Spg008460 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008460
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	zinc finger CCCH domain-containing protein 53-like
Location	scaffold10: 33978867 .. 33983264 (-)
RNA-Seq Expression	Spg008460
Synteny	Spg008460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTCCTCCTTCTTCAAGACCATGGTGAAAAGGAAATGATCAGATTAACTTTTGGCCCTGAAACTCTAATCCACTCAATGATTCTCAAAGCCAGAAATGAATTGAACTTGAACCCATCAAATCATTCTTCTTCTTCTTCTTCAAGGCCAAGAATCAATCTCCCATCTCTTTCAATTCCAATTCCAACCCAACCCTTTTCAAACCCAGATGAATTTCTCAGCAATAGAGGGGTTGGAGGAGCTGATTTCGTTGAAGAACACCTCTCCTTCCTCGCCGACGGCTCTGTAAATGAAAACCCAGATTTCTTTTACTCTCATCCGACGGATTTTCCGGCGAGCCCGACCAGCGGAGGGAACTGGGCGGAGCTCGGATGGCGGCCGTGTTTGTATTATGCCAGAGGGTTCCTCCTCCCCGAAAGTCTCTTTTTTTTTAAAAAAAAAAAAAAAACAGAAGAAAGGAAAGAAAGAAGAAGAAGAGAAGAAGAGAAGAAGAAGAAAGAAAAAAAAAATTCCGACAATCGCTGCCGTCGCCGCCGGCAGCCGGCGGCGACCGGCTACCGGAGCTGAAGAAGATGGGATGGGGAAGGAAGAAGATGGAGGGAGAAAGAAGATGAGAAGAAAGAAGATGGAGAAGAAAGAGAGAGAAAGAATTTAAAAAAAATAATAAAATAATAATATTTTTAATATTTTTATATATTTTAATTTTAAAAAATTAAAAATTCATTTTTTTAATTAAAATAATAGTGCCACGTCAGCTTGCCGTTAGGGTTTAACAGAAAAATAGACGGTAGGGACCAAATTGCTCCTTATCTCAAATCTCAGGGGTATTTTTGTTGAGTTTGAAAACTCGGGGACCAAAGTGTAACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTTCCCTTTATTAAAATATATACTTAGTCCAAGTTTATTAAATGGATGCAATTACATGTCAATATCTAAAATATATTTAATTAGTGAATTATAATTATTTTATTTTATTTGGTATAATAATATTTCTTGGAAATCAAATATTACTCGTTTTGGTTCTGTATAAGAATTCTATCAGATTTTGATGGGAATAAAAAAAGAGGCTGGGTTTCGAATTCTCCCACGCTCAAATGTTGATGAACTTAAAAAAAAAAACAAAAATGAAAATACAACTATATTAGTGTCTTTAATTATCTCAATATTACATATATTTTGGTCCCTATGTTTTTAAATCGACTTTTTTTTTTTCAGAGTTTTGAGAAATAAGTTTAAAAGATTCTCGATATAAAATGAATTTTTAATATTGAATGGTTTTTAAATTAAAAAAATATTTTCTCTCTCTTATCTCCTCCATCCACCTTCCTTCCCTCTTCTTCTTCTTCCATTCTTCCTAAACCCAATTCCAAAATCTCTTGTTAATTCCTCAATCTTAGTCTCACTCCTCCCTCCCTTTTTCTTTCTACATTTCTTTTTCTTCTTTCAATCTCATCCAATTCCAAAATCTCATTCCCAGATCTCCCAATTCTCAATTCCTCATTTAAATTTTCGATATCGAAAATATTGTTACGTTCATCCTCCCCCTAAAGCTATCGTCAATAGAACCGCCACCCCGCCGTCCGAAACTACGAAGCCATAATTCCGTCAATAGTCCTACTGTCCGCCGAAATCTCTGTTGCTTCCTCTACTTTTGGACTATCATCATTGTTATAGGCAATTTTGGACCACCTCGATGTACAAGGAGTTGATGAGGACAACTGGAGAAAAATCGGGCTGGGAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCTCGACCCCCTGCTCGGCCTAGCCCGTCCGGCTCCGTTCGGTCCCTTCCGCCTCTGGCCGCCCCGATTTCCTCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGGTATTTATACATTTCTTCGCCACTGAAGAAGGGGACCCAAACTCTCGACTCTCTCCTCTTACCCTCTTGCTCTCCTCTTCCGTTTTCTGATTTAAGCATCGAAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCATGTGGAGCGAAGGTAATTTACCTAGCGAAATTTGATCATCAACAATCATTGTCCTAGACTGGATTGAGTTTAGGGAGGAGGGGAGAGCAAAAAGATATGTCCAGAAGACGGGGAAGAAAGGAGGAGAAAGAATAAGGTAGAGACTGGAGAGAGATTTATTTTTTTTAAATAATTATTTATGTACAAAAAACTAAAAATTTTAATTAAAAAATGAAAAGAAATAATATCAACAATCTTTTAATCATATTTCTCAAAACTCAGGCACTAAAAATGTCCATTATTTAAAAATCTCAGGATCAAATGCATCTATTCTCTAAAAATTTAGGCACCAAAAAGATATTTTTTTTCCTATGTTTTATAATCCAGTAAACACATACAAGAATACTTTTTTTTTAATAATTCTTCAAGTGAAAGTCTATTTGAACCTAAATATTGCACCCTTATTCAAATTTAAGGTAAAATTTTAAAATTAATTACGGGTACTTATCCAAGTTTAAAGACTAATTTAATGAAATTGAAAAATTAAGGTAAAAATACTATAAAAAAAATTATGGTAAAAAAGAGGTTTAATACACATTTGATTAGGTGTGTATTTGATATATGGCGAAGTTTCAAAGTGACACTGTTGGAAGTGCAACCAAAGTTCTACATTAGCTAGACAAGAGAATGATCATAGGTATATAAAGAATGACAAGTATCTCAATTGGTATGAGGTCTTTTGGGTGGATCCAAAAGCAAAGTCACGAGGGCTTATGTTCAAAGTGGACAATATCATACAGACCATTATAGAGATATGTGGGTGTTCGTTGTCCCTCACAATCCCCAATCATATGCCCATCAACATTTTACTAATATCATACTTAATTATACGCATTCAAATTCAATCGGATGTTATTCTCAATTTGTCATTACGTGCATAACTTGTTTGTCAGGGTTGTTTCAACGAACATTGCATTAAATGTTAATTGATATTTTTTTATTTTTTCTATTTTTGAGTTCAAATAACATCTGAGTTGGGAGAGATTCGTATTTTTGACCATTGGTCAAGAGCATATATGCGTAAACTGGTAGATTTTGAATATCTATATTAATAATATTATTACTTGTATTCTTTGAAAATCAAAAGTAAAGATAAATTTTAAAGTATTTAATGTTATCAATAAGCTACCACACCTAGTTTCTACTATCTGTCACTTGTCTAATTTAATTTATATAACTTAGAAAGTCGTGTACTTTTAAACTAATGAAATTGTTGTGTCTTGAAGACAACTAATGAAATTGTTTAGGCATATGTTAAACTACCAACTAATAGAATAATGGCTTTTTAAAAAAAGAAGCCACCTGGAATTTTATAATGAACATCCCAAAAATTGATGGGTTTGTTTTGTTTTCGAAGAAATTGATTTATTTGTGTTGAATATAATTATATGATCAGTAACCTAAACATGATGAAAATAAGCATAATTTTCAAAAACCAAATGGTTAAATTCCTCCTCCCCTCTTCCTTGTTGTTTGTAGGTTTTCCATTCTTTCTCTTTTTCCTCTTTTTTTTGTCTGCAGGTTTGATTTCTCTCATTCAAGTCTTAATCGAATATTACTCAATATTTTTTCTACAGGTTTTTGATCACTCGTTCGCTTCTCAATTTAGCGAGGTTTGTGTTTACGATCTCTGTCATTGACTTTGTTTTCTCGATTTTTAAAGATATTCAACACTTGTCTTATAGAACTATAGTCCTTCATATTAATAATGGTCTACTTATTTTATTTTTTTAACACTTACATGTGGATATTCTTCATTAGAGATAGGAGACTAGGTCTTCTTCAGAAGTGACATTCTAACTAAAGTGGACTGGATGTTGTATTTTAGACATTTTGGTGAGTTTCAAAACTATCTTTCCTCCTTGTTGTTGTTATTATTATTATTGTTATTATTTGTCTTAGCTCCGTGTATTTTACATTGCTTTTGCAGATCGATGGTCACTACAATTCTTGATGGCATGCTGGACGTTCCTGCACTTTGTTTCTTGTTTCACCACAAGTGATTGTATTTAAAATCAACATTTTGTATCAAGCAAATTGTAAAGATGCTTTAGTTCCACGAGGAATTTTTTTGACTAAGGTTAGGAGGTCCTTGTGTTTGTTCATATGTTGTGGAGTTTATGTAATTTGTAAAGGTTAGATAGTCTTGAACATTGAAAAGCTTGTCGAGTTTGTACGTTATATTTTCTTTGATTCAT

mRNA sequence

ATGGGCCTCCTCCTTCTTCAAGACCATGGTGAAAAGGAAATGATCAGATTAACTTTTGGCCCTGAAACTCTAATCCACTCAATGATTCTCAAAGCCAGAAATGAATTGAACTTGAACCCATCAAATCATTCTTCTTCTTCTTCTTCAAGGCCAAGAATCAATCTCCCATCTCTTTCAATTCCAATTCCAACCCAACCCTTTTCAAACCCAGATGAATTTCTCAGCAATAGAGGGGTTGGAGGAGCTGATTTCGTTGAAGAACACCTCTCCTTCCTCGCCGACGGCTCTGTAAATGAAAACCCAGATTTCTTTTACTCTCATCCGACGGATTTTCCGGCGAGCCCGACCAGCGGAGGGAACTGGGCGGAGCTCGGATGGCGGCCGTGA

Coding sequence (CDS)

ATGGGCCTCCTCCTTCTTCAAGACCATGGTGAAAAGGAAATGATCAGATTAACTTTTGGCCCTGAAACTCTAATCCACTCAATGATTCTCAAAGCCAGAAATGAATTGAACTTGAACCCATCAAATCATTCTTCTTCTTCTTCTTCAAGGCCAAGAATCAATCTCCCATCTCTTTCAATTCCAATTCCAACCCAACCCTTTTCAAACCCAGATGAATTTCTCAGCAATAGAGGGGTTGGAGGAGCTGATTTCGTTGAAGAACACCTCTCCTTCCTCGCCGACGGCTCTGTAAATGAAAACCCAGATTTCTTTTACTCTCATCCGACGGATTTTCCGGCGAGCCCGACCAGCGGAGGGAACTGGGCGGAGCTCGGATGGCGGCCGTGA

Protein sequence

MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSIPIPTQPFSNPDEFLSNRGVGGADFVEEHLSFLADGSVNENPDFFYSHPTDFPASPTSGGNWAELGWRP

Homology

[Close]

BLAST of Spg008460 vs. NCBI nr
Match: KAG7032686.1 (Zinc finger CCCH domain-containing protein 46, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.2 bits (435), Expect = 3.0e-39
Identity = 99/145 (68.28%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPE+LIHS+ILKA+ ELNLNP    SS SSRPRINLP LSI
Sbjct: 28  MGLLLLQDHGEKEMIRLAFGPESLIHSLILKAKTELNLNP----SSCSSRPRINLPPLSI 87

Query: 61  PIPTQPFSN-PDEFLSNRGVGGADFVEE-----HLSFLADGSVNENPDFFYSHPTDFPAS 120
           PIP   FSN PD        GGADFV+E     HL FL DGSVNENPDFFY++P DFPAS
Sbjct: 88  PIPNPNFSNHPD--------GGADFVDEFQIQDHLCFLTDGSVNENPDFFYTNPADFPAS 147

Query: 121 PT------SGGNWAE-----LGWRP 129
           PT       GGNWAE     LGWRP
Sbjct: 148 PTDGDVLYGGGNWAEEAGLGLGWRP 160

[Close]

BLAST of Spg008460 vs. NCBI nr
Match: XP_023554305.1 (zinc finger CCCH domain-containing protein 46-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 3.0e-39
Identity = 99/145 (68.28%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPE+LIHS+ILKA+ ELNLNP    SS SSRPRINLP LSI
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPESLIHSLILKAKTELNLNP----SSCSSRPRINLPPLSI 85

Query: 61  PIPTQPFSN-PDEFLSNRGVGGADFVEE-----HLSFLADGSVNENPDFFYSHPTDFPAS 120
           PIP   FSN PD        GGADFV+E     HL FL DGSVNENPDFFY++P DFPAS
Sbjct: 86  PIPNPNFSNHPD--------GGADFVDEFQIQDHLCFLTDGSVNENPDFFYTNPADFPAS 145

Query: 121 PT------SGGNWAE-----LGWRP 129
           PT       GGNWAE     LGWRP
Sbjct: 146 PTDGDVLYGGGNWAEESGLGLGWRP 158

[Close]

BLAST of Spg008460 vs. NCBI nr
Match: KAG6601989.1 (Zinc finger CCCH domain-containing protein 46, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 3.0e-39
Identity = 99/145 (68.28%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPE+LIHS+ILKA+ ELNLNP    SS SSRPRINLP LSI
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPESLIHSLILKAKTELNLNP----SSCSSRPRINLPPLSI 85

Query: 61  PIPTQPFSN-PDEFLSNRGVGGADFVEE-----HLSFLADGSVNENPDFFYSHPTDFPAS 120
           PIP   FSN PD        GGADFV+E     HL FL DGSVNENPDFFY++P DFPAS
Sbjct: 86  PIPNPNFSNHPD--------GGADFVDEFQIQDHLCFLTDGSVNENPDFFYTNPADFPAS 145

Query: 121 PT------SGGNWAE-----LGWRP 129
           PT       GGNWAE     LGWRP
Sbjct: 146 PTDGDVLYGGGNWAEEAGLGLGWRP 158

[Close]

BLAST of Spg008460 vs. NCBI nr
Match: XP_022963521.1 (zinc finger CCCH domain-containing protein 46-like [Cucurbita moschata] >XP_022963529.1 zinc finger CCCH domain-containing protein 46-like [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 98/145 (67.59%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPE+LIHS+ILKA+ ELNLNP    SS SSRPRINLP LSI
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPESLIHSLILKAKTELNLNP----SSCSSRPRINLPPLSI 85

Query: 61  PIPTQPFSN-PDEFLSNRGVGGADFVEE-----HLSFLADGSVNENPDFFYSHPTDFPAS 120
           PIP   FSN PD        GGADFV+E     HL FL DGSVNE+PDFFY++P DFPAS
Sbjct: 86  PIPNPNFSNHPD--------GGADFVDEFQIQDHLCFLTDGSVNESPDFFYTNPADFPAS 145

Query: 121 PT------SGGNWAE-----LGWRP 129
           PT       GGNWAE     LGWRP
Sbjct: 146 PTDGDVLYGGGNWAEEAGLGLGWRP 158

[Close]

BLAST of Spg008460 vs. NCBI nr
Match: XP_022990617.1 (zinc finger CCCH domain-containing protein 46-like [Cucurbita maxima])

HSP 1 Score: 168.3 bits (425), Expect = 4.3e-38
Identity = 98/145 (67.59%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPE+LIHS+ILKA+ ELNLNP    SS SSRPRINLP LSI
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPESLIHSLILKAKTELNLNP----SSCSSRPRINLPPLSI 85

Query: 61  PIPTQPFSN-PDEFLSNRGVGGADFVEE-----HLSFLADGSVNENPDFFYSHPTDFPAS 120
           PIP   FSN PD        GGADFV+E     HL FL DGSVNENPDFFY++P DF AS
Sbjct: 86  PIPNPNFSNHPD--------GGADFVDEFQIQDHLCFLTDGSVNENPDFFYTNPADFLAS 145

Query: 121 PT------SGGNWAE-----LGWRP 129
           PT       GGNWAE     LGWRP
Sbjct: 146 PTDGDVLYGGGNWAEEAGLGLGWRP 158

[Close]

BLAST of Spg008460 vs. ExPASy Swiss-Prot
Match: Q9SV09 (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.3e-12
Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPETL+HS+I+KA+ EL L   + S                
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLMNCSRS---------------- 85

Query: 61  PIPTQPFSNPDEFLSNRGVGGADFVEEHLSFLADGSVN--------ENPDFFYSHPTDFP 115
                P+S+ DE +S +   G+      L F A+G  +        E  D   S  TDF 
Sbjct: 86  -----PWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 126

[Close]

BLAST of Spg008460 vs. ExPASy Swiss-Prot
Match: Q10LZ9 (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSS------------ 60
           MGLLL+QDHG+KEMIRL FGPE L+HS++ +AR EL L P   ++SSS            
Sbjct: 26  MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPQAASSSPTVPAAHSPFLL 85

Query: 61  ---SRPRINLPSLSIPIPTQPFSNPDEFLSNRGVGGA 83
              +  R   PS S     QPFS      ++ G GGA
Sbjct: 86  SRQNSGRCPAPSPSSWAQAQPFSRS----NSMGNGGA 118

[Close]

BLAST of Spg008460 vs. ExPASy Swiss-Prot
Match: Q10M00 (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 38/80 (47.50%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 1  MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
          MGLLL+QDHG+KEMIRL FGPE L+HS++ +AR EL L P     SSSS           
Sbjct: 26 MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSS----------- 85

Query: 61 PIPTQPFSNPDEFLSNRGVG 81
            PT P ++    LS +  G
Sbjct: 86 --PTVPAAHSPFLLSRQNSG 92

[Close]

BLAST of Spg008460 vs. ExPASy Swiss-Prot
Match: Q0D3J9 (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-09
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1  MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSS 50
          MG LL+QDHGEKEMIRL FGPE L+H+++ KAR EL L P++   + +S
Sbjct: 26 MGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGLLPASGPGTPTS 74

[Close]

BLAST of Spg008460 vs. ExPASy TrEMBL
Match: A0A6J1HGB6 (zinc finger CCCH domain-containing protein 46-like OS=Cucurbita moschata OX=3662 GN=LOC111463824 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.4e-39
Identity = 98/145 (67.59%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPE+LIHS+ILKA+ ELNLNP    SS SSRPRINLP LSI
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPESLIHSLILKAKTELNLNP----SSCSSRPRINLPPLSI 85

Query: 61  PIPTQPFSN-PDEFLSNRGVGGADFVEE-----HLSFLADGSVNENPDFFYSHPTDFPAS 120
           PIP   FSN PD        GGADFV+E     HL FL DGSVNE+PDFFY++P DFPAS
Sbjct: 86  PIPNPNFSNHPD--------GGADFVDEFQIQDHLCFLTDGSVNESPDFFYTNPADFPAS 145

Query: 121 PT------SGGNWAE-----LGWRP 129
           PT       GGNWAE     LGWRP
Sbjct: 146 PTDGDVLYGGGNWAEEAGLGLGWRP 158

[Close]

BLAST of Spg008460 vs. ExPASy TrEMBL
Match: A0A6J1JJA3 (zinc finger CCCH domain-containing protein 46-like OS=Cucurbita maxima OX=3661 GN=LOC111487446 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38
Identity = 98/145 (67.59%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPE+LIHS+ILKA+ ELNLNP    SS SSRPRINLP LSI
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPESLIHSLILKAKTELNLNP----SSCSSRPRINLPPLSI 85

Query: 61  PIPTQPFSN-PDEFLSNRGVGGADFVEE-----HLSFLADGSVNENPDFFYSHPTDFPAS 120
           PIP   FSN PD        GGADFV+E     HL FL DGSVNENPDFFY++P DF AS
Sbjct: 86  PIPNPNFSNHPD--------GGADFVDEFQIQDHLCFLTDGSVNENPDFFYTNPADFLAS 145

Query: 121 PT------SGGNWAE-----LGWRP 129
           PT       GGNWAE     LGWRP
Sbjct: 146 PTDGDVLYGGGNWAEEAGLGLGWRP 158

[Close]

BLAST of Spg008460 vs. ExPASy TrEMBL
Match: A0A1S3CK14 (zinc finger CCCH domain-containing protein 53-like OS=Cucumis melo OX=3656 GN=LOC103501343 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-29
Identity = 94/183 (51.37%), Postives = 102/183 (55.74%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSS----------- 60
           MGLLLLQD  EKEMIRL FGPE L+HS+ILKARNELN NPS+ SSSSSS           
Sbjct: 27  MGLLLLQDQSEKEMIRLAFGPEPLLHSIILKARNELNFNPSSASSSSSSSSSSSTSSSSS 86

Query: 61  ---RPRINLPSLSIPIPTQPFSNP-DEFL----------------SNRGVG-GADFVEE- 120
              R ++NLPSL IP+P   F NP DEFL                +  GVG G DFV+E 
Sbjct: 87  SSLRHKLNLPSLEIPLPNHSFPNPDDEFLITPTNNNNNPKPFYNTNGGGVGAGGDFVDEF 146

Query: 121 -----------------HLSFLADGSVNENPDFFYSHPTDFPASPTSGGNWAE-----LG 129
                            HLSFL D SVNENPDFFY      PASP  GGNW E     LG
Sbjct: 147 QFQDHHHQHQHQHQHQHHLSFLTDCSVNENPDFFY----PAPASPV-GGNWPEDGGLGLG 204

[Close]

BLAST of Spg008460 vs. ExPASy TrEMBL
Match: A0A5D3BN92 (Zinc finger CCCH domain-containing protein 53-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75441G00150 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 9.0e-26
Identity = 83/152 (54.61%), Postives = 92/152 (60.53%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSS----------- 60
           MGLLLLQD  EKEMIRL FGPE L+HS+ILKARNELN NPS+ SSSSSS           
Sbjct: 26  MGLLLLQDQSEKEMIRLAFGPEPLLHSIILKARNELNFNPSSASSSSSSSSSSTSSSSSS 85

Query: 61  --RPRINLPSLSIPIPTQPFSNP-DEFL---SNRGVGGADFVEEHLSFLADG--SVNENP 120
             R ++NLPSL IP+P   F NP DEFL   +N       F   +   +  G  SVNENP
Sbjct: 86  SLRHKLNLPSLEIPLPNHSFPNPDDEFLITPTNNNNNPKPFYNTNGGGVGAGDCSVNENP 145

Query: 121 DFFYSHPTDFPASPTSGGNWAE-----LGWRP 129
           DFFY      PASP  GGNW E     LGWRP
Sbjct: 146 DFFY----PAPASPV-GGNWPEDGGLGLGWRP 172

[Close]

BLAST of Spg008460 vs. ExPASy TrEMBL
Match: A0A6J1CKL3 (zinc finger CCCH domain-containing protein 53-like OS=Momordica charantia OX=3673 GN=LOC111012001 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 72/145 (49.66%), Postives = 85/145 (58.62%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGL+LLQDHGEKEMIRL FGPE LIHS++LKA+ EL          +SSRP+IN P+L+I
Sbjct: 26  MGLILLQDHGEKEMIRLAFGPEALIHSIVLKAKTELKF--------TSSRPKINHPALAI 85

Query: 61  PIPTQPFSNPDEFLSNR--GVGGADFVEE-----HLSFLADGSVNENPDFFYSHPTDFPA 120
           P P   F  P  F +      GG D ++E     HLSF       ENPDFFY  P   PA
Sbjct: 86  PNPDDFFIAPQNFSAAACGNGGGGDGIDELQLQDHLSF-------ENPDFFYPPP---PA 145

Query: 121 SPTSG-----GNWAE-----LGWRP 129
           SPT G     G W++     LGWRP
Sbjct: 146 SPTGGDRMFAGGWSDEVGLGLGWRP 152

[Close]

BLAST of Spg008460 vs. TAIR 10
Match: AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-13
Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPETL+HS+I+KA+ EL L   + S                
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLMNCSRS---------------- 85

Query: 61  PIPTQPFSNPDEFLSNRGVGGADFVEEHLSFLADGSVN--------ENPDFFYSHPTDFP 115
                P+S+ DE +S +   G+      L F A+G  +        E  D   S  TDF 
Sbjct: 86  -----PWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 126

[Close]

BLAST of Spg008460 vs. TAIR 10
Match: AT3G51950.2 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-13
Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 1   MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNELNLNPSNHSSSSSSRPRINLPSLSI 60
           MGLLLLQDHGEKEMIRL FGPETL+HS+I+KA+ EL L   + S                
Sbjct: 26  MGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLMNCSRS---------------- 85

Query: 61  PIPTQPFSNPDEFLSNRGVGGADFVEEHLSFLADGSVN--------ENPDFFYSHPTDFP 115
                P+S+ DE +S +   G+      L F A+G  +        E  D   S  TDF 
Sbjct: 86  -----PWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFL 126

[Close]

BLAST of Spg008460 vs. TAIR 10
Match: AT3G63450.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-09
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNEL 37
          +GLLLLQDHGEKEMIRL FGP+ L+HS+I KA+ +L
Sbjct: 26 IGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDL 61

[Close]

BLAST of Spg008460 vs. TAIR 10
Match: AT3G63450.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-09
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNEL 37
          +GLLLLQDHGEKEMIRL FGP+ L+HS+I KA+ +L
Sbjct: 26 IGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDL 61

[Close]

BLAST of Spg008460 vs. TAIR 10
Match: AT3G63450.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-09
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MGLLLLQDHGEKEMIRLTFGPETLIHSMILKARNEL 37
          +GLLLLQDHGEKEMIRL FGP+ L+HS+I KA+ +L
Sbjct: 26 IGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDL 61

The following BLAST results are available for this feature:

BLAST of Spg008460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032686.1	3.0e-39	68.28	Zinc finger CCCH domain-containing protein 46, partial [Cucurbita argyrosperma s...	[more]
XP_023554305.1	3.0e-39	68.28	zinc finger CCCH domain-containing protein 46-like [Cucurbita pepo subsp. pepo]	[more]
KAG6601989.1	3.0e-39	68.28	Zinc finger CCCH domain-containing protein 46, partial [Cucurbita argyrosperma s...	[more]
XP_022963521.1	1.1e-38	67.59	zinc finger CCCH domain-containing protein 46-like [Cucurbita moschata] >XP_0229...	[more]
XP_022990617.1	4.3e-38	67.59	zinc finger CCCH domain-containing protein 46-like [Cucurbita maxima]	[more]

BLAST of Spg008460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SV09	9.3e-12	40.16	Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q10LZ9	1.5e-09	44.33	Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX...	[more]
Q10M00	1.9e-09	47.50	Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX...	[more]
Q0D3J9	5.6e-09	59.18	Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Spg008460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGB6	5.4e-39	67.59	zinc finger CCCH domain-containing protein 46-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JJA3	2.1e-38	67.59	zinc finger CCCH domain-containing protein 46-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A1S3CK14	5.1e-29	51.37	zinc finger CCCH domain-containing protein 53-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5D3BN92	9.0e-26	54.61	Zinc finger CCCH domain-containing protein 53-like OS=Cucumis melo var. makuwa O...	[more]
A0A6J1CKL3	2.3e-21	49.66	zinc finger CCCH domain-containing protein 53-like OS=Momordica charantia OX=367...	[more]

BLAST of Spg008460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51950.1	6.6e-13	40.16	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ...	[more]
AT3G51950.2	6.6e-13	40.16	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ...	[more]
AT3G63450.1	3.4e-09	72.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G63450.2	3.4e-09	72.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G63450.3	3.4e-09	72.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..66
None	No IPR available	PANTHER	PTHR24009	RNA-BINDING (RRM/RBD/RNP MOTIFS)	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008460.1	Spg008460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding