Spg008371 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008371
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cold shock protein 2-like
Location	scaffold10: 34633450 .. 34639039 (-)
RNA-Seq Expression	Spg008371
Synteny	Spg008371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATTTTGACCGCCATTACAAGATTGAGATTAATGCTCGACTGAAAGTAAAACTGAAACTGAAAGAGAACGAACCTGGGGCTACGGCGGAGTCGCCGACGGCGATTTGGGAATCGAGAGTGGTGGGGGTCGAAATTAGTCTTGGTTCTGGTAAATCGCAGTGGAGGAAGCTGGATTTTGTGAGTTGAATCGAAGAGGCGTAGGGTTTGAAGGCGCGAAAAGGGGGGAAATGGGATTTGGGAAAGAGGTGGAGGCGGAAGTGAAGGCTACGGCGGTTGGGAGGTGGCCGCAGGGAGAGGGGCGGTTGCGCGCTTCTTTACAATGTTAACTGTGTGCGAGAGAGATGGAACGTTCAGCGCATGCGGCAGCGGCTTGGTTTGTCTCAATACTTTGACTTTCTTTCTCCCTTTCTATTCCAACTTCTTACACTTAGTTGAGAAATTATTGGAGGAGATCGTCATAATTGGACTAATAGTTTTACACACCTAGATCTTTGAGGAGAATTTGTCAAACTTATATCGGAATTGTATTATTTTTTATTTTTTTAACAATATATGGGATGGAGGGATTTGAACCACAACTTTGTGCAAGTTGAGTTGTGCTCTTGTTGGCTATCGGATTTATATTTAATAGTTATTATTAGAAACATATAGATTTTGAATATGTATCTAATATGGTTGTTAGAGAGTAGTCGTACAGTCTCATTTAATAATTACACTTATCTATTAGATGTAATATAAATAGACAAATAAAAATAGGTTGAATTATTAAAAGTACCCTGAACTTTGGGGTTGGTTTTAATTTTACTCTTAAACTTTAAAAAGTTTTACTTTAACTTTGAAGTTTGAATTGTCTTTCAAAATGACGCTTGACGGTCTTTTTCATTAAATTCATGAACGGAAAATGATGTGTTTGCAATGTATTGCTGCTTTTGTAAACAAATATAAACAGTTCTGTTAAAAAAATTTAAAAAAATAAAAACATATGTAAACGTGTTATTTTCCATCTATGAATTGGAGAGAAAAAAACTTCGAGGGTTGTTTGTTTTGAAACAAACTTCAAACCTTAGGGATTAAAATGAAAATTTTCAAAGTTTGGAGGTATAATTGAAATCACCCTCAAAGTATAGTTGTGTTTTTAATAATTTAACCAATATCACATTGGAATGTGAGTAGAAACTCTTACCTGGTGTGTAGGTAAGTTTTGCTAATTGTTAGTTGGTTCTAGCTTAATTATAAGTTTGGTCTTGAATTTTTAAAAATGTGTGTTAATATATATTTGAACTTTAAAATGTGTCTCACATAAGTTTTCAAATTGTCAATACGATAAGACTTTGAAATTTTAAAAATATTTAATGGATCATAAACTTCCGATTATATATTTAGTAAGTCGCTTAAATGGCAAGGGAGCATGAGGATGAGGATGAGGGCTTTCGAGGAAAGAAAAAAAAAAAGAGAGAGAGAAGAATTGAGTAGAAAGAAATAGAAAGAGATAATATAATTTGCCAAGTTAGAAAACTCAATCCACAAGTAACTATCACATCATTTTTCTATTAGTTAATTAACTATCAAACAAGCTCACGAACCATTTATAACCAATTTTCAAATCTTGCCGACCAAATGACGCAAATTCAAGTTCAAGGACCAAAAGTATATTTTATATTAGGTTGAATCTTCCCTTATAAGACTCTTAAAAGAAAAAGGTTAAAGTGACTTAGAGAATGTACTACAATGGATAAACAAGAATAATATCAATATAAGTACACATATCTTATTCTTAAGTAACAAGTTAAAGTAAATTCTTAGTCCAAACAAATCATATTAGATAGGATGAAATTGTCAATTCAAACATAACTAAATAGATGAGACACATGTTGATGGCAAAATCTGGACAGGAGGAACTCACCTGACCTTCACGTGCCACCAACGGTAAATTTGTATGAGAGGGGGGAAGACGTGGTATGCAAAACAGTGAACCTGCACACTGGTGTGGTGCTTGTCACACCGCCTCCGATGCTTAAGTCAGAAAGTTGAAGGAGGAGGGCAAAAGAGCAAAGTAAGAGGAAAGAGTTCAGGGAATGAGTCTCGGGATCCCCATCTTCAGTGACGGAGAAGGGTTTAAATATATGTTCCTCCTTTAGGGTTTTTAGGCGTTCGAAGGCGATTCGGGTTGAACCAGGTGGAACCGGGACAACCAGAGGCACTAGGGATCGAACGGAGGGGAGGGAACTCGGCCCACACGAGTGAGTCGAGAATGGGATTGGGCCGAGAGGGCCCAATTCCTTCGGCTCGCTCTCCTCTGGGGTCCGCTTCCTGGTCAAGCTTTCGTGTTAGTGCTGCGTTATCTTGCTTAGTCCTTGGATTATGGAGTGGTCCTTGGATTATCATTTTAAAAGCGGATAGTTTAAATGACTAAAAGAAAAGAAATAATATATAAAATTGGATTAAAAATGGATAATTGATTTATTTTGGTTGGTTGAAGTTGATTTAAAATGGATGGTTGAGGTTGAAAATGCCAAAGGTTGCATAAGGGTAGAACAATGAGAAGCATGAAAAAGCACATCAACATGAGCGGTCCGAATCCATACTTTATTATTATTTATATTATTTATTATTTTTTTATTTTTTGAAAACAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTGGGAGGATTCAAACCCTAATTTAAGACTATCACATTTTGTAACCAAAAATTCTTAGTATTAAAACAAATTTCAAATTAAACAAATTGCACATTAAGATTTTATTCCAAGAAATGAAAGTCTATAGAGTTTAAATTGATAAATTGAGTCTGCTACGATGATTAAAAAAATAAAAAATTTCTCAATTTAAAAAAAAAAAAAAAGAAAGAAAATCATACGTTAAAATAGTGTACCATGATTTATTTACATATATATATTTTTTAAATTGGGTTTGACAAGAATATAGCTGTCCAGTAGATTTCTTTGCCATACATTCCAACATTTTTCCTCCACTAAAACAGCTGAGGTGAAGATAGCTCTGATTTTTTATACACATATCATTTTTTAAACAACCATTATAAAATTAAGAAAGTATCACCCATTTTTTATTTTATCAACTATCAAGTAATAATGCTGTCAAAGAAAAAAAAAAGTAATAATAAGTCAACATTTTGCGCCAATCACTTCTCAATTCTTTATTGATTGGGCATTATAGTAATCAATATATCATCATAATTATATTTAACCATTTTCATTGTTAAAATTAGTTTAATGCACTTCTCAAAAAAAAAAAAAAAAAATAGTTTGATGCTACAATAGTAGGCATTTATTTATGATGACGACTAGACTAATCCACAATTACTAATGTCAACGTTTATTTTAAAAAAATACAAACGTCAACATTTTCACACGTGGACTAAATTCATCCAATCAGCAATCCAGCCAAGCCAAGCCCTGCCCAGTTCCTGCTTAATGGTCTTAGCCATCTGATACATGGTTTAAATGGGCCTCGGCCATCTTCCCAAGCCCACTTTCTTTCCAAATTTGATTGTATTATCACTTTTGAGCTTACTGCAGGTTTGAGAGTGATTTCGAAATGACTAAAACCACTTTATCATTACTTCTGACTTCTTGGTTGAGAGTATATGTCAATTACCGCTAAACTACGCTCGCTTTGACATCATTTTTTCATGTTCGAAATCATCATGAAACATATTTTTAATTATTCAAAATCAATTTTATGTTTAATTTGATATTTTTAAACGTGAATTTCATATCATCGAAACTGATTCTGAATTATTAAAAACACTTTTAGAAATGATTTTGAATATAAGAAAAGTGATTTTAAATATATTAAAATCAATCACAAGCATGCACTGATTTTTTTTTTTTATTTTCCAATTTTCGTTTTTAGTGGCACAGTAAGCTGCGTATACTGTATACGATCTAAATATATACGACTCATTTTGGCGCCATAATAATAATAATATTATTATTTTTTAATATTTCTTTTGGATTACGTGTTCTTTTGCGGTTAACTTGGTTATCTAAGCGGATGACGTGGCAGTAGCCCAATGGATAAGAGCGAAGAGAGCCGAACCTATCTGGAGCTGATAAAAGCAGCTCATAACCGTCCGATGGTTGGGTCCCACGTCACCCCGAATCCTGCTTTTTCCCTCGAATCTCTCTTTCAGAGAGATATCCACTTTCGAAAACTGAATCAATGCTCAGAAGAAACTCAACTGTCCGCCATTGATTCCTTCTGTGAATGACAGCAGCTTAATCAACTAAATATACATTGTTCGAAGCTTTTCGATTGTTCTTTCTCTTCCCTTTTTTCTTTTTCCTTCTTGTAGATTTTTTTTTTTTTTTTTTCCATGGCTGAGGTGAAGAGATCGAGCGGCACTGTGAGGTGGTTTAGTGCGCAGAAGGGGTTTGGCTTCATAGCTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACTTCGATTCGCTCCGACGGGTTTCGGACTCTTTTCGATGGTCAGGCTGTCGAGTTTGCCATCGATTACGACGAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGGGTTTGGAGGTGGCCGTGGGGGTGGCAGAGGTAGAGGCGGTGGTTATGGAAGGTTCGGCGGAGGAGGAGGCGGTGGTCGTGGTTTTGGCAGAGGAGGCCGGTACGACGGCCCAAGCAGCGGTGGTGGTCGTGGCGGTGGCGGTGGCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGACTGTTATCGGGGAAACGGCGGTGCGCCTCCCGGCCGTGGAGGGGGTCGTGGATACGGCGGTGGTCGGGGTTATGGCGGCGGCGGTGGCGGCGGTGGCGGTGGTTGTTACAATTGTGGAGATACAGGACATTTTGCCAGGGATTGTCCAAACGAAAGCAAATGAAGAATGCGGGTCTTCCTTTAAGCGGTATTTATACTTTTTTTTTTTTTCTGAAGATTAATTTGGTTGGGCTGTTAATTTTTTTGGTGCGAATTCTGGGATTTTTAAGTGTGTCGGCGACTGCAAGTCTGCAATTGAGAGCACGAGGATCCGAGACAATAAACCATTGTTTCTCCTTTTGGGTGTTCGATAATTTGTTGATGATGGAACTGGAAGCAATTGTTTGTATATGCTATACCTTACTGGGCATTTCTAATTCATTCTTCTTTTGATTGTTGTGATAATCTTAACATGTTATGTAATATGATATATGTAATCCCGTCAAGAGTATATGTTCATACCATTTTGTATTTCTTATGTTTCATCTCTGTCAATTTCTGTATTACTTTTCTCTTTTGCTCCATTGTTGATTTTCTGGGATTCTTTGCCCATAAACTTTTATTATTGGTGTTGGCCTGTTGGATTGCCAATAATTGTCCTGCACCGTCTACTCTATTATTGCCTGTGTTTTCTCCAGAAACTGAATGATATTGGCTCTTATTAGGTATTCTAAGAGTATTTTTGATATCTTTTAAGTCTTTCGTAGAAGAAGCTAAAGCCATTTCGGGTTTCATGAATATATGA

mRNA sequence

ATGATGAATTTTGACCGCCATTACAAGATTGAGATTAATGCTCGACTGAAAGTAAAACTGAAACTGAAAGAGAACGAACCTGGGGCTACGGCGGAGTCGCCGACGGCGATTTGGGAATCGAGAGTGGTGGGGGTCGAAATTAGTCTTGGTTCTGGTAAATCGCAGTGGAGGAAGCTGGATTTTGTGAGCGTTCGAAGGCGATTCGGGTTGAACCAGGTGGAACCGGGACAACCAGAGGCACTAGGGATCGAACGGAGGGGAGGGAACTCGGCCCACACGAGTGAGTCGAGAATGGGATTGGGCCGAGAGGGCCCAATTCCTTCGGCTCGCTCTCCTCTGGGGTCCGCTTCCTGGTCAAGCTTTCGTGTTAGTGCTGCGTTATCTTGCTTAGTCCTTGGATTATGGACTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACTTCGATTCGCTCCGACGGGTTTCGGACTCTTTTCGATGGTCAGGCTGTCGAGTTTGCCATCGATTACGACGAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGGGTTTGGAGGTGGCCGTGGGGGTGGCAGAGGTAGAGGCGGTGGTTATGGAAGGTTCGGCGGAGGAGGAGGCGGTGGTCGTGGTTTTGGCAGAGGAGGCCGGTACGACGGCCCAAGCAGCGGTGGTGGTCGTGGCGGTGGCGGTGGCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGACTGTTATCGGGGAAACGGCGGTATTCTAAGAGTATTTTTGATATCTTTTAAGTCTTTCGTAGAAGAAGCTAAAGCCATTTCGGGTTTCATGAATATATGA

Coding sequence (CDS)

ATGATGAATTTTGACCGCCATTACAAGATTGAGATTAATGCTCGACTGAAAGTAAAACTGAAACTGAAAGAGAACGAACCTGGGGCTACGGCGGAGTCGCCGACGGCGATTTGGGAATCGAGAGTGGTGGGGGTCGAAATTAGTCTTGGTTCTGGTAAATCGCAGTGGAGGAAGCTGGATTTTGTGAGCGTTCGAAGGCGATTCGGGTTGAACCAGGTGGAACCGGGACAACCAGAGGCACTAGGGATCGAACGGAGGGGAGGGAACTCGGCCCACACGAGTGAGTCGAGAATGGGATTGGGCCGAGAGGGCCCAATTCCTTCGGCTCGCTCTCCTCTGGGGTCCGCTTCCTGGTCAAGCTTTCGTGTTAGTGCTGCGTTATCTTGCTTAGTCCTTGGATTATGGACTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACTTCGATTCGCTCCGACGGGTTTCGGACTCTTTTCGATGGTCAGGCTGTCGAGTTTGCCATCGATTACGACGAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGGTAGATCTAGCGGGTTTGGAGGTGGCCGTGGGGGTGGCAGAGGTAGAGGCGGTGGTTATGGAAGGTTCGGCGGAGGAGGAGGCGGTGGTCGTGGTTTTGGCAGAGGAGGCCGGTACGACGGCCCAAGCAGCGGTGGTGGTCGTGGCGGTGGCGGTGGCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGACTGTTATCGGGGAAACGGCGGTATTCTAAGAGTATTTTTGATATCTTTTAAGTCTTTCGTAGAAGAAGCTAAAGCCATTTCGGGTTTCATGAATATATGA

Protein sequence

MMNFDRHYKIEINARLKVKLKLKENEPGATAESPTAIWESRVVGVEISLGSGKSQWRKLDFVSVRRRFGLNQVEPGQPEALGIERRGGNSAHTSESRMGLGREGPIPSARSPLGSASWSSFRVSAALSCLVLGLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFGGGRGGGRGRGGGYGRFGGGGGGGRGFGRGGRYDGPSSGGGRGGGGGGGECYNCGRMGHLARDCYRGNGGILRVFLISFKSFVEEAKAISGFMNI

Homology

[Close]

BLAST of Spg008371 vs. NCBI nr
Match: XP_022993723.1 (cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016506.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 7.3e-46
Identity = 116/132 (87.88%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDA+DDLFVHQTSI+S+GFRTLFDGQAVEFAIDYDEDQRAKAVDVTV GRSSG+G
Sbjct: 21  GFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVTGRSSGYG 80

Query: 193 GGRGGGRGRGGGYGRFGGGGG-GGRGFGR-GGRYDGPSSG-GGRGGGGGGGECYNCGRMG 252
           GGRGG RGRGGGYGRFGG GG GGRGFGR GGRYDGPS G GG GGG GGGECYNCGRMG
Sbjct: 81  GGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGGFGGGGGGRGGGECYNCGRMG 140

Query: 253 HLARDCYRGNGG 262
           HLARDCYRGNGG
Sbjct: 141 HLARDCYRGNGG 152

[Close]

BLAST of Spg008371 vs. NCBI nr
Match: XP_022938383.1 (cold shock protein 2-like [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 7.3e-46
Identity = 116/132 (87.88%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDA+DDLFVHQTSI+S+GFRTLFDGQAVEFAIDYDEDQRAKAVDVTV GRSSG+G
Sbjct: 21  GFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVTGRSSGYG 80

Query: 193 GGRGGGRGRGGGYGRFGGGGG-GGRGFGR-GGRYDGPSSG-GGRGGGGGGGECYNCGRMG 252
           GGRGG RGRGGGYGRFGG GG GGRGFGR GGRYDGPS G GG GGG GGGECYNCGRMG
Sbjct: 81  GGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGGFGGGGGGRGGGECYNCGRMG 140

Query: 253 HLARDCYRGNGG 262
           HLARDCYRGNGG
Sbjct: 141 HLARDCYRGNGG 152

[Close]

BLAST of Spg008371 vs. NCBI nr
Match: XP_038906549.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 9.5e-46
Identity = 111/130 (85.38%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDAS+DLFVHQTSIRS+GFRTLFDGQAVEF IDYDEDQR+KAVDVTVIGRS+G+G
Sbjct: 21  GFIAPDDASEDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRSKAVDVTVIGRSTGYG 80

Query: 193 GGRGGGRGRGGGYGRFGGGGGGGRGFGRGGRYDGPSSG-GGRGGGGGGGECYNCGRMGHL 252
           GGRGGGRGRGG YGRF   GGGGRGFGRGGRY+  S G GGRGGG GGGECYNCGRMGHL
Sbjct: 81  GGRGGGRGRGGAYGRF---GGGGRGFGRGGRYEDSSGGFGGRGGGRGGGECYNCGRMGHL 140

Query: 253 ARDCYRGNGG 262
           ARDCYRGNGG
Sbjct: 141 ARDCYRGNGG 147

[Close]

BLAST of Spg008371 vs. NCBI nr
Match: XP_023549669.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 2.8e-45
Identity = 115/134 (85.82%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDA+DDLFVHQTSI+S+GFRTLFDGQAVEF+IDYDEDQRAKAVDVTV GRSSG+G
Sbjct: 21  GFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFSIDYDEDQRAKAVDVTVTGRSSGYG 80

Query: 193 GGRGGGRGRGGGYGRFGGG---GGGGRGFGR-GGRYDGPSSG-GGRGGGGGGGECYNCGR 252
           GGRGG RGRGGGYGRFGG    GGGGRGFGR GGRYDGPS G GG GGG GGGECYNCGR
Sbjct: 81  GGRGGARGRGGGYGRFGGEGGYGGGGRGFGRGGGRYDGPSGGFGGGGGGRGGGECYNCGR 140

Query: 253 MGHLARDCYRGNGG 262
           MGHLARDCYRGNGG
Sbjct: 141 MGHLARDCYRGNGG 154

[Close]

BLAST of Spg008371 vs. NCBI nr
Match: XP_022141389.1 (glycine-rich protein 2-like [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 3.6e-45
Identity = 115/135 (85.19%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDA+DDLFVHQTSIRS+GFRTLFDGQAVE++IDYDEDQRAKAVDVTVIGRSS +G
Sbjct: 21  GFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRAKAVDVTVIGRSSEYG 80

Query: 193 GGRGG--GRGRGGGYGRFG----GGGGGGRGFGRGGRYDGPSSGGGRGGGGGGGECYNCG 252
           GGRGG  GRGRGGGYGRFG    GGGGGGRGFGRGGRYDGPS G G GGG GGGECYNCG
Sbjct: 81  GGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSGGFG-GGGRGGGECYNCG 140

Query: 253 RMGHLARDCYRGNGG 262
           R+GHLARDCYRGNGG
Sbjct: 141 RVGHLARDCYRGNGG 154

[Close]

BLAST of Spg008371 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-21
Identity = 84/177 (47.46%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVT------VIG 192
           G  TPDD  DDLFVHQ+SIRS+GFR+L   +AVEF ++ D + R KA+DV+      V G
Sbjct: 25  GFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRPKAIDVSGPDGAPVQG 84

Query: 193 RS--------SGFGGGRGGGRGRGGGYGRFGGG--------------------------- 252
            S         GFGGGRGGGRG GGGYG  GGG                           
Sbjct: 85  NSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSDCYKCGEPGHMARDC 144

Query: 253 -------GGGGRGFGRGGRYDGPS---SGGGRGGGGGGGECYNCGRMGHLARDCYRG 259
                  GGGG G+G GG Y G      GGGRGGGGGGG CY+CG  GH ARDC  G
Sbjct: 145 SEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDCTSG 201

[Close]

BLAST of Spg008371 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-18
Identity = 75/156 (48.08%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVT-------VI 192
           G  TPDD  +DLFVHQ+ IRS+GFR+L +G+ VEF ++   D R KAVDVT         
Sbjct: 23  GFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGRTKAVDVTGPDGAAVQG 82

Query: 193 GRSSGFGGGRGGGRGRGGGYGRFGGGG--------------GGGRGFGRGGRYDGPSSGG 252
           GR  G GGG  GG G GGG G +GGGG              GGG G+G G RY G   G 
Sbjct: 83  GRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGGGGYGGGSRYGGGGGGY 142

Query: 253 GRGGG------GGGGECYNCGRMGHLARDCYRGNGG 262
           G GGG      GGG  C+ CG  GH ARDC +  GG
Sbjct: 143 GGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGG 178

[Close]

BLAST of Spg008371 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-17
Identity = 68/134 (50.75%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVT-----VIGR 192
           G  TP D  DDLFVHQ+SIRS+GFR+L   ++VEF ++ D   R KA++V+      +  
Sbjct: 29  GFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQG 88

Query: 193 SSGFGGGRGGGRGRGGGYGRFGGGGGGGRGFGRGGRYDGPSSGGGRGGGGGGGECYNCGR 252
           +SG GG  GG  G GGG GR GG GGG  G G GGR       GGRGGGGG   C+ CG 
Sbjct: 89  NSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGR-----GSGGRGGGGGDNSCFKCGE 148

Query: 253 MGHLARDCYRGNGG 262
            GH+AR+C +G GG
Sbjct: 149 PGHMARECSQGGGG 157

[Close]

BLAST of Spg008371 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.6e-11
Identity = 76/183 (41.53%), Postives = 93/183 (50.82%), Query Frame = 0


Query: 108 SARSPLGSASWSSFRVSAALSCLVLGLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEF 167
           SA   +G  SW S            G  TPDD  ++LFVHQ+SI SDGFR+L  G++VE+
Sbjct: 7   SAARSIGKVSWFSDGKG-------YGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEY 66

Query: 168 AIDYDEDQRAKAVDVTVIG-----------RSSG---FGGGRGGGRGR---GGGYGRFGG 227
            I    D + KA++VT  G           R SG   F  G  G   +   GG  G+  G
Sbjct: 67  EIALGSDGKTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFG 126

Query: 228 GGGGGRGFGRGGRY----------DGPSSGGGRGGGGGGG--ECYNCGRMGHLARDCYRG 262
           GGGG R  G G  Y          D   SGGG  GGGGGG   CY+CG +GHLA+DC  G
Sbjct: 127 GGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGG 182

[Close]

BLAST of Spg008371 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-08
Identity = 69/152 (45.39%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 115 SASWSSFRVSAALSCLVLGLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDED 174
           SA+ S+ +V+   +    G  TPDD S +LFVHQ+SI S+G+R+L  G AVEFAI    D
Sbjct: 7   SAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSD 66

Query: 175 QRAKAVDVTVIGRSSGFGGGRGGGRGRGGGYGRFGGGGGGGRGFGRGGRYDGPSSGGGRG 234
            + KAV+VT    + G G  +     RG G  R GGGG G    G  G        GG G
Sbjct: 67  GKTKAVNVT----APGGGSLKKENNSRGNG-ARRGGGGSGCYNCGELGHISKDCGIGGGG 126

Query: 235 GGG-----GGGECYNCGRMGHLARDC-YRGNG 261
           GGG     GG  CYNCG  GH ARDC   GNG
Sbjct: 127 GGGERRSRGGEGCYNCGDTGHFARDCTSAGNG 153

[Close]

BLAST of Spg008371 vs. ExPASy TrEMBL
Match: A0A6J1K351 (cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-46
Identity = 116/132 (87.88%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDA+DDLFVHQTSI+S+GFRTLFDGQAVEFAIDYDEDQRAKAVDVTV GRSSG+G
Sbjct: 21  GFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVTGRSSGYG 80

Query: 193 GGRGGGRGRGGGYGRFGGGGG-GGRGFGR-GGRYDGPSSG-GGRGGGGGGGECYNCGRMG 252
           GGRGG RGRGGGYGRFGG GG GGRGFGR GGRYDGPS G GG GGG GGGECYNCGRMG
Sbjct: 81  GGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGGFGGGGGGRGGGECYNCGRMG 140

Query: 253 HLARDCYRGNGG 262
           HLARDCYRGNGG
Sbjct: 141 HLARDCYRGNGG 152

[Close]

BLAST of Spg008371 vs. ExPASy TrEMBL
Match: A0A6J1FIQ9 (cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-46
Identity = 116/132 (87.88%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDA+DDLFVHQTSI+S+GFRTLFDGQAVEFAIDYDEDQRAKAVDVTV GRSSG+G
Sbjct: 21  GFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVTGRSSGYG 80

Query: 193 GGRGGGRGRGGGYGRFGGGGG-GGRGFGR-GGRYDGPSSG-GGRGGGGGGGECYNCGRMG 252
           GGRGG RGRGGGYGRFGG GG GGRGFGR GGRYDGPS G GG GGG GGGECYNCGRMG
Sbjct: 81  GGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGGFGGGGGGRGGGECYNCGRMG 140

Query: 253 HLARDCYRGNGG 262
           HLARDCYRGNGG
Sbjct: 141 HLARDCYRGNGG 152

[Close]

BLAST of Spg008371 vs. ExPASy TrEMBL
Match: A0A6J1CIH7 (glycine-rich protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011802 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-45
Identity = 115/135 (85.19%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDA+DDLFVHQTSIRS+GFRTLFDGQAVE++IDYDEDQRAKAVDVTVIGRSS +G
Sbjct: 21  GFIAPDDATDDLFVHQTSIRSEGFRTLFDGQAVEYSIDYDEDQRAKAVDVTVIGRSSEYG 80

Query: 193 GGRGG--GRGRGGGYGRFG----GGGGGGRGFGRGGRYDGPSSGGGRGGGGGGGECYNCG 252
           GGRGG  GRGRGGGYGRFG    GGGGGGRGFGRGGRYDGPS G G GGG GGGECYNCG
Sbjct: 81  GGRGGGRGRGRGGGYGRFGGGGYGGGGGGRGFGRGGRYDGPSGGFG-GGGRGGGECYNCG 140

Query: 253 RMGHLARDCYRGNGG 262
           R+GHLARDCYRGNGG
Sbjct: 141 RVGHLARDCYRGNGG 154

[Close]

BLAST of Spg008371 vs. ExPASy TrEMBL
Match: A0A1S3CPN9 (cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.6e-44
Identity = 107/129 (82.95%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDASDDLFVHQTSIRS+GFRTLFDGQ VEF IDYD+DQRAKAVDVTVI RS+ +G
Sbjct: 21  GFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRAKAVDVTVIDRSTRYG 80

Query: 193 GGRGGGRGRGGGYGRFGGGGGGGRGFGRGGRYDGPSSGGGRGGGGGGGECYNCGRMGHLA 252
           GGRGGGRGRGG YGRF   GGGGRGFGRG  YDGPS GGGR    GGGECYNCGRMGHLA
Sbjct: 81  GGRGGGRGRGGSYGRF---GGGGRGFGRGRWYDGPSGGGGR----GGGECYNCGRMGHLA 140

Query: 253 RDCYRGNGG 262
           RDCYRGNGG
Sbjct: 141 RDCYRGNGG 142

[Close]

BLAST of Spg008371 vs. ExPASy TrEMBL
Match: A0A5A7TX13 (Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00260 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.6e-44
Identity = 107/129 (82.95%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVTVIGRSSGFG 192
           G   PDDASDDLFVHQTSIRS+GFRTLFDGQ VEF IDYD+DQRAKAVDVTVI RS+ +G
Sbjct: 21  GFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRAKAVDVTVIDRSTRYG 80

Query: 193 GGRGGGRGRGGGYGRFGGGGGGGRGFGRGGRYDGPSSGGGRGGGGGGGECYNCGRMGHLA 252
           GGRGGGRGRGG YGRF   GGGGRGFGRG  YDGPS GGGR    GGGECYNCGRMGHLA
Sbjct: 81  GGRGGGRGRGGSYGRF---GGGGRGFGRGRWYDGPSGGGGR----GGGECYNCGRMGHLA 140

Query: 253 RDCYRGNGG 262
           RDCYRGNGG
Sbjct: 141 RDCYRGNGG 142

[Close]

BLAST of Spg008371 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-22
Identity = 84/177 (47.46%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVT------VIG 192
           G  TPDD  DDLFVHQ+SIRS+GFR+L   +AVEF ++ D + R KA+DV+      V G
Sbjct: 25  GFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRPKAIDVSGPDGAPVQG 84

Query: 193 RS--------SGFGGGRGGGRGRGGGYGRFGGG--------------------------- 252
            S         GFGGGRGGGRG GGGYG  GGG                           
Sbjct: 85  NSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSDCYKCGEPGHMARDC 144

Query: 253 -------GGGGRGFGRGGRYDGPS---SGGGRGGGGGGGECYNCGRMGHLARDCYRG 259
                  GGGG G+G GG Y G      GGGRGGGGGGG CY+CG  GH ARDC  G
Sbjct: 145 SEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDCTSG 201

[Close]

BLAST of Spg008371 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-18
Identity = 68/134 (50.75%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 133 GLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDEDQRAKAVDVT-----VIGR 192
           G  TP D  DDLFVHQ+SIRS+GFR+L   ++VEF ++ D   R KA++V+      +  
Sbjct: 29  GFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQG 88

Query: 193 SSGFGGGRGGGRGRGGGYGRFGGGGGGGRGFGRGGRYDGPSSGGGRGGGGGGGECYNCGR 252
           +SG GG  GG  G GGG GR GG GGG  G G GGR       GGRGGGGG   C+ CG 
Sbjct: 89  NSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGR-----GSGGRGGGGGDNSCFKCGE 148

Query: 253 MGHLARDCYRGNGG 262
            GH+AR+C +G GG
Sbjct: 149 PGHMARECSQGGGG 157

[Close]

BLAST of Spg008371 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-12
Identity = 76/183 (41.53%), Postives = 93/183 (50.82%), Query Frame = 0


Query: 108 SARSPLGSASWSSFRVSAALSCLVLGLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEF 167
           SA   +G  SW S            G  TPDD  ++LFVHQ+SI SDGFR+L  G++VE+
Sbjct: 7   SAARSIGKVSWFSDGKG-------YGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEY 66

Query: 168 AIDYDEDQRAKAVDVTVIG-----------RSSG---FGGGRGGGRGR---GGGYGRFGG 227
            I    D + KA++VT  G           R SG   F  G  G   +   GG  G+  G
Sbjct: 67  EIALGSDGKTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFG 126

Query: 228 GGGGGRGFGRGGRY----------DGPSSGGGRGGGGGGG--ECYNCGRMGHLARDCYRG 262
           GGGG R  G G  Y          D   SGGG  GGGGGG   CY+CG +GHLA+DC  G
Sbjct: 127 GGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGG 182

[Close]

BLAST of Spg008371 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-09
Identity = 69/152 (45.39%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 115 SASWSSFRVSAALSCLVLGLWTPDDASDDLFVHQTSIRSDGFRTLFDGQAVEFAIDYDED 174
           SA+ S+ +V+   +    G  TPDD S +LFVHQ+SI S+G+R+L  G AVEFAI    D
Sbjct: 7   SAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSD 66

Query: 175 QRAKAVDVTVIGRSSGFGGGRGGGRGRGGGYGRFGGGGGGGRGFGRGGRYDGPSSGGGRG 234
            + KAV+VT    + G G  +     RG G  R GGGG G    G  G        GG G
Sbjct: 67  GKTKAVNVT----APGGGSLKKENNSRGNG-ARRGGGGSGCYNCGELGHISKDCGIGGGG 126

Query: 235 GGG-----GGGECYNCGRMGHLARDC-YRGNG 261
           GGG     GG  CYNCG  GH ARDC   GNG
Sbjct: 127 GGGERRSRGGEGCYNCGDTGHFARDCTSAGNG 153

The following BLAST results are available for this feature:

BLAST of Spg008371 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993723.1	7.3e-46	87.88	cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1,...	[more]
XP_022938383.1	7.3e-46	87.88	cold shock protein 2-like [Cucurbita moschata]	[more]
XP_038906549.1	9.5e-46	85.38	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_023549669.1	2.8e-45	85.82	glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022141389.1	3.6e-45	85.19	glycine-rich protein 2-like [Momordica charantia]	[more]

BLAST of Spg008371 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41188	2.2e-21	47.46	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
P27484	3.0e-18	48.08	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	4.3e-17	50.75	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q94C69	4.6e-11	41.53	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	4.8e-08	45.39	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of Spg008371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K351	3.5e-46	87.88	cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1	[more]
A0A6J1FIQ9	3.5e-46	87.88	cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=...	[more]
A0A6J1CIH7	1.7e-45	85.19	glycine-rich protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011802 PE=4 ...	[more]
A0A1S3CPN9	9.6e-44	82.95	cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1	[more]
A0A5A7TX13	9.6e-44	82.95	Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Spg008371 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38680.1	1.6e-22	47.46	glycine rich protein 2	[more]
AT2G21060.1	3.1e-18	50.75	glycine-rich protein 2B	[more]
AT2G17870.1	3.3e-12	41.53	cold shock domain protein 3	[more]
AT4G36020.1	3.4e-09	45.39	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 131..185 e-value: 1.8E-4 score: 30.9
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 241..257 e-value: 2.7E-4 score: 30.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 241..255 e-value: 1.1E-6 score: 28.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 242..255 score: 11.070239
None	No IPR available	GENE3D	4.10.60.10		coord: 222..261 e-value: 2.5E-6 score: 29.3
None	No IPR available	GENE3D	2.40.50.140		coord: 132..190 e-value: 2.4E-11 score: 45.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..108
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 133..261
None	No IPR available	PANTHER	PTHR46565:SF6	COLD SHOCK PROTEIN 1	coord: 133..261
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 133..184 e-value: 1.2E-11 score: 44.2
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 122..184 score: 16.327681
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 136..184 e-value: 9.63542E-11 score: 54.507
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 225..256
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 135..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008371.1	Spg008371.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding