protein product [Arabidopsis thaliana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV98.5e-2231.84uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CQG01.5e-1837.29uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV14.3e-1830.62uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CP269.7e-1831.60uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A7G2EDP12.6e-1528.76(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC... [more]
Match NameE-valueIdentityDescription
AT2G34320.13.6e-1728.32Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G29090.16.8e-1627.03Ribonuclease H-like superfamily protein [more]
AT5G65005.19.6e-1023.53Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT3G23320.12.0e-0721.26Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT1G27870.18.4e-0624.52Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 75..202
e-value: 1.3E-19
score: 70.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 71..207
e-value: 7.3E-15
score: 57.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..58
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 59..207
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 74..202
e-value: 6.77695E-20
score: 80.0508
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 71..211

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008526.1Spg008526.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity