Spg008476 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008476
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Geranylgeranyl pyrophosphate synthase
Location	scaffold10: 33801698 .. 33802261 (+)
RNA-Seq Expression	Spg008476
Synteny	Spg008476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATTCTAGCAGGAGACTCACTCCTCTCTCTAGCATTTCAACACATAGCTGAGAGAACGCAAAACGTTTCATCTGAAAAAATTCTAAGAGCCATTATCGAGCTTGCTTCGGGAATTGGATTTGATGGGTTGCTCGGAGGGCAACTCCTAGACCTCCATTGCGAGGGTAAAGAAGTGAGCCTTGTCGAGCTCGAGTACATTTACTTGCAGAAAACGGCGAGGTTGATTGAGGCGTCGACGGTCTGTGGGGCAATCATGGGAGGAGGCGACGACGGGGAGATAGAGAGGTTAAGGAGATATGGAAGGCATGTTGGAGTGATGTGTCAAGTGGTGGATGACATTGTGGGATTGACAAAGTCTTCAGAGGAGTTGGGGAAGACCCCAAAGAAGGATTTGGAGAGTGACAAAGCTATATATCCCAAATTATTGGGGATGGAAGGAGCCAAGAGAAGTGTGAAGGAGTTGATGGGGAAGGCTATGGAGGAGCTTTCTTGCTTTGATCCAACCAAGGTTTCTCCTTTGTATCACTTGCCCAATTACATTGCCAACAGAATAAATTAG

mRNA sequence

ATGGCTATTCTAGCAGGAGACTCACTCCTCTCTCTAGCATTTCAACACATAGCTGAGAGAACGCAAAACGTTTCATCTGAAAAAATTCTAAGAGCCATTATCGAGCTTGCTTCGGGAATTGGATTTGATGGGTTGCTCGGAGGGCAACTCCTAGACCTCCATTGCGAGGGTAAAGAAGTGAGCCTTGTCGAGCTCGAGTACATTTACTTGCAGAAAACGGCGAGGTTGATTGAGGCGTCGACGGTCTGTGGGGCAATCATGGGAGGAGGCGACGACGGGGAGATAGAGAGGTTAAGGAGATATGGAAGGCATGTTGGAGTGATGTGTCAAGTGGTGGATGACATTGTGGGATTGACAAAGTCTTCAGAGGAGTTGGGGAAGACCCCAAAGAAGGATTTGGAGAGTGACAAAGCTATATATCCCAAATTATTGGGGATGGAAGGAGCCAAGAGAAGTGTGAAGGAGTTGATGGGGAAGGCTATGGAGGAGCTTTCTTGCTTTGATCCAACCAAGGTTTCTCCTTTGTATCACTTGCCCAATTACATTGCCAACAGAATAAATTAG

Coding sequence (CDS)

ATGGCTATTCTAGCAGGAGACTCACTCCTCTCTCTAGCATTTCAACACATAGCTGAGAGAACGCAAAACGTTTCATCTGAAAAAATTCTAAGAGCCATTATCGAGCTTGCTTCGGGAATTGGATTTGATGGGTTGCTCGGAGGGCAACTCCTAGACCTCCATTGCGAGGGTAAAGAAGTGAGCCTTGTCGAGCTCGAGTACATTTACTTGCAGAAAACGGCGAGGTTGATTGAGGCGTCGACGGTCTGTGGGGCAATCATGGGAGGAGGCGACGACGGGGAGATAGAGAGGTTAAGGAGATATGGAAGGCATGTTGGAGTGATGTGTCAAGTGGTGGATGACATTGTGGGATTGACAAAGTCTTCAGAGGAGTTGGGGAAGACCCCAAAGAAGGATTTGGAGAGTGACAAAGCTATATATCCCAAATTATTGGGGATGGAAGGAGCCAAGAGAAGTGTGAAGGAGTTGATGGGGAAGGCTATGGAGGAGCTTTCTTGCTTTGATCCAACCAAGGTTTCTCCTTTGTATCACTTGCCCAATTACATTGCCAACAGAATAAATTAG

Protein sequence

MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEVSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTKSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPNYIANRIN

Homology

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BLAST of Spg008476 vs. NCBI nr
Match: GFY87694.1 (geranylgeranyl pyrophosphate synthase 1 [Actinidia rufa])

HSP 1 Score: 238.8 bits (608), Expect = 3.8e-59
Identity = 117/187 (62.57%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEV 60
           +AILAGD+LLSLAF+H+A RT +VSS++++RAI EL S +G +GL+ GQ++D+  EGK+V
Sbjct: 181 VAILAGDALLSLAFEHVAARTVHVSSDRVVRAIAELGSSVGSEGLVAGQIVDICSEGKQV 240

Query: 61  SLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTK 120
           +L ELEYI++ KTA+L+EAS VCGAIMGGG+  E+ER+RRY R +G++ QVVDDI+ +TK
Sbjct: 241 NLRELEYIHVHKTAKLLEASVVCGAIMGGGNVSEVERMRRYARCIGLLFQVVDDILDVTK 300

Query: 121 SSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPN 180
           SSEELGKT  KDL SDKA YPKL+G++ AK+   ELM KAM+EL  FD  K +PLYHL N
Sbjct: 301 SSEELGKTAGKDLASDKATYPKLMGLDKAKKFAGELMDKAMKELEYFDAAKAAPLYHLAN 360

Query: 181 YIANRIN 188
           YIA R N
Sbjct: 361 YIAYRQN 367

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BLAST of Spg008476 vs. NCBI nr
Match: XP_024191078.1 (geranylgeranyl pyrophosphate synthase 7, chloroplastic [Rosa chinensis] >PRQ45588.1 putative geranylgeranyl diphosphate synthase [Rosa chinensis])

HSP 1 Score: 238.0 bits (606), Expect = 6.4e-59
Identity = 114/184 (61.96%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 2   AILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEVS 61
           A+LAGD+LLSLAF+HIA +T NVS E++++ I+EL S +G  GL+ GQ++D+H EGKEV+
Sbjct: 175 AVLAGDALLSLAFEHIAAKTTNVSPERVIQTIVELGSAVGSLGLVAGQMVDIHSEGKEVT 234

Query: 62  LVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTKS 121
           L ELEYI++ KTARL+EAS VCGAIMGGG++ E+E++R+Y R +G++ QVVDDI+ +TKS
Sbjct: 235 LRELEYIHVHKTARLLEASVVCGAIMGGGNEIEVEKMRKYARCIGLLFQVVDDILDVTKS 294

Query: 122 SEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPNY 181
           SEELGKT  KDL SDKA YPKL+G+EGAK    EL+ +A+EEL+ FD  K +PLY+L NY
Sbjct: 295 SEELGKTAGKDLVSDKATYPKLIGIEGAKNFAAELVAQAIEELAYFDGAKAAPLYYLANY 354

Query: 182 IANR 186
           IA R
Sbjct: 355 IAKR 358

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BLAST of Spg008476 vs. NCBI nr
Match: PSS30043.1 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 238.0 bits (606), Expect = 6.4e-59
Identity = 116/187 (62.03%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEV 60
           +AILAGD+LLSLAF+H+A RT +VSS++++RAI EL S +G +GL+ GQ++D+  EGK+V
Sbjct: 181 VAILAGDALLSLAFEHVAARTVHVSSDRVVRAIAELGSSVGSEGLVAGQIVDICSEGKQV 240

Query: 61  SLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTK 120
           +L ELEYI++ KTA+L+EAS VCGAIMGGG+  E+ER+R+Y R +G++ QVVDDI+ +TK
Sbjct: 241 NLRELEYIHVHKTAKLLEASVVCGAIMGGGNVSEVERMRKYARCIGLLFQVVDDILDVTK 300

Query: 121 SSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPN 180
           SSEELGKT  KDL SDKA YPKL+G++ AK+   ELM KAM+EL  FD +K +PLYHL N
Sbjct: 301 SSEELGKTAGKDLASDKATYPKLMGLDKAKKFAGELMDKAMKELEYFDASKAAPLYHLAN 360

Query: 181 YIANRIN 188
           YIA R N
Sbjct: 361 YIAYRQN 367

[Close]

BLAST of Spg008476 vs. NCBI nr
Match: OMO55480.1 (Polyprenyl synthetase [Corchorus capsularis])

HSP 1 Score: 237.7 bits (605), Expect = 8.4e-59
Identity = 113/184 (61.41%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 2   AILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEVS 61
           AILAGD+LLSLAF+H+AE T  VS+++++RAI EL S +G +GL+ GQ++D+  EGKEVS
Sbjct: 181 AILAGDALLSLAFEHVAENTNYVSADRVVRAIAELGSAVGSEGLVAGQIVDIKSEGKEVS 240

Query: 62  LVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTKS 121
           L ELE+I+L KTA+L+EAS VCGAI+GG +DG++ER+R+Y R +G++ QVVDDI+ +TKS
Sbjct: 241 LKELEFIHLHKTAKLLEASVVCGAIVGGANDGDVERVRKYARSIGLLFQVVDDILDVTKS 300

Query: 122 SEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPNY 181
           SEELGKT  KDL SDKA YPKLLG++ AK+   +LM +A+EEL+ FDP K +PLYHL  +
Sbjct: 301 SEELGKTAGKDLVSDKATYPKLLGLDMAKKFAGDLMAQAVEELAYFDPAKAAPLYHLAKF 360

Query: 182 IANR 186
           I NR
Sbjct: 361 IYNR 364

[Close]

BLAST of Spg008476 vs. NCBI nr
Match: OMP05123.1 (Polyprenyl synthetase [Corchorus olitorius])

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-58
Identity = 112/184 (60.87%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 2   AILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEVS 61
           AILAGD+LLSLAF+H+A+ T NVS+++++RAI EL S +G +GL+ GQ++D+  EGKEVS
Sbjct: 184 AILAGDALLSLAFEHVAKNTNNVSADRVVRAIAELGSAVGSEGLVAGQIVDIQSEGKEVS 243

Query: 62  LVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTKS 121
           L ELE+I+L KTA+L+EAS VCGAI+GG +DG++ER+R+Y R +G++ QVVDDI+ +TKS
Sbjct: 244 LKELEFIHLHKTAKLLEASVVCGAIVGGANDGDVERVRKYARSIGLLFQVVDDILDVTKS 303

Query: 122 SEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPNY 181
           SE LGKT  KDL SDKA YPKLLG++ AK+   +LM +A+EEL+ FDP K +PLYHL  +
Sbjct: 304 SEALGKTAGKDLVSDKATYPKLLGLDMAKKFGADLMAQAVEELAYFDPAKAAPLYHLAKF 363

Query: 182 IANR 186
           I NR
Sbjct: 364 IYNR 367

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BLAST of Spg008476 vs. ExPASy Swiss-Prot
Match: Q94ID7 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-51
Identity = 102/188 (54.26%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEG-KE 60
           +A+LAGD+LL+ AF+HIA  T NVSS +I+RA+ ELA  IG +GL+ GQ++D++ EG  E
Sbjct: 183 VAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSE 242

Query: 61  VSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLT 120
           V L +LE+I++ KTA+L+E + V GAI+GGG D E+E+LR+Y R +G++ QVVDDI+ +T
Sbjct: 243 VDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVT 302

Query: 121 KSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLP 180
           KSS+ELGKT  KDL +DK  YPKLLG+E ++   ++L  +A E+L+ FDP K +PL  L 
Sbjct: 303 KSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALA 362

Query: 181 NYIANRIN 188
           NYIA+R N
Sbjct: 363 NYIAHRQN 370

[Close]

BLAST of Spg008476 vs. ExPASy Swiss-Prot
Match: Q42698 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-47
Identity = 97/188 (51.60%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEG-KE 60
           +A+LAGD+LL+ AF+HIA  T+ VSSE+I+R + ELA  IG +GL+ GQ++D+  EG  +
Sbjct: 170 VAVLAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIAD 229

Query: 61  VSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLT 120
           V L  LE+I++ KTA L+E S V GAI+GG +D +I +LR++ R +G++ QVVDDI+ +T
Sbjct: 230 VGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVT 289

Query: 121 KSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLP 180
           KSS+ELGKT  KDL +DK  YPKLLG++ ++   ++L  +A E+L+ FDP K +PL  L 
Sbjct: 290 KSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALA 349

Query: 181 NYIANRIN 188
           NYIA R N
Sbjct: 350 NYIAYRDN 357

[Close]

BLAST of Spg008476 vs. ExPASy Swiss-Prot
Match: P80042 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.4e-47
Identity = 99/188 (52.66%), Postives = 132/188 (70.21%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGK-E 60
           +A+LAGDSLL+ AF+HI   T  V+  +I+ A+ ELA  IG +GL+ GQ+ D+ C G   
Sbjct: 182 VAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNAS 241

Query: 61  VSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLT 120
           VSL  LE+I++ KTA L+E+S V GAI+GGG + E+E+LRR+ R +G++ QVVDDI+ +T
Sbjct: 242 VSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVT 301

Query: 121 KSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLP 180
           KSSEELGKT  KDL  DK  YPKLLG+E AK    EL  +A ++L  FD  K +PL  L 
Sbjct: 302 KSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALA 361

Query: 181 NYIANRIN 188
           +YIA R N
Sbjct: 362 DYIAYRDN 369

[Close]

BLAST of Spg008476 vs. ExPASy Swiss-Prot
Match: Q43133 (Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba OX=3728 GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.8e-47
Identity = 99/191 (51.83%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQN-VSSEKILRAIIELASGIGFDGLLGGQLLDLHCEG-- 60
           +A+LAGD+LLS AF+H+A  T + VS  +++RA+ ELA  IG +GL+ GQ++D+  EG  
Sbjct: 176 VAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLD 235

Query: 61  -KEVSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIV 120
              V L  L++I+L KTA L+EAS V G I+GGG D EIERLR++ R +G++ QVVDDI+
Sbjct: 236 LNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDIL 295

Query: 121 GLTKSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLY 180
            +TKSS+ELGKT  KDL +DK  YPKL+G+E ++   ++L  +A ++L  FD  KV+PL 
Sbjct: 296 DVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLL 355

Query: 181 HLPNYIANRIN 188
            L NYIANR N
Sbjct: 356 ALANYIANRQN 366

[Close]

BLAST of Spg008476 vs. ExPASy Swiss-Prot
Match: P34802 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2)

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-46
Identity = 99/192 (51.56%), Postives = 139/192 (72.40%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQN--VSSEKILRAIIELASGIGFDGLLGGQLLDLHCEG- 60
           +A+LAGD+LLS AF+H+A  T +  VS  +++RA+ ELA  IG +GL+ GQ++D+  EG 
Sbjct: 180 VAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGL 239

Query: 61  --KEVSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDI 120
              +V L  LE+I+L KTA L+EAS V GAI+GGG D EIERLR++ R +G++ QVVDDI
Sbjct: 240 DLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDI 299

Query: 121 VGLTKSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPL 180
           + +TKSS+ELGKT  KDL +DK  YPK++G+E ++   ++L  +A ++L  FD  KV+PL
Sbjct: 300 LDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPL 359

Query: 181 YHLPNYIANRIN 188
             L NYIA R N
Sbjct: 360 LALANYIAYRQN 371

[Close]

BLAST of Spg008476 vs. ExPASy TrEMBL
Match: A0A7J0EMI4 (Geranylgeranyl pyrophosphate synthase 1 OS=Actinidia rufa OX=165716 GN=Acr_05g0013330 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.8e-59
Identity = 117/187 (62.57%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEV 60
           +AILAGD+LLSLAF+H+A RT +VSS++++RAI EL S +G +GL+ GQ++D+  EGK+V
Sbjct: 181 VAILAGDALLSLAFEHVAARTVHVSSDRVVRAIAELGSSVGSEGLVAGQIVDICSEGKQV 240

Query: 61  SLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTK 120
           +L ELEYI++ KTA+L+EAS VCGAIMGGG+  E+ER+RRY R +G++ QVVDDI+ +TK
Sbjct: 241 NLRELEYIHVHKTAKLLEASVVCGAIMGGGNVSEVERMRRYARCIGLLFQVVDDILDVTK 300

Query: 121 SSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPN 180
           SSEELGKT  KDL SDKA YPKL+G++ AK+   ELM KAM+EL  FD  K +PLYHL N
Sbjct: 301 SSEELGKTAGKDLASDKATYPKLMGLDKAKKFAGELMDKAMKELEYFDAAKAAPLYHLAN 360

Query: 181 YIANRIN 188
           YIA R N
Sbjct: 361 YIAYRQN 367

[Close]

BLAST of Spg008476 vs. ExPASy TrEMBL
Match: A0A2P6RGN4 (Putative geranylgeranyl diphosphate synthase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0493061 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.1e-59
Identity = 114/184 (61.96%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 2   AILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEVS 61
           A+LAGD+LLSLAF+HIA +T NVS E++++ I+EL S +G  GL+ GQ++D+H EGKEV+
Sbjct: 175 AVLAGDALLSLAFEHIAAKTTNVSPERVIQTIVELGSAVGSLGLVAGQMVDIHSEGKEVT 234

Query: 62  LVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTKS 121
           L ELEYI++ KTARL+EAS VCGAIMGGG++ E+E++R+Y R +G++ QVVDDI+ +TKS
Sbjct: 235 LRELEYIHVHKTARLLEASVVCGAIMGGGNEIEVEKMRKYARCIGLLFQVVDDILDVTKS 294

Query: 122 SEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPNY 181
           SEELGKT  KDL SDKA YPKL+G+EGAK    EL+ +A+EEL+ FD  K +PLY+L NY
Sbjct: 295 SEELGKTAGKDLVSDKATYPKLIGIEGAKNFAAELVAQAIEELAYFDGAKAAPLYYLANY 354

Query: 182 IANR 186
           IA R
Sbjct: 355 IAKR 358

[Close]

BLAST of Spg008476 vs. ExPASy TrEMBL
Match: A0A2R6RJ49 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc05377 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.1e-59
Identity = 116/187 (62.03%), Postives = 153/187 (81.82%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEV 60
           +AILAGD+LLSLAF+H+A RT +VSS++++RAI EL S +G +GL+ GQ++D+  EGK+V
Sbjct: 181 VAILAGDALLSLAFEHVAARTVHVSSDRVVRAIAELGSSVGSEGLVAGQIVDICSEGKQV 240

Query: 61  SLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTK 120
           +L ELEYI++ KTA+L+EAS VCGAIMGGG+  E+ER+R+Y R +G++ QVVDDI+ +TK
Sbjct: 241 NLRELEYIHVHKTAKLLEASVVCGAIMGGGNVSEVERMRKYARCIGLLFQVVDDILDVTK 300

Query: 121 SSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPN 180
           SSEELGKT  KDL SDKA YPKL+G++ AK+   ELM KAM+EL  FD +K +PLYHL N
Sbjct: 301 SSEELGKTAGKDLASDKATYPKLMGLDKAKKFAGELMDKAMKELEYFDASKAAPLYHLAN 360

Query: 181 YIANRIN 188
           YIA R N
Sbjct: 361 YIAYRQN 367

[Close]

BLAST of Spg008476 vs. ExPASy TrEMBL
Match: A0A1R3GBT7 (Polyprenyl synthetase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27223 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.1e-59
Identity = 113/184 (61.41%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 2   AILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEVS 61
           AILAGD+LLSLAF+H+AE T  VS+++++RAI EL S +G +GL+ GQ++D+  EGKEVS
Sbjct: 181 AILAGDALLSLAFEHVAENTNYVSADRVVRAIAELGSAVGSEGLVAGQIVDIKSEGKEVS 240

Query: 62  LVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTKS 121
           L ELE+I+L KTA+L+EAS VCGAI+GG +DG++ER+R+Y R +G++ QVVDDI+ +TKS
Sbjct: 241 LKELEFIHLHKTAKLLEASVVCGAIVGGANDGDVERVRKYARSIGLLFQVVDDILDVTKS 300

Query: 122 SEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPNY 181
           SEELGKT  KDL SDKA YPKLLG++ AK+   +LM +A+EEL+ FDP K +PLYHL  +
Sbjct: 301 SEELGKTAGKDLVSDKATYPKLLGLDMAKKFAGDLMAQAVEELAYFDPAKAAPLYHLAKF 360

Query: 182 IANR 186
           I NR
Sbjct: 361 IYNR 364

[Close]

BLAST of Spg008476 vs. ExPASy TrEMBL
Match: A0A1R3KDG3 (Polyprenyl synthetase OS=Corchorus olitorius OX=93759 GN=COLO4_09040 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 9.0e-59
Identity = 112/184 (60.87%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 2   AILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKEVS 61
           AILAGD+LLSLAF+H+A+ T NVS+++++RAI EL S +G +GL+ GQ++D+  EGKEVS
Sbjct: 184 AILAGDALLSLAFEHVAKNTNNVSADRVVRAIAELGSAVGSEGLVAGQIVDIQSEGKEVS 243

Query: 62  LVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVGLTKS 121
           L ELE+I+L KTA+L+EAS VCGAI+GG +DG++ER+R+Y R +G++ QVVDDI+ +TKS
Sbjct: 244 LKELEFIHLHKTAKLLEASVVCGAIVGGANDGDVERVRKYARSIGLLFQVVDDILDVTKS 303

Query: 122 SEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYHLPNY 181
           SE LGKT  KDL SDKA YPKLLG++ AK+   +LM +A+EEL+ FDP K +PLYHL  +
Sbjct: 304 SEALGKTAGKDLVSDKATYPKLLGLDMAKKFGADLMAQAVEELAYFDPAKAAPLYHLAKF 363

Query: 182 IANR 186
           I NR
Sbjct: 364 IYNR 367

[Close]

BLAST of Spg008476 vs. TAIR 10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1 )

HSP 1 Score: 188.0 bits (476), Expect = 7.1e-48
Identity = 99/192 (51.56%), Postives = 139/192 (72.40%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQN--VSSEKILRAIIELASGIGFDGLLGGQLLDLHCEG- 60
           +A+LAGD+LLS AF+H+A  T +  VS  +++RA+ ELA  IG +GL+ GQ++D+  EG 
Sbjct: 180 VAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGL 239

Query: 61  --KEVSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDI 120
              +V L  LE+I+L KTA L+EAS V GAI+GGG D EIERLR++ R +G++ QVVDDI
Sbjct: 240 DLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDI 299

Query: 121 VGLTKSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPL 180
           + +TKSS+ELGKT  KDL +DK  YPK++G+E ++   ++L  +A ++L  FD  KV+PL
Sbjct: 300 LDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPL 359

Query: 181 YHLPNYIANRIN 188
             L NYIA R N
Sbjct: 360 LALANYIAYRQN 371

[Close]

BLAST of Spg008476 vs. TAIR 10
Match: AT2G18620.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-47
Identity = 100/190 (52.63%), Postives = 136/190 (71.58%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEG--- 60
           +A+LAGD+L+S AF+H+A  T  VS  +++RAI ELA  IG  GL+ GQ++DL   G   
Sbjct: 159 VAVLAGDALISFAFEHLATSTA-VSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQ 218

Query: 61  KEVSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVG 120
            +V L  LE+I++ KTA L+EA+TV GAI+GGG D E+E+LRR+ R +G++ QVVDDI+ 
Sbjct: 219 NDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILD 278

Query: 121 LTKSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYH 180
           +TKSSEELGKT  KDL +DK  YPKL+G+E +K    +L+  A E+L  FD ++V PL  
Sbjct: 279 VTKSSEELGKTAGKDLIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPLLA 338

Query: 181 LPNYIANRIN 188
           L NYIA R N
Sbjct: 339 LANYIAKRQN 347

[Close]

BLAST of Spg008476 vs. TAIR 10
Match: AT3G14530.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-46
Identity = 96/191 (50.26%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQN-VSSEKILRAIIELASGIGFDGLLGGQLLDLHCE--- 60
           MA+LAGD+LL+LAF+H+   +   V+ EK++RA++ELA  IG  GL+ GQ++DL  E   
Sbjct: 170 MAVLAGDALLALAFEHMTVVSSGLVAPEKMIRAVVELARAIGTTGLVAGQMIDLASERLN 229

Query: 61  GKEVSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIV 120
             +V L  LE+I+L KTA L+EA+ V G IMGGG + EIE+LR+Y R +G++ QVVDDI+
Sbjct: 230 PDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDIL 289

Query: 121 GLTKSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLY 180
            +TKS+EELGKT  KD+ + K  YP+L+G+EG++   ++L  +A E+L  FDP+K +PL 
Sbjct: 290 DVTKSTEELGKTAGKDVMAGKLTYPRLIGLEGSREVAEKLRREAEEQLLGFDPSKAAPLV 349

Query: 181 HLPNYIANRIN 188
            L +YIA R N
Sbjct: 350 ALASYIACRHN 360

[Close]

BLAST of Spg008476 vs. TAIR 10
Match: AT3G14550.1 (geranylgeranyl pyrophosphate synthase 3 )

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-45
Identity = 95/191 (49.74%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQN-VSSEKILRAIIELASGIGFDGLLGGQLLDLHCE--- 60
           MA+LAGD+LL+LAF+H+   +   V+ E+++RA++ELA  IG  GL+ GQ++DL  E   
Sbjct: 170 MAVLAGDALLALAFEHMTFVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLN 229

Query: 61  GKEVSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIV 120
             +V L  LE+I+L KTA L+EA+ V G IMGGG + EIE+LR+Y R +G++ QVVDDI+
Sbjct: 230 PDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDIL 289

Query: 121 GLTKSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLY 180
            +TKS+EELGKT  KD+ + K  YP+L+G+E +K   ++L  +A E+L  FDP+K +PL 
Sbjct: 290 DVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLV 349

Query: 181 HLPNYIANRIN 188
            L +YIA R N
Sbjct: 350 ALASYIACRHN 360

[Close]

BLAST of Spg008476 vs. TAIR 10
Match: AT2G18640.1 (geranylgeranyl pyrophosphate synthase 4 )

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-44
Identity = 97/188 (51.60%), Postives = 131/188 (69.68%), Query Frame = 0


Query: 1   MAILAGDSLLSLAFQHIAERTQNVSSEKILRAIIELASGIGFDGLLGGQLLDLHCEGKE- 60
           +AIL+G +LL+LAF+H+ E   +VSS+K++RA+ ELA  IG  GL+ GQ  DL  EG E 
Sbjct: 185 VAILSGGALLALAFEHLTE--ADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQ 244

Query: 61  --VSLVELEYIYLQKTARLIEASTVCGAIMGGGDDGEIERLRRYGRHVGVMCQVVDDIVG 120
             V L +LEYI++ KT  L+EAS V GA++GGG + EIE++R + R +G++ QVVDDI+ 
Sbjct: 245 NDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILD 304

Query: 121 LTKSSEELGKTPKKDLESDKAIYPKLLGMEGAKRSVKELMGKAMEELSCFDPTKVSPLYH 180
            TKSSEELGKT  KD  + K  YPK++G+E +K  V++L   A E L  FD  KV PL  
Sbjct: 305 ETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIA 364

Query: 181 LPNYIANR 186
           L N+IANR
Sbjct: 365 LTNFIANR 370

The following BLAST results are available for this feature:

BLAST of Spg008476 vs. NCBI nr


Match Name	E-value	Identity	Description
GFY87694.1	3.8e-59	62.57	geranylgeranyl pyrophosphate synthase 1 [Actinidia rufa]	[more]
XP_024191078.1	6.4e-59	61.96	geranylgeranyl pyrophosphate synthase 7, chloroplastic [Rosa chinensis] >PRQ4558...	[more]
PSS30043.1	6.4e-59	62.03	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1 like [Actini...	[more]
OMO55480.1	8.4e-59	61.41	Polyprenyl synthetase [Corchorus capsularis]	[more]
OMP05123.1	1.9e-58	60.87	Polyprenyl synthetase [Corchorus olitorius]	[more]

BLAST of Spg008476 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94ID7	1.0e-51	54.26	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=39...	[more]
Q42698	2.6e-47	51.60	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus OX=4...	[more]
P80042	3.4e-47	52.66	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 ...	[more]
Q43133	5.8e-47	51.83	Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis al...	[more]
P34802	1.0e-46	51.56	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplast...	[more]

BLAST of Spg008476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0EMI4	1.8e-59	62.57	Geranylgeranyl pyrophosphate synthase 1 OS=Actinidia rufa OX=165716 GN=Acr_05g00...	[more]
A0A2P6RGN4	3.1e-59	61.96	Putative geranylgeranyl diphosphate synthase OS=Rosa chinensis OX=74649 GN=RchiO...	[more]
A0A2R6RJ49	3.1e-59	62.03	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1 like OS=Acti...	[more]
A0A1R3GBT7	4.1e-59	61.41	Polyprenyl synthetase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27223 PE=3 SV...	[more]
A0A1R3KDG3	9.0e-59	60.87	Polyprenyl synthetase OS=Corchorus olitorius OX=93759 GN=COLO4_09040 PE=3 SV=1	[more]

BLAST of Spg008476 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36810.1	7.1e-48	51.56	geranylgeranyl pyrophosphate synthase 1	[more]
AT2G18620.1	3.5e-47	52.63	Terpenoid synthases superfamily protein	[more]
AT3G14530.1	1.7e-46	50.26	Terpenoid synthases superfamily protein	[more]
AT3G14550.1	1.9e-45	49.74	geranylgeranyl pyrophosphate synthase 3	[more]
AT2G18640.1	1.3e-44	51.60	geranylgeranyl pyrophosphate synthase 4	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000092	Polyprenyl synthetase	PFAM	PF00348	polyprenyl_synt	coord: 2..160 e-value: 1.2E-23 score: 83.5
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 1..187 e-value: 3.8E-48 score: 166.0
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 1..166
None	No IPR available	PANTHER	PTHR43281:SF24	GERANYLGERANYL PYROPHOSPHATE SYNTHASE 7, CHLOROPLASTIC	coord: 1..186
None	No IPR available	PANTHER	PTHR43281	FARNESYL DIPHOSPHATE SYNTHASE	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008476.1	Spg008476.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008299	isoprenoid biosynthetic process
molecular_function	GO:0004659	prenyltransferase activity