Spg008407 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008407
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Locationscaffold10: 32405490 .. 32415274 (+)
RNA-Seq ExpressionSpg008407
SyntenySpg008407
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACAGGTTATCAAAGTGAAGTTTGACAAGAGGAACAATTTTTTCTTGTTTAGTACAAGGTTTCTGGTATTGAACATGAGAATAAAGTATTCTGAGGCATCACTTATGTTCATGGACTAAGGTTTTCTATACCATATTACAAAACCATGAGTTTTATGTTTGTCTATCTCTTCTTATGCTTTTTATTTTTATATGCAATTTCATTTTGAGTATAGTTAATCTTATGTTTTAACCTAGGATGTTTTTATATTTTACTAAGAAATATAATTTGTTACTTGTATTGGAAAAAATATTATTTCAATTTAAATAAAAATAAAAACAAATAATTTCAAATGAGTATAAAATAATAGAATAAAAATATGTTAAATTAAAAAAAAAAATGATGAATCAAGTCTAAAAAACGTTAGAGAAGATAAATAGTTAATTATCTTCAATTTATAATCTGTTTTATAGTGAAAAACGGTTAAGATTATTTTTTAATCACTGCTTCCAAAATCAACGCATCTAAATGCACCTAAAAAGATGGTAAGTGAGGTTAAATGGATTGACATGTGATTCGTATTTCGTATTTCAAATTTCAAAAGAAAAAAAAAAGTATGTGATTCTTCAAAATATAAGGGTAGGAAATTTTGAAGGTAAAGATTTCTCAAAAAATAAAAAAAAAAATAAAAAAAAAATTGAAGATAAGGAATTAAGGATCAGATTCAGAAACATTGCAAGCGGGAATACCAAATGGAATTTCTAAAAAAAAATATATAACCAACAGAGAAACTTGGTTGGCAAGATCTAAGAAGAAAAGCATTGATGTTGTGTTTGGAACCTTCTGATTTTGAAAGATAAATTTGAAATGAATTCTGTTGTTTGGTATCAAATGAGAGAGAATGATTTGAAATTTAAAATGATTTCAAATCATGTTTTTATGTAAAAAAATTTCTCAACTAAAACTATCAGATTTTGCAGGATTTCAGGGGATGAGAGTTAAATTATTTATTTATCCTTATCATATTTTTATTTTCTATTAATAACTTAAATTAAAAGTCTATAATAATTCATTTACTTTATTTTCTTCTCCAATTACTATTTAAACACAAAATTTTAAATACATTTTTTTTTTTTTTTTGACAATCACAAAATTTTAAATACATTCGTGCTAAATCTTTCTTGTTTTAAATAAGATAAAGAATTTTAAATCATTTTTTGAATTTTAAATCACATGATTTAAAATACAAAGGTGGTAGTGCTCTTCACGAACAAGACTATAAGAGGTCGTTTCTTTCAGGGTTTGTCTTTCACGCATGGCGATGCTCCTCGATCCACACTCACCGTTCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATTACGCCAAGTGAGTAACAAGCCTTCGATCATTATCTCTTCTTTCGGATTCTCCTTGATTTCCCCAATTACCACATAGATCTTTGAATTAGACCCCTCTTTTCCTGCAATCGATTACTCCTCATCGCGTCAGTATTCAACTTGTAAGTATTTTAAAAGGTTGGTTCCCATGAAGGACTCCATTCATCCTTTCTTTCTGCGTTTTTATTGGGGTTTTGACACAATCTTTTCTGGTAGGTCAAATTTTTTAATGGAACCAAATAATCGGAGACCTGCCCAAGGCAGAGAACCTTTCAGCGCTGCCGGAGGTCCCCAATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGGTCTCACGATGCTCGACAACGAATTGTTGAGAAGATGTATGATTTCTTACTTTTTTTTTATTGCTTTTCGATCTACCATTATATATTATTTGAGAAAAGTGTTTGAGCTCTTATAACTTTTTGTTTCATAGTTTATTGCTTAGGTATAGTTACTCTGGGATGGTTTTGTCAAGTAAACTATGAACAGAAAAACTTTGGAAATATAGAACTATCTTCGACCTTTTTCTTAGATTTTGGGTATAACTGATAGATGCGAAAACAGTTCGTTAAAGATAAGAAGCATAAGTTATTTGTCGCAGTATGGATCTTGTTGAATTTTTCTTGAGCGTTCCGACGTACATTCCTTCAGAATATCTAATATTTTGAATCATGGACATGGATTACTCTGTGGTTTTCCTTTTGCGAACAGCTTCCCATGCTTTTTGGTTTAATAAACTAGTTAGTCATTATGTTTTCCATTTTTATGTTAGAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGGATTGAGTGAGCTGAGGAAGATTGCTGAAAGGTTTGAGGAAAAGGTTTATACTGGCGCCACCAGTCAGGTATTTCCTTTTCACTTTGTTATATTTTAAATCAAGGAATGTAAGAATAAACGTATTCTCATTTATGTTTATCCCATTTGCTGATAACAACAAGCTTCCAATTTGATTTGGTGCCTGAGATTTAGTTGTGTACTGAAGCATACTTCTCTATAACGACTTGTTCATGTGGACTTTTAATAAATCCGGTTTTAGTATGTTATGTATTCTTGTACTAAATACAACATTGTTTTAGCGATCTCTTGAGTACTCTCACCAATTCTATTATTATCTTCTGATTTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGACTATGGTGCCTGTCAATGAGCCTCTGGATTCTGGTAATGCATCAACAGACAATCTGCGACTATGTTGTACATGATGAAAATTTCACCAGCATTTTTTAAGCCAATTTGTGAATGAATTTCTTGTTATAGAGTTTCTGGTTTCTCGGTTCCCTTCTTAAATATACAAGTAGGAGTTAGTCTACAACGAATTTCTTACTGTGTTGTGTGTGACGCATAATTCATGTGTTTGGAGTGCATTGTATGACGCACAATTCATGTGTTTGGAGTGCATTGTATGACGCACAATTCATCTCATCAATTCATGTGTTAAGAGTGCATTGGATGACGCACAATTCATGTGTTAAGAGTGCATTGGATGACGCACAATTCATGTGTTAAGAGTGCATTACATGACGTGAAAATCATGTTTCGGGTAGAGGTGCGTTGCATGACATGAAAATCATGTTTCGGGTAGAGGTGCGTTGCATGATGCGGGGTGAATGTGTTGAGTGCAAAGCATGTTGCATGAATTCATGTGTTGTCAGGTATAGTTGTTGTTTGCTTAAGTATGCTAGCGGTATTCTCGTGTTGTTGGTTTCTGAATAAGCGTTGAATGTTTGTGAGAAGTATGATGATTGTGTTATTTGTTGCTTGATGGCTCACCCAGTGTGAGCTACTCACCAATATCATGGTTGTACTAACCCTGTTTCTCTTTTCTCCCAAACTATACTTTGCAGATGAAGAGGATCATTATGAGCCCAATGATGCTAAGGTGGAGACTCGTGAGGAATGACTGACCTGAGTAGTTATCTCTTTATTTTACTTTTCTTTCTTGAGATAAGATCCTAGTTTCTCGTTTTTAGACTTTAGGTGGATTTAGACTTTTGGCTCTTTTGTAATAATTTTAAATCGTGAATCAGTTAATCATTTTCTTGATCTCGTTGTTCATAGTTTAATAAAGCAAGGTTATAAAGTTTACTTAGTTAAAACTTTCTACTAGTTGTTCTACTTAATTTGATTAGTAATTGATGCGAGATCGTTTTTTTTTTTTTGAGCCTGTGTTGGTTGATCGGGGTTTAAGTGAGGTTGTAGTTGAGTGGTTTTACGTATGGAAGTGTGCTTTTCTTGTTTAGCAGTTTAAACAAAATTTGGGTTAATCTTATGTAGGTATGTTGTCGAAATTTTCGAAGCATTCGGTTAGAATTGCGTTGGTGGCTTAGTAATGTCTTTTATGTAGTAAGGTAATACTTAAGACAATGAAAGTGGCTCTTCAAATTTTGACTTTACAAAATATACAGAATATATTTAAAAATTAAACTTTTAAGTCGAATAGGTGCAATTTTTGCCGATAAAACACAACTATTTGGGCGGGGGTGACACATCGAATTAGTGTATTCGTTCTTATATAGGTGCAATTCATATAGACAAATAAATAAACATAATTGTCAATATACATTGTCTATTTTTTCTTATCAAAATGTCAAATAATAGCAATGAGAATTTAAGGACCCGTTTGATAACCAATTTACTTTCTGTTTTTAGCTTTTAGTTTTTGGTTTTTTTAAAAATGGGTGTGTTTGGTAACTAATTCATTTTTTAGGAGCTATTTGATAACCATTTTGTTTTTAGTTTTTGGTTTTTAGTTTTCTTTTTTAAAAAAACGGTTATGTTTGGTAACCAATTGAGTTTTTTGTTTTTAAGTTTTTGAAAACGTTTTAGAATTCTTAAGAAGTTTAAAAAAAAAAAAAGTTTTCAAAAACGGGTTTTCGTATTCAAAAATTAAAAAAAAAATGTTGTGTAATCCAACCCTAACCTCACGCCTTGAAGAAATCAGTCTTTTAGGGCCCGTTTGGTAACGTTCTCGTTTCTTGTTTCTGTTTCTTCATTTTTAATAAAGAAAAATAGAATTTCATGACCCTAACACCTATACATTCAATAAAAAGAAACAATAACAAAAAATGAGAAACTAGTTTTAGTTGTTCCCAAAAGTTCTATACAAATTTTGGGAGTGTTTCTAAAAAATAAGAAACAAGAAATATACATAGTTATTAAATGCTTAGATTTCTTAATAAAATTGGAAACAAGAAACAAGAAACGAGAACGTTACCAAACGGGTCCTTAGATGCCCTAGCCTCACGTCTTGAAGAAATCAGTCCCCCCAAAAGTCTCTAAGACTACGAAGCTTCTCTAGGGAGCACGAAGAACAAAAGCAGACTCACTCGATGGGTTGCTGTTTCTTTTCTATTTCTTTCTCTTTTTTTTTTGGTTCTCCATTCAATTGCGATTTTGATTTTTGCTTTTTGACTGGAATTTGTTCTACTTTTGGCATTTTCTTTTCTACTGTTTCGTTGTCGATAAACTTTGGAATTTGTTCTACTTTTTTTTTTGTTGATATACTCTCATTTTGTTTCCAAATTTATTATGGAATTTGCAAGGCAATGATATGGAATAATATTGTGTTGATGAGATGGACAACAATTCTTTTGTGAGGTTTGGGTCAAGTTACACTTTGGTCCATGAGTTTTAAAACTCAACAAAATTACTCTTGGATTTCGTTACACATTTGGTCCCTCCGTCCAATTTTCTGTTAAATCCTAACAGTTTGCTGATGTGGCACTATTATTTTAATAAAAAAAAAATTAAATAAAATATATTAAAATAATAAAAAAAGTTATTATTATTATTTTTTTAATTCTTTCTCTCTCCCTTTCTTTTCCTCTTCTTTTCCTTCTACTTCTCCTTCTTCTCGGAAAATTTCAATTAACTCCCCCAACAACAAAATTTGATTATAGGTTAATCTCCATGATTAACCAAGTTAAACTAATGACATGACACATCAGATTACACAAACACATGTTAATTTATGATGTCGAATCTAAGCCTAGTTCAATTTGTTACAATTTGATGACCTTAACTAGAAGGTCAAATGTTTGAATTTCCACTCCTGGCCCACATATTGTCGAACGATATATATATATATATCAACATTCAAAGTTCATAGACAACATAATTAAACTTTTTAGAGTCCCATAAAAAGTTAGATTCAATGAAAACAGAGTAGATTCAGAAATTGGATCTAAATTTAAATAATGGTTCAAAATGTGTTTGATAATATATTTATAAATGATAAATTATTTGTAGTTATCAACTAAATATTAAGTTGAATATAAAATATTATTAATTAATTTATAAACATGCTATGTGTTATAATTTTTTTTTATTATTATTTTACAATATCATATAATTTATAACACATTATATTATACAAATTTTAATTTCGCAAAAATAAAATTTATTAACCTAGCATATTTTTCTCTCTTTCGCTGACCTCCTTCTTCTTGTTCTTGTTCTTCTTTTATATATATATATATATATATATATATTCAATATTTATTAAAATATATTTTTATATTATTTAATTAAAATTATATTTATAATCAACAAATTATAATTGATTAAAGTTAATTATACTAATAAATAAATAATGTTGCGTATTTCTTTTAAAAAAATTAGTGGATACATATATATTAAATCAATGTAATTAAAAATATTTATTAAAAATATTAAAAAAATAATATTAATTAGTTAAATCAACATGATTTATTCAATTAGATTTCAATGAAAAAAAAATACTGAGAAAATCTAATAAAAGGTGAAAGACTATTTAAAGTTGAGGGGTTATATCAAAATTGAAAAAAAAAATATTTATAAGTTTAGTCCATAAATTTTCAAGGTTTGTAACAATTAGAAACCTGAACTTTAAAAAATGTCTAATAATTCCCTGAACTTTTAATTTTTTTTCTAATGGGTCCCTGTACTTTAAAAATGTCTAATAGGTCCATAAACTTTTAATTTTGTGTCTAATAGGTCATTGGCATTTTCAAGATTTTAAAATATGAACCAATCTACTATTTATAAAATTGATATGCCTATTAAAACTCTAAACTTCCAATCATGAATCTAGTAAGCTTGTGAATTTTAAAAAATGTCGAATAGGTCAAAGACTTATTAGATACAAAATTAAAAGTTTTTTTTTTTTTTTTTTTTACAATAGATACAAAATTAAAAGTTGAGGAACCCATTGGACACAAAAGTGAAAGTTTAAGGACCTATAGACTACTTTTTAAAGTTTGGGGACTTATTGAAAACAAAATTGAAAATTCGAGGATCTATTTGAAACTTTTTAAAGTTCAGACACTAAATTGACACAACTCTTCAAGTTCAGGACTAAACATGTATTTTTTTTTTTTTTTTGAAAAAAAAACTAAGCATGTAATTTAACCTTCTAAAAAAATGGATTCAAAATAAAAAGCACCAAAACTATACCTAAAACTATATCCATTTTAGGACTAAGGCTTAGTTTGTGGTTGCTGTAACTTCTAAAATAATTTGCTTTTAAGAAAATCAGCTGTATTACAAAGTAAATTAGTGTTCGGTAAATTTTAGCTTTATAGACGAAAAAAACAAGTTGAGGTGTTTGGTAAATTAATATTCTAAATTATTGCAGCTTAACTATATTTTTTCAATAAATAAATTTAATTTCGATATTTAATTTCAAAATTTTAAAATAAAATTTCAAAATTATTTTAAGATAATTATTTTTTTGAAACATATAAGATAATTGTTTTAAATTTGATATGATTTAAAATATAATCTTATGTTTGTTTTTATATTTTGCTAGCTACCTGTATTGGAAAAAATATTATTTTCCAATTTAAATAAAAATAAAAACAAATAATTTCAAATGAGTATAAAATAATAAAATAAAAATATGTTAAATTAATAAAATGATTCACATGAATAAGTCTAAACAAATAAATAGTTAGTTACCGATTATATTTTTAGGAAAGCTAAACGGAAAAGCTACCATTATTGAATTTTTTCAAATGAACTTGATTGAAAGAGTACTTTTATAAAAATTAATTTATAATATGTTTTACCACAAAAAACGGTTAAGATTATTTTTTAATCACTTCAATGATTCCTTCTAAAAAAAAGTGAGGGTAAATGGATTGGGATATGATTCGTATTTCAAATTTCAAAAGAAAAAAAAAAAAAAAAAGTTAAGGATCAGATTCAGAAACATTGCAAGTGGGAATACCAAATGGAATTTCTACACTTCATTGAAAAATATATATATAACCAACAGAGAAACTTGGTTCGCAAGTTCTGAGAAGAAAAGCATTGAAAGAGCTCTTCAAGAACAAGACTAGAACAGGTCGTTTCTTTCTGGGTTTATCTTCCACGCATGGCGATGCTCCTCGATCCACACTCACCGTTCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATTACGCCAAGTGAGTAACAAGCCTTCGATCACTATCTCTTCTTTCGGATTCTCCTTGATTTCCCCAATTACCACATAGATCTTTGAATTAGACCCCTCTTTTCCTGCAATCGATTACTCCTCATCGCGTCAGCGTATTCAACTTGTAAGTATTTTAAAAGGTTGGTTCCCATGAAGGACTCCAGTCATCCTTTCTTTCTGCGTTTTTATTGGGGTTTTGACACAATCTTTTCTGGTAGGTCAAACTTTTGAATGGAAACAAATAATCGGAGACCTGACCAAGGCAAAGAACCTTTCAGCGCTGCCGGAGGTCCCCGATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGACAACGAATTGTTAAGAAGATGTATGATTTCTTACTTTTTTTTTTTTTTTCTTGCTTTTCGATCTACCATTATATATTATTTGAGAAATGTGTTTGAGCTCTTATAACTTTTTGTTTCATAGTTTATTGCTTAGGTATAGTTACTCTGGGATGGTTTTGTCAAGTAAACTATGAACAGAAAAACTTTGGAAATGTAGAACTATCTTCGACCTTTTTCTTAGATTTTGGGTATAACTGATAGATGCGAAAACAGTTCGTTAAAGATAAGAAGCATAAGTTATTTGTCGCAGTATGGATCTTGTTGAATTTTTCTTGACCGTTCTGAAGTACATTCCTTCAGACTATCTAATATTTTGAATCGTGGACATGGATTACTCTGTGGTTTTCCTTTCGCGAACAGCTTCTCATGCTTTTTTGGTTTAATAAACTAGTTAGTCATTTTGTTTTCCATTTTTATGTTAGAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGGATTGAGTGAGCTGAGGAAGATTGTTGAAAGGTTTGAGGAAGAGGTTTATACTGGCGCCAACAGTCAGGTATTTCCTTTTCACTTTGTTATATTTTAAATCAAGGAATGTAAGAATAAACGTATTCTCATTTATGTTTATCCCATTTGCTGATAACAACAAGCTTCCAATTTGATTTGGTGCCTGAGATTTAGTTGTGTACTGAAGCATACTTCTCTATAACGACTTGTACATGTGGACTTTTAATAAATCCTGTTTTAGTATGTTATGTATTCTTGCACTAAATACAACATTGTTTTAGCGATCTCTTGAGTACTCCCACCAATTCTTCTATTATCTTCTGATTTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGAGTATGGAAACCACCTAGGCACCTATGGTGCCTGTCAATGAGCCTCTGGATTCTGGTAATGTATCAACAGACAATCTGCGACTATGTTGTACATGATGAAAATTTCACCACCATTTTTTAAGCCAATTTGTGAATGAATTTCTTGTTATAGAGTTTCTGGTTTCTCCGTTCCCTTCTTAAATATACAAGTAGGAGTTAGTAAGTCTGCCGGACCACAATAAAGTCTTATAATAAGAGTTAATAAGTTTGTGGGACCCACAGTAATTGGTTAATAAATTTGTGGGTTGTGTGTTGCTCAATTCCTGACAACGAATTTCTTGTGTGTTGCATGATACATAATTCATATGTTTGGTGTGTTGCATGATGCGGAATTCATGTGTTAAGAGTGCATTGTTGTATGACGCATAATTCATGTGTTAAGAGTGCATTGTATGACACATAATTCATGTGTTAAGAGTGCGTTACATGACGTGAAAATCATGTGTTAGGTGCGTTACATGATGTGAAAATCATCTATTAGGTGCGTGTGAAAATCATGTTTCGGGTAGAGGTGCGTTGCATGATGCGGGGTGA

mRNA sequence

ATGGGACAGGGTTTGTCTTTCACGCATGGCGATGCTCCTCGATCCACACTCACCGTTCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATTACGCCAAGTCAAATTTTTTAATGGAACCAAATAATCGGAGACCTGCCCAAGGCAGAGAACCTTTCAGCGCTGCCGGAGGTCCCCAATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGGATTGAGTGAGCTGAGGAAGATTGCTGAAAGGTTTGAGGAAAAGGTTTATACTGGCGCCACCAGTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGACTATGGTGCCTGTCAATGAGCCTCTGGATTCTGATGAAGAGGATCATTATGAGCCCAATGATGCTAAGGTATGTTGTCGAAATTTTCGAAGCATTCGGTTAGAATTGCGTTGGTGGCTTAGTAATGTCTTTTATGTAGTAAGGTCGTTTCTTTCTGGGTTTATCTTCCACGCATGGCGATGCTCCTCGATCCACACTCACCGTTCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATTACGCCAAATCTTTGAATTAGACCCCTCTTTTCCTGCAATCGATTACTCCTCATCGCGTCAGCGTATTCAACTTGTAAGTATTTTAAAAGGTCAAACTTTTGAATGGAAACAAATAATCGGAGACCTGACCAAGGCAAAGAACCTTTCAGCGCTGCCGGAGGTCCCCGATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGACAACGAATTGTTAAGAAGATGTATAGTTACTCTGGGATGA

Coding sequence (CDS)

ATGGGACAGGGTTTGTCTTTCACGCATGGCGATGCTCCTCGATCCACACTCACCGTTCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATTACGCCAAGTCAAATTTTTTAATGGAACCAAATAATCGGAGACCTGCCCAAGGCAGAGAACCTTTCAGCGCTGCCGGAGGTCCCCAATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGGATTGAGTGAGCTGAGGAAGATTGCTGAAAGGTTTGAGGAAAAGGTTTATACTGGCGCCACCAGTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGACTATGGTGCCTGTCAATGAGCCTCTGGATTCTGATGAAGAGGATCATTATGAGCCCAATGATGCTAAGGTATGTTGTCGAAATTTTCGAAGCATTCGGTTAGAATTGCGTTGGTGGCTTAGTAATGTCTTTTATGTAGTAAGGTCGTTTCTTTCTGGGTTTATCTTCCACGCATGGCGATGCTCCTCGATCCACACTCACCGTTCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATTACGCCAAATCTTTGAATTAGACCCCTCTTTTCCTGCAATCGATTACTCCTCATCGCGTCAGCGTATTCAACTTGTAAGTATTTTAAAAGGTCAAACTTTTGAATGGAAACAAATAATCGGAGACCTGACCAAGGCAAAGAACCTTTCAGCGCTGCCGGAGGTCCCCGATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGACAACGAATTGTTAAGAAGATGTATAGTTACTCTGGGATGA

Protein sequence

MGQGLSFTHGDAPRSTLTVLLHGLLNHLRPFCNYAKSNFLMEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWRMETLKRHLPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLTMVPVNEPLDSDEEDHYEPNDAKVCCRNFRSIRLELRWWLSNVFYVVRSFLSGFIFHAWRCSSIHTHRSLAWLAKSSTTLLQLRQIFELDPSFPAIDYSSSRQRIQLVSILKGQTFEWKQIIGDLTKAKNLSALPEVPDQQQVAAQPESRPAIGGLNCSPILDNELLRRCIVTLG
Homology
[Close]
BLAST of Spg008407 vs. NCBI nr
Match: XP_038887807.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 7.2e-20
Identity = 68/130 (52.31%), Postives = 72/130 (55.38%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RP QG EP                GIEA DWR               METLKRH
Sbjct: 1   MDANNWRPTQGAEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 139
           LPV G +GLSELRKIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGQEGLSELRKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQPHMGTSLPSNP 114

[Close]
BLAST of Spg008407 vs. NCBI nr
Match: XP_038887614.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 9.5e-20
Identity = 68/130 (52.31%), Postives = 72/130 (55.38%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RP QG EP                GIEA DWR               METLKRH
Sbjct: 1   MDANNWRPTQGAEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 139
           LPV G +GLSELRKIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGQEGLSELRKIAIRFEEKIYTAATSQSDYLRKISLKMLTMETKSQPHMGTSLPSNP 114

[Close]
BLAST of Spg008407 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-19
Identity = 67/130 (51.54%), Postives = 72/130 (55.38%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RP QG EP                GIEA DWR               METLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 139
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]
BLAST of Spg008407 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-19
Identity = 67/130 (51.54%), Postives = 72/130 (55.38%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RP QG EP                GIEA DWR               METLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 139
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]
BLAST of Spg008407 vs. NCBI nr
Match: XP_023553730.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-19
Identity = 67/130 (51.54%), Postives = 72/130 (55.38%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RP QG EP                GIEA DWR               METLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 139
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]
BLAST of Spg008407 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.5e-15
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR------METLKRHLPVDGPDGL 100
           M+ NN RP+         G P   TG   T +     +      METLK+HLP  GP+G+
Sbjct: 1   MDNNNWRPSLPN------GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGI 60

Query: 101 SELRKIAERFEEKVYTGATSQSDYLRKISLKMLTM 130
           +ELR+IA RFEEK+++GA +Q+DYLRKIS+KMLTM
Sbjct: 61  NELRRIAARFEEKIFSGALNQTDYLRKISMKMLTM 89

[Close]
BLAST of Spg008407 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-19
Identity = 67/130 (51.54%), Postives = 72/130 (55.38%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RP QG EP                GIEA DWR               METLKRH
Sbjct: 1   MDTNNWRPTQGGEP----------------GIEAGDWRSQLQPDSRQRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT----------------- 139
           LPV G +GLSEL+KIA RFEEK+YT ATSQSDYLRKISLKMLT                 
Sbjct: 61  LPVSGHEGLSELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNP 114

[Close]
BLAST of Spg008407 vs. ExPASy TrEMBL
Match: A0A6J1JMY4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-19
Identity = 65/130 (50.00%), Postives = 73/130 (56.15%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RPAQG E                +G++A DWR               METLKRH
Sbjct: 1   MDSNNWRPAQGGE----------------SGVDAGDWRSQLQPDSRHRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT--------------MVP 142
           LPV G +GLSELRKIA RFEEK+Y  ATSQSDYLRKISLKMLT              MVP
Sbjct: 61  LPVSGHEGLSELRKIAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVP 114

[Close]
BLAST of Spg008407 vs. ExPASy TrEMBL
Match: A0A6J1JM75 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-19
Identity = 65/130 (50.00%), Postives = 73/130 (56.15%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RPAQG E                +G++A DWR               METLKRH
Sbjct: 1   MDSNNWRPAQGGE----------------SGVDAGDWRSQLQPDSRHRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT--------------MVP 142
           LPV G +GLSELRKIA RFEEK+Y  ATSQSDYLRKISLKMLT              MVP
Sbjct: 61  LPVSGHEGLSELRKIAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVP 114

[Close]
BLAST of Spg008407 vs. ExPASy TrEMBL
Match: A0A6J1JK72 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-19
Identity = 65/130 (50.00%), Postives = 73/130 (56.15%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RPAQG E                +G++A DWR               METLKRH
Sbjct: 1   MDSNNWRPAQGGE----------------SGVDAGDWRSQLQPDSRHRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT--------------MVP 142
           LPV G +GLSELRKIA RFEEK+Y  ATSQSDYLRKISLKMLT              MVP
Sbjct: 61  LPVSGHEGLSELRKIAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVP 114

[Close]
BLAST of Spg008407 vs. ExPASy TrEMBL
Match: A0A6J1JHV7 (mediator of RNA polymerase II transcription subunit 15a-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-19
Identity = 65/130 (50.00%), Postives = 73/130 (56.15%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR---------------METLKRH 100
           M+ NN RPAQG E                +G++A DWR               METLKRH
Sbjct: 1   MDSNNWRPAQGGE----------------SGVDAGDWRSQLQPDSRHRIVNKIMETLKRH 60

Query: 101 LPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLT--------------MVP 142
           LPV G +GLSELRKIA RFEEK+Y  ATSQSDYLRKISLKMLT              MVP
Sbjct: 61  LPVSGHEGLSELRKIAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVP 114

[Close]
BLAST of Spg008407 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 6.8e-16
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 41  MEPNNRRPAQGREPFSAAGGPQSTTGGSSTGIEASDWR------METLKRHLPVDGPDGL 100
           M+ NN RP+         G P   TG   T +     +      METLK+HLP  GP+G+
Sbjct: 1   MDNNNWRPSLPN------GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGI 60

Query: 101 SELRKIAERFEEKVYTGATSQSDYLRKISLKMLTM 130
           +ELR+IA RFEEK+++GA +Q+DYLRKIS+KMLTM
Sbjct: 61  NELRRIAARFEEKIFSGALNQTDYLRKISMKMLTM 89

[Close]
BLAST of Spg008407 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-09
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 79  METLKRHLPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLTM 130
           MET  + LP   P+G +ELRKIA RFEEK++  A++Q++YLR+I +KML M
Sbjct: 24  METQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQICMKMLNM 74

[Close]
BLAST of Spg008407 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-09
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 79  METLKRHLPVDGPDGLSELRKIAERFEEKVYTGATSQSDYLRKISLKMLTM 130
           MET  + LP   P+G +ELRKIA RFEEK++  A++Q++YLR+I +KML M
Sbjct: 24  METQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQICMKMLNM 74

The following BLAST results are available for this feature:
BLAST of Spg008407 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887807.17.2e-2052.31mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida][more]
XP_038887614.19.5e-2052.31mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida][more]
KAG6571702.12.8e-1951.54Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy... [more]
XP_022963528.12.8e-1951.54mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
XP_023553730.12.8e-1951.54mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub... [more]
BLAST of Spg008407 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I1719.5e-1548.42Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
BLAST of Spg008407 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HI151.3e-1951.54mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1JMY42.3e-1950.00mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1JM752.3e-1950.00mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur... [more]
A0A6J1JK722.3e-1950.00mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucur... [more]
A0A6J1JHV72.3e-1950.00mediator of RNA polymerase II transcription subunit 15a-like isoform X4 OS=Cucur... [more]
BLAST of Spg008407 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15780.16.8e-1648.42unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.11.6e-0954.90unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.21.6e-0954.90unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036529Coactivator CBP, KIX domain superfamilyGENE3D1.10.246.20Coactivator CBP, KIX domaincoord: 77..134
e-value: 2.9E-14
score: 54.9
IPR036546Mediator complex subunit 15, KIX domainPFAMPF16987KIX_2coord: 78..129
e-value: 7.5E-23
score: 80.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..72
NoneNo IPR availablePANTHERPTHR33137:SF27OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATEDcoord: 41..129
IPR044661Mediator of RNA polymerase II transcription subunit 15a/b/c-likePANTHERPTHR33137MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATEDcoord: 41..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008407.1Spg008407.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0003712 transcription coregulator activity