Spg008470 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008470
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease
Location	scaffold10: 35745736 .. 35749544 (+)
RNA-Seq Expression	Spg008470
Synteny	Spg008470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCATCCTAATTAAGGTTGCATTTGAATTCCTAGCCAAATTTTAAAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTTGTTTCCAAAATTGGACTTGGTTTTTGAAAACAAGGTGTAGAAGATTGATACTAAAACCAAGAAACTTATGGATGCATGTGTGTATAAGCTTAATTTTCAAAAACTAAAAACCAAAAACCAAATGGTTACACTACAAGAAAATATGTTTTCAGCGACAAGTTTTTAGTGACGCAGCAAAAATAAGCTGCTGAAGATGACTTTCAGTGGCATCGTATACCAAATGTCACAATTAAATATTTTCAGTGACACGATAAAATTAGATATCGCTAATAGTTTTAGAGACATATAAACGCGCGCCACAAAAATTTTTATTTTTAGCAACATGTATATCACGTTGCTAAAGAATGAGTTAGGCGCCACTAAAAAATATATTTTTATCACGATTTTAGCAACATTTTAAAAATAATTAGGGTTTTTTTTCCTCTTCCCTTTTCAATCGTGACTCCAAAACTGATGGGCTTCTAAAAATAACACTTGCCGTGAAAAACCCTTATCTCCCTCGATTTTTTCCCTCCCACACTCTACTGCTCACGCCGAAGTCGAGTCTCGCCGTGGAAGCAGCAGCGCCGATCGAAGTCTTGTCTCGCCGTGGAAGCAGCAGCGCCGAAGTCGAGTCTCACGCCGTGGAAGCAGCAGCGCCGAAAGTTCATCTCGTCACGCCGTGGAAGCAGCAACAGCGCCGTGGAGTCTCGCTGTCCGTTTTCCCTCTCTTCCTCGAGCAAATCGCCACCAAAGGTACCCGTTTTCCCGCCGCTCATACTCAGTACATAGGTGTTTTTTTTATGAACTTTCTCTGCTTTTTTAAAAACCTTTAAGATACCAAATTTTTCTGGTATAAATCAAGAATGAAATCCAAATTTTTAATTACTTGTCATGGCTGCTGGAAAAAAAAAAAAAAAAACATTAAAGAAAAAGCCTAAGTCTAAACCGGACTGTATTGGAAGGGAGTTCTAAAGGGTATATATATGCTTTAGTGTGTGGGATTTTCTAAATAAATGTGTGCAATTATTATGTATTTGAAAGAACATATAGCTTGGATTGTAGTCCATATGTGTATAGCTTGGTGTAGTTTTGTGTGTTATATAGCAACCTATATGTTAAAAAGGAATCTTAAGAAATGGAAAAAAGAGTGATGATTATAGAGGAAACACGACTGAAAAGAAAGAGGTGTAACCCAATTGCTCCCTAATTTACACTAAACTACCATGTCGAGCATAGACTTCACTTCCTAGTTCTATTTAATGTTTATGCCTATAGACATAAGCATTCAAAAAAAACATTTACTCGTCAAACCTTTAAGGGCCCTTGAAGAGGTGTAACCCTCTTATTATTGAGAAAAAAGCCTAAGTCTCTCAAGGCTAAAGGTAGAAAACTCTTATAGTTTTGACTTGATTGATTGAAAATTCCTCTAATACCTATTTAAAATTTGGCGAAAATGTTTCGTTTCTCTTAACTTTCTAGCCCATCTTTTTGTTTGTCAAATTTTGTACACTTTAAGAATTAAGAAATCTTTGTGGGCTTCACATAAATAACATTGATGGCTCTGGAATATATATAGGACAGTGTTGCCATTCTTCTTGAACTTGAATCTTATTTTGTTCACTCTCTCAAAAGTTAAGGTTGTCCATTTCTTTTATCTGCTTGTTTATTTGCCTTGGTATTATTGGAATTATAAATGCAGGTAAGGGAGCGAAGTCAGCAGAAGGGTGAAGTGAGTCCTTACCTTGTAGAACTACTACGTCTTGAAAACCAAGCAAAGCAACAAGGTCTTGGGCGTTGGAGAAAGGTTACTACTTAGACACTTGCATTTACACTCACTACCATTATTTGTTTACCAAGTGCTAGTCCACATCGAACAATTCTTTACCTCTGAATCCTTAGTAATTAATATCTTTGACAATAGATCTTGTAGGTCCTTTTTTTTTTGGCAATTTCTTTCCTCCCAATTGAAGTAGTTATTTAGTAATATTGAACTATGAAGGAAGGATATCAAACTCAATGTTTTAGTTGACTGCCAATGCTGAGGTGAAAATAATGATTTATATGGTTTTGCAAAATAATTATTTTTTGCTTATAAATGTTGTTGATTGTATTTTGTTGGTTCCTCTTGTCTTGATGAGTTTTTTGATCCCTTGTTAGATTCTAATGTTCTCTCTAAGCTTTTGTGGCAAAGCTTTTTGGTAACTACACATGGGGTCTTGTTTTACTTGATTGAAGATCCTTTTGTAGTTTGTTTCCTTAGAACTCAGGGACATAGTAGGACAACCTATAGAACAAATTCTGGTCAAGTAAGGTCGTTAGTTTGCTTCCTTTTGTGGGCTTTCTTTTTGTATGTCCTATTCTTTCATTTTTTTCCCAACGAAAGTTTGGTTATTTATAAAAGAAAAAAAATCCCTTCCCGGAGCTATGTACTTGACCACTCACTCTCCCTCTGTTTTAGGTTGTGGCTATCTTTGGCGTTTTTCAGCATCCTTGGCTTTGGGTACGTGGTTTTTAGCTAGTTTTGGGTTGGTTTTATAGCTTAATCAATTACCCATTGAAGTTAGCTTTCTTTTTCAAGGTACCCACCACGTTTGAAAGTCTAATTGTCGTTTGGAGCGGATTTGGAAGCTTGGACAGCAAGCTTGTTGGCTGATTTAGGTGAGTTTTTGGGAGTTAAACCTCTCCCCAAAAGTTAATTATCTTCTCGTGCCTTTTTATATTCAAAGAGGTTTATGAGTTGTAGTATGTTTTCCTCTCTTGTGTAGTTGGTTAGGAGCTTGGAAGCTAAAGAGTGTATTCGTTTTGCCAAGCAACTTAATAGCTAAAGTAAGTAGTTATTGGATTTCAGTTTCAAGCTTAGCCCCATAGCATGTTTGTTGGAATTGATAAATGACGAGTTTGAAGCTTGAATTAGTTTCTGTTGAGAATTGGCATGCTAGCATGAGTTAGTTGTGTGCCTTTAAATTGTCCTTGGATTTCGATGAGCATGATATAGTCGTTCGCTTAAGCATGTTGTGGAAAGTTGTGTTCTTTCTAGGAGTGTTAAATGATAATTTAGTACACCATCGTTTTCTGGATGGATATTTTTCCACTGTGATCTTTATGTTGTGTTCAATGTCTGAGCTAAAATATTTGAGCAGGTTTTGCATTTGTATAAATCGTGGAAGATTTTTGTATGATAGTATAAAAAATGTCATTTATGTTACTCTTATTGCCTCCTATAGGTTCCTGGTTCTTGTGTGTAGTTTTTGGTTATGTTCTTACATTTAGTTCTTTTGAGCATGAGATTGTTTAAGATGACTGATTAGATCATGTAAAGTAGTTTAGTTTCACTTGCTTTCCATTGAGTTTAGTTTCACTTGCTAAGATGAATGATTAGATCACGTAAGCACTTTAGTTATTTTAAGGAGTTTAGTGGTTTTGGTTGATAAGTTGAGTTTAGTTCTTTTAATAAGTTCGGTTGTTTGTGTCGATAAATTTTGTTGTTATGCTTGTATGCATTTTGAGTTATTTGAGCTCACTCATCGTAATGAAAAGAATGGATGGGTGGATGAGGCAAAGAAAAAACACGTAAGTAAAAACTTTGTTATGTTTTTTCTTTTAAATTTTTACAACATAATAATATTATTGTTACGTATTTTGCTATAGGACGAAATGGTGGCATTAAAAACTGCTTCATCACAAGACGGCGGTGAAACTCTTCAGGACAAAGAGATATGTGAACAAGTACTAGGCATGTGA

mRNA sequence

ATGCCTTTCATCCTAATTAAGCAGCGCCGATCGAAGTCTTGTCTCGCCGTGGAAGCAGCAGCGCCGAAGTCGAGTCTCACGCCGTGGAAGCAGCAGCGCCGAAAGTTCATCTCGTCACGCCGTGGAAGCAGCAACAGCGCCGTGGAGTCTCGCTGTCCGTTTTCCCTCTCTTCCTCGAGCAAATCGCCACCAAAGGTAAGGGAGCGAAGTCAGCAGAAGGGTGAAGTGAGTCCTTACCTTGTAGAACTACTACGTCTTGAAAACCAAGCAAAGCAACAAGGTCTTGGGCGTTGGAGAAAGTTTGTTTCCTTAGAACTCAGGGACATAGTAGGACAACCTATAGAACAAATTCTGGTCAATTGGTTAGGAGCTTGGAAGCTAAAGAGTGTATTCGTTTTGCCAAGCAACTTAATAGCTAAAGACGAAATGGTGGCATTAAAAACTGCTTCATCACAAGACGGCGGTGAAACTCTTCAGGACAAAGAGATATGTGAACAAGTACTAGGCATGTGA

Coding sequence (CDS)

ATGCCTTTCATCCTAATTAAGCAGCGCCGATCGAAGTCTTGTCTCGCCGTGGAAGCAGCAGCGCCGAAGTCGAGTCTCACGCCGTGGAAGCAGCAGCGCCGAAAGTTCATCTCGTCACGCCGTGGAAGCAGCAACAGCGCCGTGGAGTCTCGCTGTCCGTTTTCCCTCTCTTCCTCGAGCAAATCGCCACCAAAGGTAAGGGAGCGAAGTCAGCAGAAGGGTGAAGTGAGTCCTTACCTTGTAGAACTACTACGTCTTGAAAACCAAGCAAAGCAACAAGGTCTTGGGCGTTGGAGAAAGTTTGTTTCCTTAGAACTCAGGGACATAGTAGGACAACCTATAGAACAAATTCTGGTCAATTGGTTAGGAGCTTGGAAGCTAAAGAGTGTATTCGTTTTGCCAAGCAACTTAATAGCTAAAGACGAAATGGTGGCATTAAAAACTGCTTCATCACAAGACGGCGGTGAAACTCTTCAGGACAAAGAGATATGTGAACAAGTACTAGGCATGTGA

Protein sequence

MPFILIKQRRSKSCLAVEAAAPKSSLTPWKQQRRKFISSRRGSSNSAVESRCPFSLSSSSKSPPKVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRKFVSLELRDIVGQPIEQILVNWLGAWKLKSVFVLPSNLIAKDEMVALKTASSQDGGETLQDKEICEQVLGM

Homology

[Close]

BLAST of Spg008470 vs. NCBI nr
Match: KAF7833594.1 (ribonuclease TUDOR 1-like [Senna tora])

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-07
Identity = 33/53 (62.26%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRKFVSLELRDIVGQPIEQI 118
           KVRE+ QQKGEVSPYL ELLRLE QAKQ+GLGRW K        I   P+  I
Sbjct: 116 KVREQGQQKGEVSPYLAELLRLEEQAKQEGLGRWSKVPGAAEASIRNLPLSAI 168

[Close]

BLAST of Spg008470 vs. NCBI nr
Match: XP_038878676.1 (ribonuclease TUDOR 1-like [Benincasa hispida] >XP_038878677.1 ribonuclease TUDOR 1-like [Benincasa hispida])

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. NCBI nr
Match: XP_004138013.1 (ribonuclease TUDOR 1 [Cucumis sativus] >KGN63427.1 hypothetical protein Csa_014157 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. NCBI nr
Match: XP_022135072.1 (ribonuclease TUDOR 1-like [Momordica charantia] >XP_022135073.1 ribonuclease TUDOR 1-like [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. NCBI nr
Match: XP_008464356.1 (PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis melo] >ADN33852.1 short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] >KAA0057721.1 staphylococcal nuclease domain-containing protein 1 [Cucumis melo var. makuwa] >TYJ98406.1 staphylococcal nuclease domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. ExPASy TrEMBL
Match: A0A6J1C3S6 (Ribonuclease OS=Momordica charantia OX=3673 GN=LOC111007150 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. ExPASy TrEMBL
Match: A0A5D3BH85 (Ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00020 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. ExPASy TrEMBL
Match: E5GBL0 (Ribonuclease OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. ExPASy TrEMBL
Match: A0A0A0LRJ8 (Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G000020 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. ExPASy TrEMBL
Match: A0A1S3CL97 (Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103502266 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 65  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Sbjct: 117 KVREQGQQKGEVSPYLAELLRLEDQAKQQGLGRWSK 152

[Close]

BLAST of Spg008470 vs. TAIR 10
Match: AT5G07350.1 (TUDOR-SN protein 1 )

HSP 1 Score: 43.9 bits (102), Expect = 1.5e-04
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 65  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE  QQ + +VSPY+ ELL+LE  AKQ+G GRW K
Sbjct: 115 KVREPGQQNQDKVSPYIKELLQLEELAKQEGYGRWSK 151

[Close]

BLAST of Spg008470 vs. TAIR 10
Match: AT5G07350.2 (TUDOR-SN protein 1 )

HSP 1 Score: 43.9 bits (102), Expect = 1.5e-04
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 65  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVRE  QQ + +VSPY+ ELL+LE  AKQ+G GRW K
Sbjct: 115 KVREPGQQNQDKVSPYIKELLQLEELAKQEGYGRWSK 151

[Close]

BLAST of Spg008470 vs. TAIR 10
Match: AT5G61780.1 (TUDOR-SN protein 2 )

HSP 1 Score: 41.6 bits (96), Expect = 7.5e-04
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 65  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK 101
           KVR   QQ + +VSPY+ EL +LE QA+Q+G GRW K
Sbjct: 117 KVRRPGQQNQDKVSPYIAELEQLEEQAQQEGFGRWSK 153

The following BLAST results are available for this feature:

BLAST of Spg008470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7833594.1	6.8e-07	62.26	ribonuclease TUDOR 1-like [Senna tora]	[more]
XP_038878676.1	8.8e-07	86.11	ribonuclease TUDOR 1-like [Benincasa hispida] >XP_038878677.1 ribonuclease TUDOR...	[more]
XP_004138013.1	8.8e-07	86.11	ribonuclease TUDOR 1 [Cucumis sativus] >KGN63427.1 hypothetical protein Csa_0141...	[more]
XP_022135072.1	8.8e-07	86.11	ribonuclease TUDOR 1-like [Momordica charantia] >XP_022135073.1 ribonuclease TUD...	[more]
XP_008464356.1	8.8e-07	86.11	PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis melo] >A...	[more]

BLAST of Spg008470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3S6	4.3e-07	86.11	Ribonuclease OS=Momordica charantia OX=3673 GN=LOC111007150 PE=4 SV=1	[more]
A0A5D3BH85	4.3e-07	86.11	Ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00020 P...	[more]
E5GBL0	4.3e-07	86.11	Ribonuclease OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0LRJ8	4.3e-07	86.11	Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G000020 PE=4 SV=1	[more]
A0A1S3CL97	4.3e-07	86.11	Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103502266 PE=4 SV=1	[more]

BLAST of Spg008470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07350.1	1.5e-04	62.16	TUDOR-SN protein 1	[more]
AT5G07350.2	1.5e-04	62.16	TUDOR-SN protein 1	[more]
AT5G61780.1	7.5e-04	56.76	TUDOR-SN protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008470.1	Spg008470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016442	RISC complex
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003723	RNA binding